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Project measure / variable:   Xing1   ST_M06

ID, description, units MPD:24941   ST_M06   interval ST   [ms]  at age 6mo  
Data set, strains Xing1   inbred   28 strains     sex: both     age: 26wks
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  STRAIN COMPARISON PLOT
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Xing1 - interval ST at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains27 strains
Mean of the strain means32.7   ms 32.1   ms
Median of the strain means32.5   ms 32.2   ms
SD of the strain means± 2.12 ± 2.13
Coefficient of variation (CV)0.0650 0.0664
Min–max range of strain means28.6   –   38.6   ms 27.1   –   38.8   ms
Mean sample size per strain7.5   mice 7.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 33.0284 33.0284 3.7681 0.053
strain 26 1611.492 61.9805 7.0711 < 0.0001
sex:strain 26 203.5161 7.8275 0.893 0.6192
Residuals 348 3050.3126 8.7653


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 32.2 3.15   8 1.11 0.0976 29.1, 37.2 -0.22
129S1/SvImJ m 33.4 4.01   7 1.52 0.12 27.7, 39.2 0.6
A/J f 36.2 3.05   8 1.08 0.0842 33.2, 41.3 1.66
A/J m 34.9 6.68   8 2.36 0.191 28.5, 50.0 1.3
AKR/J f 31.2 1.82   8 0.644 0.0584 28.6, 33.8 -0.69
AKR/J m 32.2 2.37   7 0.895 0.0735 30.2, 36.3 0.03
BALB/cByJ f 32.3 2.25   7 0.85 0.0696 30.4, 36.5 -0.17
BALB/cByJ m 32.8 1.04   8 0.369 0.0319 31.6, 34.3 0.31
BTBR T+ Itpr3tf/J f 32.8 2.9   6 1.18 0.0884 27.7, 35.6 0.06
BUB/BnJ f 28.6 4.15   7 1.57 0.145 23.5, 34.4 -1.92
BUB/BnJ m 29.9 3.12   7 1.18 0.105 24.0, 32.7 -1.05
C3H/HeJ f 29.4 3.92   8 1.39 0.134 23.9, 35.4 -1.54
C3H/HeJ m 29.6 2.82   7 1.07 0.0954 26.4, 34.0 -1.19
C57BL/10J f 33.3 3.6   7 1.36 0.108 26.7, 37.3 0.3
C57BL/10J m 32.1 1.44   8 0.508 0.0447 29.7, 33.9 -0.01
C57BL/6J f 32.8 1.64   8 0.581 0.0502 29.8, 34.9 0.06
C57BL/6J m 32.4 1.5   8 0.531 0.0463 30.4, 34.9 0.13
C57BLKS/J f 35.0 2.99   8 1.06 0.0854 31.1, 40.3 1.1
C57BLKS/J m 34.8 1.72   7 0.649 0.0493 33.1, 37.8 1.25
C57BR/cdJ f 32.0 1.74   7 0.659 0.0544 29.6, 34.1 -0.31
C57BR/cdJ m 32.4 2.33   7 0.879 0.0718 27.9, 34.4 0.13
C57L/J f 32.5 0.94   8 0.332 0.029 31.0, 33.5 -0.08
C57L/J m 32.0 1.41   8 0.497 0.044 30.1, 34.4 -0.06
CBA/J f 32.1 1.61   7 0.61 0.0502 30.7, 35.4 -0.27
CBA/J m 33.0 1.66   8 0.588 0.0503 31.3, 36.5 0.41
DBA/2J f 31.9 2.39   8 0.845 0.075 27.7, 35.4 -0.36
DBA/2J m 30.6 2.64   8 0.932 0.0861 27.9, 35.6 -0.72
FVB/NJ f 32.0 2.52   8 0.893 0.0789 27.9, 35.1 -0.31
FVB/NJ m 29.4 1.43   7 0.541 0.0487 27.5, 31.1 -1.28
KK/HlJ f 32.9 2.84   8 1.0 0.0862 29.6, 36.9 0.11
KK/HlJ m 32.5 3.59   8 1.27 0.11 26.6, 37.8 0.17
LP/J f 32.5 2.38   6 0.974 0.0735 28.5, 35.1 -0.08
LP/J m 31.6 2.01   8 0.711 0.0637 28.9, 35.0 -0.25
MRL/MpJ f 33.9 2.99   6 1.22 0.0882 30.1, 38.0 0.58
MRL/MpJ m 30.1 2.17   8 0.766 0.072 26.8, 33.4 -0.95
NOD.B10Sn-H2b/J f 29.9 2.15   6 0.879 0.072 27.4, 33.4 -1.3
NOD.B10Sn-H2b/J m 32.0 1.78   4 0.888 0.0554 29.7, 33.7 -0.06
NON/ShiLtJ f 34.8 1.93   8 0.681 0.0553 33.0, 38.4 1.0
NON/ShiLtJ m 32.2 4.86   8 1.72 0.151 22.7, 38.3 0.03
NZO/HlLtJ f 32.5 2.14   8 0.758 0.066 29.6, 36.4 -0.08
NZO/HlLtJ m 32.3 2.76   7 1.04 0.0855 28.6, 36.2 0.08
NZW/LacJ f 35.0 7.1   8 2.51 0.203 26.7, 49.0 1.1
NZW/LacJ m 33.8 3.04   7 1.15 0.09 29.5, 39.2 0.78
P/J f 32.0 1.36   5 0.607 0.0424 30.0, 33.3 -0.31
P/J m 32.9 1.31   7 0.497 0.0399 31.3, 35.3 0.36
PL/J f 31.0 2.61   10 0.824 0.084 26.4, 34.3 -0.79
PL/J m 31.0 1.47   5 0.659 0.0475 29.1, 33.1 -0.53
RIIIS/J f 38.6 4.68   8 1.65 0.121 33.3, 46.0 2.79
RIIIS/J m 38.8 4.17   7 1.58 0.108 31.0, 43.3 3.13
SJL/J f 29.8 2.93   8 1.04 0.0983 26.0, 33.3 -1.35
SJL/J m 27.1 2.92   8 1.03 0.108 25.4, 34.1 -2.36
SM/J f 35.1 2.12   8 0.75 0.0605 31.9, 38.1 1.15
SM/J m 31.7 3.46   8 1.22 0.109 26.6, 35.6 -0.2
SWR/J f 32.4 1.37   8 0.483 0.0422 30.3, 34.4 -0.13
SWR/J m 32.0 2.72   8 0.961 0.0849 28.4, 36.1 -0.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 32.25 1.0467 34.3087 30.1913
129S1/SvImJ m 33.4286 1.119 35.6294 31.2277
A/J f 36.2375 1.0467 38.2962 34.1788
A/J m 34.8875 1.0467 36.9462 32.8288
AKR/J f 31.2 1.0467 33.2587 29.1413
AKR/J m 32.2 1.119 34.4009 29.9991
BALB/cByJ f 32.3 1.119 34.5009 30.0991
BALB/cByJ m 32.8 1.0467 34.8587 30.7413
BUB/BnJ f 28.6143 1.119 30.8152 26.4134
BUB/BnJ m 29.8571 1.119 32.058 27.6563
C3H/HeJ f 29.35 1.0467 31.4087 27.2913
C3H/HeJ m 29.5571 1.119 31.758 27.3563
C57BL/10J f 33.2857 1.119 35.4866 31.0848
C57BL/10J m 32.0875 1.0467 34.1462 30.0288
C57BL/6J f 32.7875 1.0467 34.8462 30.7288
C57BL/6J m 32.425 1.0467 34.4837 30.3663
C57BLKS/J f 35.025 1.0467 37.0837 32.9663
C57BLKS/J m 34.8143 1.119 37.0152 32.6134
C57BR/cdJ f 32.0143 1.119 34.2152 29.8134
C57BR/cdJ m 32.3857 1.119 34.5866 30.1848
C57L/J f 32.45 1.0467 34.5087 30.3913
C57L/J m 31.9625 1.0467 34.0212 29.9038
CBA/J f 32.1429 1.119 34.3437 29.942
CBA/J m 33.05 1.0467 35.1087 30.9913
DBA/2J f 31.875 1.0467 33.9337 29.8163
DBA/2J m 30.625 1.0467 32.6837 28.5663
FVB/NJ f 32.0 1.0467 34.0587 29.9413
FVB/NJ m 29.3857 1.119 31.5866 27.1848
KK/HlJ f 32.9 1.0467 34.9587 30.8413
KK/HlJ m 32.5125 1.0467 34.5712 30.4538
LP/J f 32.45 1.2087 34.8272 30.0728
LP/J m 31.6125 1.0467 33.6712 29.5538
MRL/MpJ f 33.8667 1.2087 36.2439 31.4895
MRL/MpJ m 30.125 1.0467 32.1837 28.0663
NOD.B10Sn-H2b/J f 29.9 1.2087 32.2772 27.5228
NOD.B10Sn-H2b/J m 32.05 1.4803 34.9615 29.1385
NON/ShiLtJ f 34.8375 1.0467 36.8962 32.7788
NON/ShiLtJ m 32.225 1.0467 34.2837 30.1663
NZO/HlLtJ f 32.4875 1.0467 34.5462 30.4288
NZO/HlLtJ m 32.3143 1.119 34.5152 30.1134
NZW/LacJ f 34.9625 1.0467 37.0212 32.9038
NZW/LacJ m 33.8429 1.119 36.0437 31.642
P/J f 32.0 1.324 34.6041 29.3959
P/J m 32.9286 1.119 35.1294 30.7277
PL/J f 31.0 0.9362 32.8414 29.1586
PL/J m 31.0 1.324 33.6041 28.3959
RIIIS/J f 38.625 1.0467 40.6837 36.5663
RIIIS/J m 38.7571 1.119 40.958 36.5563
SJL/J f 29.8125 1.0467 31.8712 27.7538
SJL/J m 27.1 1.0467 29.1587 25.0413
SM/J f 35.1 1.0467 37.1587 33.0413
SM/J m 31.675 1.0467 33.7337 29.6163
SWR/J f 32.3875 1.0467 34.4462 30.3288
SWR/J m 32.025 1.0467 34.0837 29.9663


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 32.8393 0.7661 34.3461 31.3325
A/J both 35.5625 0.7402 37.0182 34.1068
AKR/J both 31.7 0.7661 33.2068 30.1932
BALB/cByJ both 32.55 0.7661 34.0568 31.0432
BUB/BnJ both 29.2357 0.7913 30.792 27.6795
C3H/HeJ both 29.4536 0.7661 30.9604 27.9467
C57BL/10J both 32.6866 0.7661 34.1934 31.1798
C57BL/6J both 32.6063 0.7402 34.062 31.1505
C57BLKS/J both 34.9196 0.7661 36.4265 33.4128
C57BR/cdJ both 32.2 0.7913 33.7563 30.6437
C57L/J both 32.2063 0.7402 33.662 30.7505
CBA/J both 32.5964 0.7661 34.1033 31.0896
DBA/2J both 31.25 0.7402 32.7057 29.7943
FVB/NJ both 30.6929 0.7661 32.1997 29.186
KK/HlJ both 32.7063 0.7402 34.162 31.2505
LP/J both 32.0313 0.7995 33.6036 30.4589
MRL/MpJ both 31.9958 0.7995 33.5682 30.4235
NOD.B10Sn-H2b/J both 30.975 0.9555 32.8544 29.0956
NON/ShiLtJ both 33.5313 0.7402 34.987 32.0755
NZO/HlLtJ both 32.4009 0.7661 33.9077 30.8941
NZW/LacJ both 34.4027 0.7661 35.9095 32.8958
P/J both 32.4643 0.8668 34.1691 30.7595
PL/J both 31.0 0.8108 32.5947 29.4053
RIIIS/J both 38.6911 0.7661 40.1979 37.1842
SJL/J both 28.4563 0.7402 29.912 27.0005
SM/J both 33.3875 0.7402 34.8432 31.9318
SWR/J both 32.2063 0.7402 33.662 30.7505




  GWAS USING LINEAR MIXED MODELS