Project measure / variable:   Koide3   urination

ID, description, units MPD:35916   urination   urine puddles (0=absence; 1=presence) 10 min test   [score]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - urine puddles (0=absence; 1=presence) 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means0.367   score 0.375   score
Median of the strain means0.400   score 0.300   score
SD of the strain means± 0.227 ± 0.322
Coefficient of variation (CV)0.619 0.859
Min–max range of strain means0   –   0.800   score 0   –   1.00   score
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0042 0.0042 0.0231 0.8792
strain 11 9.3458 0.8496 4.7177 < 0.0001
sex:strain 11 7.7458 0.7042 3.91 < 0.0001
Residuals 216 38.9 0.1801


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 0.0 0.0   10 0.0 0.0 -1.62
BFM/2Ms m 0.7 0.483   10 0.153 0.69 1.01
BLG2/Ms f 0.5 0.527   10 0.167 1.05 0.59
BLG2/Ms m 0.8 0.422   10 0.133 0.527 1.32
C57BL/6J f 0.2 0.422   10 0.133 2.11 -0.73
C57BL/6J m 0.0 0.0   10 0.0 0.0 -1.16
CAST/EiJ f 0.4 0.516   10 0.163 1.29 0.15
CAST/EiJ m 0.1 0.316   10 0.1 3.16 -0.85
CHD/Ms f 0.5 0.527   10 0.167 1.05 0.59
CHD/Ms m 0.3 0.483   10 0.153 1.61 -0.23
HMI/Ms f 0.1 0.316   10 0.1 3.16 -1.17
HMI/Ms m 0.3 0.483   10 0.153 1.61 -0.23
JF1/MsJ f 0.8 0.422   10 0.133 0.527 1.91
JF1/MsJ m 0.1 0.316   10 0.1 3.16 -0.85
KJR/Ms f 0.4 0.516   10 0.163 1.29 0.15
KJR/Ms m 0.4 0.516   10 0.163 1.29 0.08
MSM/MsJ f 0.5 0.527   10 0.167 1.05 0.59
MSM/MsJ m 1.0 0.0   10 0.0 0.0 1.0, 1.0 1.94
NJL/Ms f 0.4 0.516   10 0.163 1.29 0.15
NJL/Ms m 0.3 0.483   10 0.153 1.61 -0.23
PGN2/Ms f 0.1 0.316   10 0.1 3.16 -1.17
PGN2/Ms m 0.0 0.0   10 0.0 0.0 -1.16
SWN/Ms f 0.5 0.527   10 0.167 1.05 0.59
SWN/Ms m 0.5 0.527   10 0.167 1.05 0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 0.0 0.1342 0.2645 -0.2645
BFM/2Ms m 0.7 0.1342 0.9645 0.4355
BLG2/Ms f 0.5 0.1342 0.7645 0.2355
BLG2/Ms m 0.8 0.1342 1.0645 0.5355
C57BL/6J f 0.2 0.1342 0.4645 -0.0645
C57BL/6J m 0.0 0.1342 0.2645 -0.2645
CAST/EiJ f 0.4 0.1342 0.6645 0.1355
CAST/EiJ m 0.1 0.1342 0.3645 -0.1645
CHD/Ms f 0.5 0.1342 0.7645 0.2355
CHD/Ms m 0.3 0.1342 0.5645 0.0355
HMI/Ms f 0.1 0.1342 0.3645 -0.1645
HMI/Ms m 0.3 0.1342 0.5645 0.0355
JF1/MsJ f 0.8 0.1342 1.0645 0.5355
JF1/MsJ m 0.1 0.1342 0.3645 -0.1645
KJR/Ms f 0.4 0.1342 0.6645 0.1355
KJR/Ms m 0.4 0.1342 0.6645 0.1355
MSM/MsJ f 0.5 0.1342 0.7645 0.2355
MSM/MsJ m 1.0 0.1342 1.2645 0.7355
NJL/Ms f 0.4 0.1342 0.6645 0.1355
NJL/Ms m 0.3 0.1342 0.5645 0.0355
PGN2/Ms f 0.1 0.1342 0.3645 -0.1645
PGN2/Ms m 0.0 0.1342 0.2645 -0.2645
SWN/Ms f 0.5 0.1342 0.7645 0.2355
SWN/Ms m 0.5 0.1342 0.7645 0.2355


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 0.35 0.0949 0.537 0.163
BLG2/Ms both 0.65 0.0949 0.837 0.463
C57BL/6J both 0.1 0.0949 0.287 -0.087
CAST/EiJ both 0.25 0.0949 0.437 0.063
CHD/Ms both 0.4 0.0949 0.587 0.213
HMI/Ms both 0.2 0.0949 0.387 0.013
JF1/MsJ both 0.45 0.0949 0.637 0.263
KJR/Ms both 0.4 0.0949 0.587 0.213
MSM/MsJ both 0.75 0.0949 0.937 0.563
NJL/Ms both 0.35 0.0949 0.537 0.163
PGN2/Ms both 0.05 0.0949 0.237 -0.137
SWN/Ms both 0.5 0.0949 0.687 0.313




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA