Project measure / variable:   Crowley1   vertical_actd60

ID, description, units MPD:39419   vertical_actd60   vertical activity, beam breaks, 60 min test   [n]  on day 60  
haloperidol study
Data set, strains Crowley1   inbred w/CC8   27 strains     sex: m     age: 9-28wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Crowley1 - vertical activity, beam breaks, 60 min test on day 60



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested27 strains
Mean of the strain means233   n
Median of the strain means169   n
SD of the strain means± 232
Coefficient of variation (CV)0.994
Min–max range of strain means4.62   –   1069   n
Mean sample size per strain5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 26 7993731.5389 307451.213 9.382 < 0.0001
Residuals 131 4292916.3345 32770.3537


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 4.62 7.67   8 2.71 1.66 -0.99
A/J m 30.8 9.6   5 4.29 0.312 18.0, 43.0 -0.87
AKR/J m 74.2 40.6   5 18.1 0.547 43.0, 141.0 -0.69
BALB/cByJ m 64.2 50.7   4 25.3 0.789 16.0, 124.0 -0.73
BTBR T+ Itpr3tf/J m 42.2 37.0   8 13.1 0.877 2.0, 101.0 -0.82
C3H/HeJ m 68.6 58.4   5 26.1 0.851 6.0, 140.0 -0.71
C57BL/6J m 223.0 188.0   5 84.3 0.847 76.0, 543.0 -0.04
C57BLKS/J m 90.4 38.9   5 17.4 0.431 47.0, 139.0 -0.62
CAST/EiJ m 496.0 312.0   5 140.0 0.63 252.0, 1023.0 1.13
CBA/J m 184.0 196.0   5 87.5 1.06 53.0, 512.0 -0.21
DBA/2J m 360.0 191.0   9 63.7 0.53 126.0, 693.0 0.55
DDY/JclSidSeyFrkJ m 110.0 63.4   7 24.0 0.579 12.0, 218.0 -0.53
FVB/NJ m 1069.0 448.0   5 200.0 0.419 631.0, 1656.0 3.6
KK/HlJ m 113.0 108.0   7 40.8 0.953 26.0, 303.0 -0.52
MA/MyJ m 355.0 170.0   6 69.4 0.479 131.0, 587.0 0.53
MOLF/EiJ m 170.0 59.1   5 26.4 0.347 102.0, 255.0 -0.27
MRL/MpJ m 247.0 144.0   5 64.3 0.582 154.0, 491.0 0.06
MSM/MsJ m 169.0 240.0   6 97.9 1.42 -0.28
NOD/ShiLtJ m 434.0 204.0   5 91.1 0.469 156.0, 697.0 0.87
NON/ShiLtJ m 572.0 410.0   8 145.0 0.718 129.0, 1225.0 1.46
NZL/LtJ m 94.4 46.3   8 16.4 0.49 6.0, 162.0 -0.6
NZO/HlLtJ m 61.2 25.1   4 12.6 0.41 29.0, 84.0 -0.74
NZW/LacJ m 69.4 43.1   5 19.3 0.621 36.0, 144.0 -0.71
PWK/PhJ m 138.0 37.1   5 16.6 0.269 90.0, 191.0 -0.41
SJL/J m 276.0 268.0   5 120.0 0.971 102.0, 743.0 0.18
SM/J m 526.0 156.0   8 55.2 0.297 359.0, 777.0 1.26
WSB/EiJ m 255.0 57.7   5 25.8 0.226 155.0, 294.0 0.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 4.625 64.0023 131.2368 0.0
A/J m 30.8 80.9572 190.9527 0.0
AKR/J m 74.2 80.9572 234.3527 0.0
BALB/cByJ m 64.25 90.5129 243.3061 0.0
BTBR T+ Itpr3tf/J m 42.25 64.0023 168.8618 0.0
C3H/HeJ m 68.6 80.9572 228.7527 0.0
C57BL/6J m 222.6 80.9572 382.7527 62.4473
C57BLKS/J m 90.4 80.9572 250.5527 0.0
CAST/EiJ m 495.6 80.9572 655.7527 335.4473
CBA/J m 184.4 80.9572 344.5527 24.2473
DBA/2J m 360.3333 60.3419 479.7041 240.9626
DDY/JclSidSeyFrkJ m 109.5714 68.4213 244.9252 0.0
FVB/NJ m 1068.8 80.9572 1228.9527 908.6473
KK/HlJ m 113.2857 68.4213 248.6394 0.0
MA/MyJ m 354.6667 73.9035 500.8654 208.4679
MOLF/EiJ m 170.2 80.9572 330.3527 10.0473
MRL/MpJ m 247.2 80.9572 407.3527 87.0473
MSM/MsJ m 168.6667 73.9035 314.8654 22.4679
NOD/ShiLtJ m 434.0 80.9572 594.1527 273.8473
NON/ShiLtJ m 571.625 64.0023 698.2368 445.0132
NZL/LtJ m 94.375 64.0023 220.9868 0.0
NZO/HlLtJ m 61.25 90.5129 240.3061 0.0
NZW/LacJ m 69.4 80.9572 229.5527 0.0
PWK/PhJ m 138.0 80.9572 298.1527 0.0
SJL/J m 276.4 80.9572 436.5527 116.2473
SM/J m 526.25 64.0023 652.8618 399.6382
WSB/EiJ m 255.0 80.9572 415.1527 94.8473




  GWAS USING LINEAR MIXED MODELS