Project measure / variable:   Jaxpheno7   activity

ID, description, units MPD:34909   activity   spontaneous activity level in view-jar (score 0-3)   [score]  
Data set, strains Jaxpheno7   inbred   6 strains     sex: m     age: 10wks
Procedure observation (SHIRPA)
Ontology mappings

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  STRAIN COMPARISON PLOT


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested6 strains
Mean of the strain means1.51   score
Median of the strain means1.43   score
SD of the strain means± 0.292
Coefficient of variation (CV)0.193
Min–max range of strain means1.17   –   1.91   score
Mean sample size per strain8.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 5 3.7522 0.7504 3.1392 0.0163
Residuals 45 10.7576 0.2391


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
A/J m 1.33 0.516   6 0.211 0.387 1.0, 2.0 -0.63
AKR/J m 1.82 0.405   11 0.122 0.222 1.0, 2.0 1.04
BALB/cJ m 1.91 0.539   11 0.163 0.283 1.0, 3.0 1.35
C3H/HeJ m 1.17 0.408   6 0.167 0.35 1.0, 2.0 -1.18
C57BL/6J m 1.5 0.548   6 0.224 0.365 1.0, 2.0 -0.05
DBA/2J m 1.36 0.505   11 0.152 0.37 1.0, 2.0 -0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1.3333 0.1996 1.7354 0.9313
AKR/J m 1.8182 0.1474 2.1151 1.5213
BALB/cJ m 1.9091 0.1474 2.206 1.6122
C3H/HeJ m 1.1667 0.1996 1.5687 0.7646
C57BL/6J m 1.5 0.1996 1.902 1.098
DBA/2J m 1.3636 0.1474 1.6606 1.0667




  GWAS USING LINEAR MIXED MODELS

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