Project measure / variable:   Gupta1   adj_area_kidneyR

ID, description, units MPD:39113   adj_area_kidneyR   normalized kidney planar surface area   [mm2/g]  right  
Data set, strains Gupta1   inbred   7 strains     sex: both     age: postnatal d1
Procedure organ dimensions
Ontology mappings

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  STRAIN COMPARISON PLOT
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Gupta1 - normalized kidney planar surface area right



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested7 strains7 strains
Mean of the strain means3.48   mm2/g 3.48   mm2/g
Median of the strain means3.35   mm2/g 3.49   mm2/g
SD of the strain means± 0.384 ± 0.404
Coefficient of variation (CV)0.110 0.116
Min–max range of strain means3.09   –   4.24   mm2/g 2.86   –   4.07   mm2/g
Mean sample size per strain7.9   mice 9.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0196 0.0196 0.1909 0.6631
strain 6 7.6835 1.2806 12.458 < 0.0001
sex:strain 6 0.5583 0.0931 0.9053 0.494
Residuals 108 11.1015 0.1028


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.09 0.248   10 0.0785 0.0804 2.7, 3.4 -1.01
129S1/SvImJ m 2.86 0.187   7 0.0708 0.0655 2.67, 3.1 -1.53
AKR/J f 3.35 0.342   4 0.171 0.102 3.07, 3.82 -0.33
AKR/J m 3.57 0.239   15 0.0616 0.0669 3.05, 3.92 0.23
CBA/J f 3.36 0.554   4 0.277 0.165 2.64, 3.99 -0.31
CBA/J m 3.49 0.111   9 0.0371 0.0319 3.33, 3.66 0.03
DBA/2J f 3.71 0.126   5 0.0564 0.034 3.59, 3.91 0.61
DBA/2J m 3.84 0.0635   2   0.0449 0.0165 3.79, 3.88 0.89
FVB/NJ f 3.28 0.29   18 0.0684 0.0885 2.77, 3.82 -0.51
FVB/NJ m 3.18 0.284   20 0.0635 0.0894 2.77, 3.81 -0.74
SJL/J f 4.24 0.0547   2   0.0387 0.0129 4.2, 4.28 1.99
SJL/J m 4.07 0.49   3 0.283 0.12 3.51, 4.41 1.46
SM/J f 3.31 0.403   12 0.116 0.122 2.77, 4.2 -0.44
SM/J m 3.34 0.536   11 0.162 0.16 2.74, 4.43 -0.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.0874 0.1014 3.2884 2.8864
129S1/SvImJ m 2.8612 0.1212 3.1014 2.621
AKR/J f 3.3507 0.1603 3.6685 3.033
AKR/J m 3.5705 0.0828 3.7346 3.4064
CBA/J f 3.3593 0.1603 3.677 3.0415
CBA/J m 3.4878 0.1069 3.6996 3.2759
DBA/2J f 3.7129 0.1434 3.9971 3.4287
DBA/2J m 3.8376 0.2267 4.287 3.3882
FVB/NJ f 3.2799 0.0756 3.4297 3.1301
FVB/NJ m 3.1769 0.0717 3.319 3.0348
SJL/J f 4.24 0.2267 4.6894 3.7906
SJL/J m 4.0732 0.1851 4.4401 3.7063
SM/J f 3.3057 0.0926 3.4891 3.1222
SM/J m 3.3448 0.0967 3.5364 3.1532


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.9743 0.079 3.1309 2.8177
AKR/J both 3.4606 0.0902 3.6394 3.2818
CBA/J both 3.4235 0.0963 3.6145 3.2326
DBA/2J both 3.7753 0.1341 4.0411 3.5094
FVB/NJ both 3.2284 0.0521 3.3316 3.1252
SJL/J both 4.1566 0.1463 4.4467 3.8665
SM/J both 3.3252 0.0669 3.4579 3.1926




  GWAS USING LINEAR MIXED MODELS