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Project measure / variable:   Jax5   litter_order

ID, description, units MPD:31481   litter_order   litter number (order) (local parameter)   [n]  
Data set, strains Jax5   inbred   35 strains     sex: f     age: 6-40wks
Procedure colony observation
Ontology mappings


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  STRAIN COMPARISON PLOT
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Jax5 - litter number (order) (local parameter)



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested35 strains
Mean of the strain means2.69   n
Median of the strain means2.61   n
SD of the strain means± 0.378
Coefficient of variation (CV)0.140
Min–max range of strain means2.03   –   3.34   n
Mean sample size per strain185.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 34 890.5324 26.1921 12.2281 < 0.0001
Residuals 6416 13742.7812 2.142


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J f 2.37 1.34   150 0.11 0.566 1.0, 7.0 -0.85
129S1/SvImJ f 2.96 1.56   213 0.107 0.526 1.0, 7.0 0.71
129X1/SvJ f 2.91 1.51   213 0.104 0.521 1.0, 8.0 0.58
A/J f 2.73 1.44   210 0.0996 0.528 1.0, 7.0 0.1
AKR/J f 2.32 1.16   164 0.0907 0.5 1.0, 6.0 -0.98
B6.129P2-Apoetm1Unc/J f 2.58 1.39   191 0.1 0.538 1.0, 8.0 -0.29
B6(Cg)-Tyrc-2J/J f 2.37 1.27   59 0.166 0.536 1.0, 6.0 -0.85
BALB/cByJ f 2.38 1.25   143 0.105 0.524 1.0, 7.0 -0.82
BALB/cJ f 2.63 1.33   198 0.0945 0.506 1.0, 6.0 -0.16
C3HeB/FeJ f 3.34 1.78   180 0.133 0.532 1.0, 7.0 1.72
C3H/HeJ f 2.36 1.16   174 0.0878 0.49 1.0, 6.0 -0.88
C3H/HeOuJ f 2.83 1.46   211 0.101 0.516 1.0, 6.0 0.37
C57BL/10J f 2.61 1.36   190 0.0986 0.522 1.0, 7.0 -0.21
C57BL/6J f 3.24 1.74   260 0.108 0.536 1.0, 8.0 1.45
C57BLKS/J f 2.14 1.19   119 0.109 0.554 1.0, 6.0 -1.46
C57L/J f 2.41 1.32   128 0.117 0.551 1.0, 6.0 -0.74
CAST/EiJ f 2.55 1.38   177 0.104 0.542 1.0, 7.0 -0.37
CBA/CaJ f 2.73 1.41   202 0.0993 0.517 1.0, 7.0 0.1
CBA/J f 3.33 1.74   265 0.107 0.523 1.0, 8.0 1.69
DBA/1J f 3.2 1.68   255 0.105 0.526 1.0, 8.0 1.35
DBA/1LacJ f 3.22 1.67   254 0.105 0.52 1.0, 7.0 1.4
DBA/2J f 3.25 1.66   261 0.103 0.511 1.0, 7.0 1.48
FVB/NJ f 2.96 1.46   240 0.0941 0.493 1.0, 7.0 0.71
KK/HlJ f 2.35 1.23   78 0.139 0.522 1.0, 5.0 -0.9
LP/J f 2.61 1.38   187 0.101 0.526 1.0, 7.0 -0.21
MRL/MpJ f 2.29 1.07   168 0.0828 0.469 1.0, 5.0 -1.06
NOD.CB17-Prkdcscid/J f 2.66 1.36   203 0.0952 0.51 1.0, 7.0 -0.08
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 2.95 1.63   95 0.167 0.552 1.0, 7.0 0.68
NOD/ShiLtJ f 2.39 1.2   175 0.0909 0.503 1.0, 6.0 -0.8
NZB/BlNJ f 2.03 1.05   127 0.0928 0.515 1.0, 5.0 -1.75
NZW/LacJ f 2.6 1.32   194 0.0948 0.508 1.0, 6.0 -0.24
PL/J f 3.12 1.76   215 0.12 0.563 1.0, 8.0 1.13
SJL/J f 3.19 1.69   251 0.107 0.529 1.0, 8.0 1.32
SM/J f 2.14 1.12   136 0.0963 0.525 1.0, 5.0 -1.46
SWR/J f 2.44 1.31   165 0.102 0.536 1.0, 6.0 -0.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J f 2.3733 0.1195 2.6076 2.1391
129S1/SvImJ f 2.9624 0.1003 3.159 2.7659
129X1/SvJ f 2.9061 0.1003 3.1027 2.7095
A/J f 2.7333 0.101 2.9313 2.5354
AKR/J f 2.3232 0.1143 2.5472 2.0991
B6.129P2-Apoetm1Unc/J f 2.5812 0.1059 2.7887 2.3736
B6(Cg)-Tyrc-2J/J f 2.3729 0.1905 2.7464 1.9994
BALB/cByJ f 2.3846 0.1224 2.6245 2.1447
BALB/cJ f 2.6263 0.104 2.8302 2.4224
C3HeB/FeJ f 3.3444 0.1091 3.5583 3.1306
C3H/HeJ f 2.3621 0.111 2.5796 2.1446
C3H/HeOuJ f 2.8341 0.1008 3.0316 2.6366
C57BL/10J f 2.6053 0.1062 2.8134 2.3971
C57BL/6J f 3.2385 0.0908 3.4164 3.0605
C57BLKS/J f 2.1429 0.1342 2.4059 1.8799
C57L/J f 2.4063 0.1294 2.6598 2.1527
CAST/EiJ f 2.548 0.11 2.7637 2.3324
CBA/CaJ f 2.7277 0.103 2.9296 2.5259
CBA/J f 3.3283 0.0899 3.5045 3.1521
DBA/1J f 3.1961 0.0917 3.3757 3.0164
DBA/1LacJ f 3.2205 0.0918 3.4005 3.0405
DBA/2J f 3.2529 0.0906 3.4305 3.0753
FVB/NJ f 2.9583 0.0945 3.1435 2.7731
KK/HlJ f 2.3462 0.1657 2.671 2.0213
LP/J f 2.615 0.107 2.8248 2.4052
MRL/MpJ f 2.2857 0.1129 2.5071 2.0644
NOD.CB17-Prkdcscid/J f 2.6601 0.1027 2.8615 2.4587
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 2.9474 0.1502 3.2417 2.653
NOD/ShiLtJ f 2.3886 0.1106 2.6054 2.1717
NZB/BlNJ f 2.0315 0.1299 2.2861 1.7769
NZW/LacJ f 2.5979 0.1051 2.8039 2.392
PL/J f 3.1209 0.0998 3.3166 2.9253
SJL/J f 3.1912 0.0924 3.3723 3.0101
SM/J f 2.1397 0.1255 2.3857 1.8937
SWR/J f 2.4424 0.1139 2.6658 2.2191




  GWAS USING LINEAR MIXED MODELS