Project measure / variable:   Peters4   BASO_M12

ID, description, units MPD:24326   BASO_M12   basophil count (BASO; units per volume x 103)   [n/µL]  at age 12mo  
Data set, strains Peters4   inbred   30 strains     sex: both     age: 52wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Peters4 - basophil count (BASO; units per volume x 103) at age 12mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means0.0257   n/µL 0.0268   n/µL
Median of the strain means0.0219   n/µL 0.0236   n/µL
SD of the strain means± 0.0131 ± 0.0132
Coefficient of variation (CV)0.511 0.494
Min–max range of strain means0.00625   –   0.0571   n/µL 0.0100   –   0.0614   n/µL
Mean sample size per strain7.8   mice 7.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0 0.0 0.0323 0.8574
strain 29 0.0551 0.0019 12.6136 < 0.0001
sex:strain 29 0.0186 0.0006 4.2468 < 0.0001
Residuals 392 0.0591 0.0002


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0187 0.00835   8 0.00295 0.445 0.01, 0.03 -0.53
129S1/SvImJ m 0.0171 0.0138   7 0.00522 0.805 -0.73
A/J f 0.0186 0.009   7 0.0034 0.484 0.01, 0.03 -0.54
A/J m 0.0233 0.0197   6 0.00803 0.843 0.01, 0.06 -0.26
BALB/cByJ f 0.03 0.01   7 0.00378 0.333 0.01, 0.04 0.33
BALB/cByJ m 0.0514 0.0204   7 0.00769 0.396 0.02, 0.08 1.86
BTBR T+ Itpr3tf/J f 0.035 0.00756   8 0.00267 0.216 0.03, 0.05 0.71
BTBR T+ Itpr3tf/J m 0.0387 0.0113   8 0.00398 0.291 0.02, 0.05 0.9
BUB/BnJ f 0.0429 0.0138   7 0.00522 0.322 0.02, 0.06 1.31
BUB/BnJ m 0.0417 0.0172   6 0.00703 0.413 0.02, 0.06 1.13
C3H/HeJ f 0.01 0.0   8 0.0 0.0 0.01, 0.01 -1.19
C3H/HeJ m 0.01 0.00535   8 0.00189 0.535 -1.27
C57BL/10J f 0.0433 0.0194   9 0.00645 0.447 0.02, 0.08 1.34
C57BL/10J m 0.0375 0.0139   8 0.00491 0.37 0.02, 0.06 0.81
C57BL/6J f 0.0186 0.0168   7 0.00634 0.903 -0.54
C57BL/6J m 0.0417 0.0147   6 0.00601 0.353 0.02, 0.06 1.13
C57BLKS/J f 0.0187 0.00641   8 0.00227 0.342 0.01, 0.03 -0.53
C57BLKS/J m 0.0213 0.0173   8 0.00611 0.813 0.01, 0.06 -0.41
C57BR/cdJ f 0.0363 0.0151   8 0.00532 0.415 0.02, 0.07 0.81
C57BR/cdJ m 0.0387 0.0155   8 0.00549 0.401 0.02, 0.06 0.9
C57L/J f 0.0213 0.00835   8 0.00295 0.393 0.01, 0.04 -0.33
C57L/J m 0.0238 0.00744   8 0.00263 0.313 0.01, 0.03 -0.22
CAST/EiJ f 0.0188 0.00835   8 0.00295 0.445 0.01, 0.03 -0.52
CAST/EiJ m 0.0367 0.00816   6 0.00333 0.223 0.03, 0.05 0.75
CBA/J f 0.01 0.00535   8 0.00189 0.535 -1.19
CBA/J m 0.0186 0.0069   7 0.00261 0.372 0.01, 0.03 -0.62
DBA/2J f 0.0363 0.0177   8 0.00625 0.488 0.01, 0.07 0.81
DBA/2J m 0.0157 0.00787   7 0.00297 0.501 0.01, 0.03 -0.84
FVB/NJ f 0.0137 0.00518   8 0.00183 0.376 0.01, 0.02 -0.91
FVB/NJ m 0.0125 0.00886   8 0.00313 0.709 -1.08
KK/HlJ f 0.03 0.0129   7 0.00488 0.43 0.01, 0.05 0.33
KK/HlJ m 0.0136 0.00809   11 0.00244 0.593 -1.0
LP/J f 0.0563 0.0207   8 0.0073 0.367 0.03, 0.1 2.33
LP/J m 0.0614 0.0285   7 0.0108 0.465 0.03, 0.11 2.62
MRL/MpJ f 0.0225 0.00886   8 0.00313 0.394 0.01, 0.04 -0.24
MRL/MpJ m 0.0275 0.0158   8 0.00559 0.575 0.06
NOD.B10Sn-H2b/J f 0.025 0.0107   8 0.00378 0.428 0.01, 0.04 -0.05
NOD.B10Sn-H2b/J m 0.03 0.0169   8 0.00598 0.563 0.01, 0.06 0.24
NON/ShiLtJ f 0.02 0.00707   9 0.00236 0.354 0.01, 0.03 -0.43
NON/ShiLtJ m 0.0129 0.00488   7 0.00184 0.38 0.01, 0.02 -1.05
NZO/HlLtJ f 0.035 0.00548   6 0.00224 0.156 0.03, 0.04 0.71
NZO/HlLtJ m 0.034 0.0114   5 0.0051 0.335 0.02, 0.05 0.55
NZW/LacJ f 0.0375 0.0149   8 0.00526 0.397 0.01, 0.06 0.9
NZW/LacJ m 0.0138 0.00744   8 0.00263 0.541 0.01, 0.03 -0.98
P/J f 0.0157 0.00787   7 0.00297 0.501 0.01, 0.03 -0.76
P/J m 0.0467 0.0289   3 0.0167 0.619 0.03, 0.08 1.51
PL/J f 0.0157 0.00787   7 0.00297 0.501 0.01, 0.03 -0.76
PL/J m 0.015 0.00926   8 0.00327 0.617 -0.89
PWD/PhJ f 0.01 0.00756   8 0.00267 0.756 -1.19
PWD/PhJ m 0.0175 0.00886   8 0.00313 0.507 0.01, 0.03 -0.7
RIIIS/J f 0.00625 0.00518   8 0.00183 0.828 -1.48
RIIIS/J m 0.0143 0.00535   7 0.00202 0.374 0.01, 0.02 -0.94
SJL/J f 0.0286 0.0177   7 0.0067 0.62 0.01, 0.06 0.22
SJL/J m 0.025 0.012   8 0.00423 0.478 0.01, 0.04 -0.13
SM/J f 0.0225 0.00707   8 0.0025 0.314 0.01, 0.03 -0.24
SM/J m 0.0187 0.00641   8 0.00227 0.342 0.01, 0.03 -0.61
SWR/J f 0.0571 0.0198   7 0.00747 0.346 0.02, 0.08 2.4
SWR/J m 0.02 0.00756   8 0.00267 0.378 0.01, 0.03 -0.51
WSB/EiJ f 0.0156 0.00527   9 0.00176 0.339 0.01, 0.02 -0.77
WSB/EiJ m 0.0238 0.0119   8 0.0042 0.5 0.01, 0.04 -0.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0187 0.0043 0.0273 0.0102
129S1/SvImJ m 0.0171 0.0046 0.0263 0.008
A/J f 0.0186 0.0046 0.0277 0.0094
A/J m 0.0233 0.005 0.0332 0.0135
BALB/cByJ f 0.03 0.0046 0.0391 0.0209
BALB/cByJ m 0.0514 0.0046 0.0606 0.0423
BTBR T+ Itpr3tf/J f 0.035 0.0043 0.0435 0.0265
BTBR T+ Itpr3tf/J m 0.0387 0.0043 0.0473 0.0302
BUB/BnJ f 0.0429 0.0046 0.052 0.0337
BUB/BnJ m 0.0417 0.005 0.0515 0.0318
C3H/HeJ f 0.01 0.0043 0.0185 0.0015
C3H/HeJ m 0.01 0.0043 0.0185 0.0015
C57BL/10J f 0.0433 0.0041 0.0514 0.0353
C57BL/10J m 0.0375 0.0043 0.046 0.029
C57BL/6J f 0.0186 0.0046 0.0277 0.0094
C57BL/6J m 0.0417 0.005 0.0515 0.0318
C57BLKS/J f 0.0187 0.0043 0.0273 0.0102
C57BLKS/J m 0.0212 0.0043 0.0298 0.0127
C57BR/cdJ f 0.0362 0.0043 0.0448 0.0277
C57BR/cdJ m 0.0388 0.0043 0.0473 0.0302
C57L/J f 0.0212 0.0043 0.0298 0.0127
C57L/J m 0.0238 0.0043 0.0323 0.0152
CAST/EiJ f 0.0187 0.0043 0.0273 0.0102
CAST/EiJ m 0.0367 0.005 0.0465 0.0268
CBA/J f 0.01 0.0043 0.0185 0.0015
CBA/J m 0.0186 0.0046 0.0277 0.0094
DBA/2J f 0.0362 0.0043 0.0448 0.0277
DBA/2J m 0.0157 0.0046 0.0248 0.0066
FVB/NJ f 0.0137 0.0043 0.0223 0.0052
FVB/NJ m 0.0125 0.0043 0.021 0.004
KK/HlJ f 0.03 0.0046 0.0391 0.0209
KK/HlJ m 0.0136 0.0037 0.0209 0.0064
LP/J f 0.0562 0.0043 0.0648 0.0477
LP/J m 0.0614 0.0046 0.0706 0.0523
MRL/MpJ f 0.0225 0.0043 0.031 0.014
MRL/MpJ m 0.0275 0.0043 0.036 0.019
NOD.B10Sn-H2b/J f 0.025 0.0043 0.0335 0.0165
NOD.B10Sn-H2b/J m 0.03 0.0043 0.0385 0.0215
NON/ShiLtJ f 0.02 0.0041 0.028 0.012
NON/ShiLtJ m 0.0129 0.0046 0.022 0.0037
NZO/HlLtJ f 0.035 0.005 0.0449 0.0251
NZO/HlLtJ m 0.034 0.0055 0.0448 0.0232
NZW/LacJ f 0.0375 0.0043 0.046 0.029
NZW/LacJ m 0.0138 0.0043 0.0223 0.0052
P/J f 0.0157 0.0046 0.0248 0.0066
P/J m 0.0467 0.0071 0.0606 0.0327
PL/J f 0.0157 0.0046 0.0248 0.0066
PL/J m 0.015 0.0043 0.0235 0.0065
PWD/PhJ f 0.01 0.0043 0.0185 0.0015
PWD/PhJ m 0.0175 0.0043 0.026 0.009
RIIIS/J f 0.0062 0.0043 0.0148 0.0
RIIIS/J m 0.0143 0.0046 0.0234 0.0052
SJL/J f 0.0286 0.0046 0.0377 0.0194
SJL/J m 0.025 0.0043 0.0335 0.0165
SM/J f 0.0225 0.0043 0.031 0.014
SM/J m 0.0187 0.0043 0.0273 0.0102
SWR/J f 0.0571 0.0046 0.0663 0.048
SWR/J m 0.02 0.0043 0.0285 0.0115
WSB/EiJ f 0.0156 0.0041 0.0236 0.0075
WSB/EiJ m 0.0238 0.0043 0.0323 0.0152


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0179 0.0032 0.0242 0.0117
A/J both 0.021 0.0034 0.0277 0.0142
BALB/cByJ both 0.0407 0.0033 0.0472 0.0343
BTBR T+ Itpr3tf/J both 0.0369 0.0031 0.0429 0.0308
BUB/BnJ both 0.0423 0.0034 0.049 0.0355
C3H/HeJ both 0.01 0.0031 0.016 0.004
C57BL/10J both 0.0404 0.003 0.0463 0.0346
C57BL/6J both 0.0301 0.0034 0.0368 0.0234
C57BLKS/J both 0.02 0.0031 0.026 0.014
C57BR/cdJ both 0.0375 0.0031 0.0435 0.0315
C57L/J both 0.0225 0.0031 0.0285 0.0165
CAST/EiJ both 0.0277 0.0033 0.0342 0.0212
CBA/J both 0.0143 0.0032 0.0205 0.008
DBA/2J both 0.026 0.0032 0.0322 0.0197
FVB/NJ both 0.0131 0.0031 0.0192 0.0071
KK/HlJ both 0.0218 0.003 0.0277 0.016
LP/J both 0.0588 0.0032 0.0651 0.0526
MRL/MpJ both 0.025 0.0031 0.031 0.019
NOD.B10Sn-H2b/J both 0.0275 0.0031 0.0335 0.0215
NON/ShiLtJ both 0.0164 0.0031 0.0225 0.0103
NZO/HlLtJ both 0.0345 0.0037 0.0418 0.0272
NZW/LacJ both 0.0256 0.0031 0.0317 0.0196
P/J both 0.0312 0.0042 0.0395 0.0229
PL/J both 0.0154 0.0032 0.0216 0.0091
PWD/PhJ both 0.0137 0.0031 0.0198 0.0077
RIIIS/J both 0.0103 0.0032 0.0165 0.004
SJL/J both 0.0268 0.0032 0.033 0.0205
SM/J both 0.0206 0.0031 0.0267 0.0146
SWR/J both 0.0386 0.0032 0.0448 0.0323
WSB/EiJ both 0.0197 0.003 0.0255 0.0138




  GWAS USING LINEAR MIXED MODELS