Project measure / variable:   Donahue3   duration_rearing

ID, description, units MPD:37714   duration_rearing   duration of rearing activity, 10 min test   [s]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - duration of rearing activity, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means23.2   s 34.6   s
Median of the strain means23.9   s 36.2   s
SD of the strain means± 7.00 ± 11.2
Coefficient of variation (CV)0.302 0.325
Min–max range of strain means1.62   –   38.8   s 0.613   –   53.7   s
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 11466.1392 11466.1392 100.5143 < 0.0001
strain 21 23964.0483 1141.1452 10.0035 < 0.0001
sex:strain 21 5538.947 263.7594 2.3122 0.0011
Residuals 308 35135.025 114.0748


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 1.62 2.84   8 1.01 1.75 -3.08
A/J m 0.613 0.794   8 0.281 1.3 -3.02
B6.A-Chr1 f 13.9 4.41   8 1.56 0.318 6.0, 19.5 -1.32
B6.A-Chr1 m 36.5 10.1   8 3.56 0.276 22.3, 52.8 0.17
B6.A-Chr10 f 19.2 9.04   8 3.2 0.471 6.2, 30.9 -0.57
B6.A-Chr10 m 44.1 12.9   8 4.58 0.293 28.1, 70.6 0.85
B6.A-Chr11 f 27.0 8.93   8 3.16 0.331 13.1, 43.9 0.55
B6.A-Chr11 m 36.9 14.7   8 5.21 0.4 14.8, 55.9 0.21
B6.A-Chr12 f 17.7 6.44   8 2.28 0.364 6.6, 26.9 -0.78
B6.A-Chr12 m 23.1 9.08   8 3.21 0.394 11.2, 39.5 -1.02
B6.A-Chr13 f 29.1 10.3   8 3.66 0.355 16.0, 44.9 0.85
B6.A-Chr13 m 44.0 12.0   8 4.25 0.273 26.4, 56.8 0.84
B6.A-Chr14 f 26.2 12.7   8 4.5 0.486 18.2, 56.6 0.43
B6.A-Chr14 m 36.9 11.9   8 4.19 0.321 21.1, 56.6 0.21
B6.A-Chr15 f 30.8 14.4   8 5.1 0.469 10.7, 52.4 1.09
B6.A-Chr15 m 28.8 8.44   8 2.98 0.293 18.4, 43.1 -0.51
B6.A-Chr16 f 24.2 9.87   8 3.49 0.407 15.2, 41.8 0.15
B6.A-Chr16 m 36.6 12.3   8 4.33 0.335 14.9, 47.0 0.18
B6.A-Chr17 f 26.0 6.58   8 2.33 0.254 17.6, 36.4 0.4
B6.A-Chr17 m 29.0 10.5   8 3.73 0.364 15.6, 42.7 -0.5
B6.A-Chr18 f 23.6 7.09   8 2.51 0.3 14.4, 34.8 0.06
B6.A-Chr18 m 41.5 10.4   8 3.67 0.25 28.1, 54.2 0.62
B6.A-Chr19 f 27.5 5.74   8 2.03 0.209 20.7, 33.2 0.62
B6.A-Chr19 m 49.0 11.5   8 4.05 0.234 33.4, 65.3 1.28
B6.A-Chr2 f 22.3 8.1   8 2.86 0.363 12.4, 36.8 -0.12
B6.A-Chr2 m 34.5 12.8   8 4.53 0.371 16.9, 52.2 -0.01
B6.A-Chr3 f 24.7 11.1   8 3.93 0.45 12.3, 48.8 0.22
B6.A-Chr3 m 35.9 13.5   8 4.77 0.375 17.1, 50.5 0.12
B6.A-Chr4 f 19.3 6.05   8 2.14 0.314 13.1, 30.8 -0.55
B6.A-Chr4 m 32.9 12.3   8 4.35 0.374 4.7, 45.5 -0.15
B6.A-Chr5 f 25.7 6.34   8 2.24 0.246 17.2, 36.8 0.36
B6.A-Chr5 m 53.7 20.1   8 7.09 0.374 35.2, 91.8 1.7
B6.A-Chr6 f 19.3 6.84   8 2.42 0.354 6.0, 27.4 -0.55
B6.A-Chr6 m 20.6 17.4   8 6.15 0.847 3.4, 57.1 -1.24
B6.A-Chr7 f 23.7 12.1   8 4.29 0.512 11.9, 43.8 0.08
B6.A-Chr7 m 28.8 12.1   8 4.26 0.419 13.9, 43.9 -0.51
B6.A-Chr8 f 21.8 6.16   8 2.18 0.282 14.6, 32.9 -0.2
B6.A-Chr8 m 33.1 4.69   8 1.66 0.142 27.8, 40.9 -0.13
B6.A-Chr9 f 22.7 6.84   8 2.42 0.302 14.5, 36.4 -0.07
B6.A-Chr9 m 27.7 14.5   8 5.11 0.521 13.2, 59.9 -0.61
B6.A-ChrX f 24.7 5.85   8 2.07 0.237 17.8, 33.5 0.22
B6.A-ChrX m 38.5 10.6   8 3.74 0.275 21.0, 56.2 0.35
C57BL/6J f 38.8 15.2   8 5.37 0.392 16.1, 59.3 2.23
C57BL/6J m 48.2 12.7   8 4.49 0.264 33.7, 73.5 1.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 1.625 3.7762 9.0553 0.0
A/J m 0.6125 3.7762 8.0428 0.0
B6.A-Chr1 f 13.8625 3.7762 21.2928 6.4322
B6.A-Chr1 m 36.5125 3.7762 43.9428 29.0822
B6.A-Chr10 f 19.175 3.7762 26.6053 11.7447
B6.A-Chr10 m 44.1125 3.7762 51.5428 36.6822
B6.A-Chr11 f 27.0125 3.7762 34.4428 19.5822
B6.A-Chr11 m 36.85 3.7762 44.2803 29.4197
B6.A-Chr12 f 17.7 3.7762 25.1303 10.2697
B6.A-Chr12 m 23.0625 3.7762 30.4928 15.6322
B6.A-Chr13 f 29.0875 3.7762 36.5178 21.6572
B6.A-Chr13 m 44.025 3.7762 51.4553 36.5947
B6.A-Chr14 f 26.2 3.7762 33.6303 18.7697
B6.A-Chr14 m 36.9375 3.7762 44.3678 29.5072
B6.A-Chr15 f 30.775 3.7762 38.2053 23.3447
B6.A-Chr15 m 28.7875 3.7762 36.2178 21.3572
B6.A-Chr16 f 24.2375 3.7762 31.6678 16.8072
B6.A-Chr16 m 36.5625 3.7762 43.9928 29.1322
B6.A-Chr17 f 25.9625 3.7762 33.3928 18.5322
B6.A-Chr17 m 28.9625 3.7762 36.3928 21.5322
B6.A-Chr18 f 23.6 3.7762 31.0303 16.1697
B6.A-Chr18 m 41.5125 3.7762 48.9428 34.0822
B6.A-Chr19 f 27.5 3.7762 34.9303 20.0697
B6.A-Chr19 m 49.0375 3.7762 56.4678 41.6072
B6.A-Chr2 f 22.3 3.7762 29.7303 14.8697
B6.A-Chr2 m 34.5375 3.7762 41.9678 27.1072
B6.A-Chr3 f 24.6625 3.7762 32.0928 17.2322
B6.A-Chr3 m 35.925 3.7762 43.3553 28.4947
B6.A-Chr4 f 19.275 3.7762 26.7053 11.8447
B6.A-Chr4 m 32.85 3.7762 40.2803 25.4197
B6.A-Chr5 f 25.725 3.7762 33.1553 18.2947
B6.A-Chr5 m 53.7 3.7762 61.1303 46.2697
B6.A-Chr6 f 19.325 3.7762 26.7553 11.8947
B6.A-Chr6 m 20.55 3.7762 27.9803 13.1197
B6.A-Chr7 f 23.7 3.7762 31.1303 16.2697
B6.A-Chr7 m 28.775 3.7762 36.2053 21.3447
B6.A-Chr8 f 21.825 3.7762 29.2553 14.3947
B6.A-Chr8 m 33.0875 3.7762 40.5178 25.6572
B6.A-Chr9 f 22.65 3.7762 30.0803 15.2197
B6.A-Chr9 m 27.75 3.7762 35.1803 20.3197
B6.A-ChrX f 24.7 3.7762 32.1303 17.2697
B6.A-ChrX m 38.4875 3.7762 45.9178 31.0572
C57BL/6J f 38.8125 3.7762 46.2428 31.3822
C57BL/6J m 48.2 3.7762 55.6303 40.7697


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 1.1188 2.6701 6.3728 0.0
B6.A-Chr1 both 25.1875 2.6701 30.4415 19.9335
B6.A-Chr10 both 31.6438 2.6701 36.8978 26.3897
B6.A-Chr11 both 31.9312 2.6701 37.1853 26.6772
B6.A-Chr12 both 20.3812 2.6701 25.6353 15.1272
B6.A-Chr13 both 36.5562 2.6701 41.8103 31.3022
B6.A-Chr14 both 31.5688 2.6701 36.8228 26.3147
B6.A-Chr15 both 29.7812 2.6701 35.0353 24.5272
B6.A-Chr16 both 30.4 2.6701 35.654 25.146
B6.A-Chr17 both 27.4625 2.6701 32.7165 22.2085
B6.A-Chr18 both 32.5563 2.6701 37.8103 27.3022
B6.A-Chr19 both 38.2688 2.6701 43.5228 33.0147
B6.A-Chr2 both 28.4188 2.6701 33.6728 23.1647
B6.A-Chr3 both 30.2938 2.6701 35.5478 25.0397
B6.A-Chr4 both 26.0625 2.6701 31.3165 20.8085
B6.A-Chr5 both 39.7125 2.6701 44.9665 34.4585
B6.A-Chr6 both 19.9375 2.6701 25.1915 14.6835
B6.A-Chr7 both 26.2375 2.6701 31.4915 20.9835
B6.A-Chr8 both 27.4562 2.6701 32.7103 22.2022
B6.A-Chr9 both 25.2 2.6701 30.454 19.946
B6.A-ChrX both 31.5937 2.6701 36.8478 26.3397
C57BL/6J both 43.5062 2.6701 48.7603 38.2522




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA