Project measure / variable:   Jaxpheno4   pct_BASO16

ID, description, units MPD:22939   pct_BASO16   basophil differential (BASO; percentage of total WBC)   [%]  at age age 16wks  
Data set, strains Jaxpheno4   inbred   9 strains     sex: both     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - basophil differential (BASO; percentage of total WBC) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.358   % 0.401   %
Median of the strain means0.310   % 0.370   %
SD of the strain means± 0.103 ± 0.179
Coefficient of variation (CV)0.287 0.448
Min–max range of strain means0.237   –   0.500   % 0.190   –   0.755   %
Mean sample size per strain15.7   mice 15.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.203 0.203 2.624 0.1064
strain 8 4.5542 0.5693 7.3601 < 0.0001
sex:strain 8 0.8779 0.1097 1.4187 0.1881
Residuals 286 22.121 0.0773


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 0.294 0.198   16 0.0496 0.675 -0.62
B6D2F1/J m 0.19 0.0994   10 0.0314 0.523 0.1, 0.4 -1.17
BALB/cByJ f 0.5 0.303   21 0.0662 0.607 0.1, 1.3 1.39
BALB/cByJ m 0.586 0.253   22 0.054 0.432 0.2, 1.2 1.03
C3H/HeJ f 0.47 0.134   10 0.0423 0.285 0.2, 0.7 1.09
C3H/HeJ m 0.755 0.601   11 0.181 0.796 0.2, 2.5 1.98
C57BL/6J f 0.237 0.126   35 0.0213 0.532 -1.17
C57BL/6J m 0.207 0.157   30 0.0287 0.762 -1.08
CBA/J f 0.286 0.193   22 0.0412 0.676 0.1, 0.7 -0.7
CBA/J m 0.37 0.409   23 0.0854 1.11 -0.17
DBA/2J f 0.436 0.121   11 0.0364 0.276 0.2, 0.7 0.76
DBA/2J m 0.391 0.0831   11 0.0251 0.213 0.3, 0.5 -0.05
FVB/NJ f 0.44 0.212   10 0.067 0.482 0.1, 0.9 0.8
FVB/NJ m 0.3 0.184   11 0.0556 0.615 0.1, 0.7 -0.56
NOD.CB17-Prkdcscid/J f 0.31 0.348   10 0.11 1.12 -0.46
NOD.CB17-Prkdcscid/J m 0.45 0.381   10 0.12 0.846 0.28
NOD/ShiLtJ f 0.245 0.276   20 0.0618 1.13 -1.1
NOD/ShiLtJ m 0.357 0.444   21 0.097 1.24 -0.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 0.2938 0.0695 0.4306 0.1569
B6D2F1/J m 0.19 0.0879 0.3631 0.0169
BALB/cByJ f 0.5 0.0607 0.6195 0.3805
BALB/cByJ m 0.5864 0.0593 0.7031 0.4697
C3H/HeJ f 0.47 0.0879 0.6431 0.2969
C3H/HeJ m 0.7545 0.0839 0.9196 0.5895
C57BL/6J f 0.2371 0.047 0.3297 0.1446
C57BL/6J m 0.2067 0.0508 0.3066 0.1067
CBA/J f 0.2864 0.0593 0.4031 0.1697
CBA/J m 0.3696 0.058 0.4837 0.2554
DBA/2J f 0.4364 0.0839 0.6014 0.2713
DBA/2J m 0.3909 0.0839 0.556 0.2259
FVB/NJ f 0.44 0.0879 0.6131 0.2669
FVB/NJ m 0.3 0.0839 0.465 0.135
NOD.CB17-Prkdcscid/J f 0.31 0.0879 0.4831 0.1369
NOD.CB17-Prkdcscid/J m 0.45 0.0879 0.6231 0.2769
NOD/ShiLtJ f 0.245 0.0622 0.3674 0.1226
NOD/ShiLtJ m 0.3571 0.0607 0.4766 0.2377


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 0.2419 0.0561 0.3522 0.1315
BALB/cByJ both 0.5432 0.0424 0.6267 0.4597
C3H/HeJ both 0.6123 0.0608 0.7319 0.4927
C57BL/6J both 0.2219 0.0346 0.29 0.1538
CBA/J both 0.328 0.0415 0.4096 0.2463
DBA/2J both 0.4136 0.0593 0.5303 0.2969
FVB/NJ both 0.37 0.0608 0.4896 0.2504
NOD.CB17-Prkdcscid/J both 0.38 0.0622 0.5024 0.2576
NOD/ShiLtJ both 0.3011 0.0434 0.3866 0.2156




  GWAS USING LINEAR MIXED MODELS