Project measure / variable:   Jaxpheno2   kidney_R16

ID, description, units MPD:22733   kidney_R16   kidney (right) weight   [g]  at age 16wks  
Data set, strains Jaxpheno2   inbred   9 strains     sex: both     age: 16wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Jaxpheno2 - kidney (right) weight at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.147   g 0.224   g
Median of the strain means0.144   g 0.236   g
SD of the strain means± 0.0147 ± 0.0360
Coefficient of variation (CV)0.0997 0.161
Min–max range of strain means0.128   –   0.170   g 0.159   –   0.258   g
Mean sample size per strain7.1   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1943 0.1943 178.2158 < 0.0001
strain 8 0.0761 0.0095 8.7235 < 0.0001
sex:strain 8 0.0246 0.0031 2.8224 0.0066
Residuals 121 0.1319 0.0011


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 0.144 0.00695   4 0.00347 0.0483 0.138, 0.152 -0.2
B6D2F1/J m 0.159 0.124   5 0.0556 0.781 0.0239, 0.272 -1.8
BALB/cByJ f 0.162 0.0098   10 0.0031 0.0604 0.147, 0.181 1.02
BALB/cByJ m 0.252 0.0244   10 0.00771 0.0969 0.202, 0.277 0.78
C3H/HeJ f 0.135 0.00814   5 0.00364 0.0605 0.121, 0.142 -0.82
C3H/HeJ m 0.233 0.0511   5 0.0229 0.22 0.147, 0.269 0.25
C57BL/6J f 0.134 0.0298   15 0.0077 0.223 0.106, 0.233 -0.89
C57BL/6J m 0.174 0.0111   15 0.00286 0.0637 0.156, 0.196 -1.38
CBA/J f 0.143 0.017   10 0.00538 0.119 0.112, 0.166 -0.27
CBA/J m 0.236 0.0227   10 0.00719 0.0965 0.178, 0.258 0.34
DBA/2J f 0.17 0.00642   5 0.00287 0.0377 0.164, 0.18 1.57
DBA/2J m 0.256 0.015   5 0.00669 0.0583 0.231, 0.27 0.89
FVB/NJ f 0.144 0.0103   5 0.00459 0.0713 0.129, 0.156 -0.2
FVB/NJ m 0.239 0.0147   5 0.00656 0.0613 0.219, 0.259 0.42
NOD.CB17-Prkdcscid/J f 0.128 0.0114   5 0.0051 0.0895 0.11, 0.139 -1.3
NOD.CB17-Prkdcscid/J m 0.208 0.0307   5 0.0137 0.148 0.164, 0.247 -0.44
NOD/ShiLtJ f 0.163 0.0325   10 0.0103 0.199 0.133, 0.224 1.09
NOD/ShiLtJ m 0.258 0.0414   10 0.0131 0.161 0.203, 0.346 0.95


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 0.1438 0.0165 0.1764 0.1111
B6D2F1/J m 0.1592 0.0148 0.1884 0.1299
BALB/cByJ f 0.1623 0.0104 0.183 0.1416
BALB/cByJ m 0.2519 0.0104 0.2726 0.2312
C3H/HeJ f 0.1346 0.0148 0.1638 0.1054
C3H/HeJ m 0.2328 0.0148 0.262 0.2036
C57BL/6J f 0.134 0.0085 0.1509 0.1171
C57BL/6J m 0.1735 0.0085 0.1904 0.1567
CBA/J f 0.1429 0.0104 0.1636 0.1222
CBA/J m 0.2357 0.0104 0.2564 0.215
DBA/2J f 0.1702 0.0148 0.1994 0.141
DBA/2J m 0.2564 0.0148 0.2856 0.2272
FVB/NJ f 0.1438 0.0148 0.173 0.1146
FVB/NJ m 0.2392 0.0148 0.2684 0.21
NOD.CB17-Prkdcscid/J f 0.1276 0.0148 0.1568 0.0984
NOD.CB17-Prkdcscid/J m 0.2076 0.0148 0.2368 0.1784
NOD/ShiLtJ f 0.1633 0.0104 0.184 0.1426
NOD/ShiLtJ m 0.2577 0.0104 0.2784 0.237


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 0.1515 0.0111 0.1734 0.1295
BALB/cByJ both 0.2071 0.0074 0.2217 0.1925
C3H/HeJ both 0.1837 0.0104 0.2044 0.163
C57BL/6J both 0.1538 0.006 0.1657 0.1418
CBA/J both 0.1893 0.0074 0.2039 0.1747
DBA/2J both 0.2133 0.0104 0.234 0.1926
FVB/NJ both 0.1915 0.0104 0.2122 0.1708
NOD.CB17-Prkdcscid/J both 0.1676 0.0104 0.1883 0.1469
NOD/ShiLtJ both 0.2105 0.0074 0.2251 0.1959




  GWAS USING LINEAR MIXED MODELS