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Project measure / variable:   Jaxpheno1   lean_wt16

ID, description, units MPD:22413   lean_wt16   lean body tissue mass, head excluded   [g]  at age 16wks  
Data set, strains Jaxpheno1   inbred   9 strains     sex: both     age: 16wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxpheno1 - lean body tissue mass, head excluded at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means17.8   g 22.8   g
Median of the strain means17.7   g 22.7   g
SD of the strain means± 1.17 ± 1.31
Coefficient of variation (CV)0.0656 0.0573
Min–max range of strain means15.9   –   20.1   g 20.9   –   25.5   g
Mean sample size per strain7.1   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 960.4921 960.4921 605.2834 < 0.0001
strain 8 137.9715 17.2464 10.8684 < 0.0001
sex:strain 8 27.8453 3.4807 2.1934 0.0324
Residuals 122 193.5953 1.5868


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 20.1 1.64   5 0.736 0.0818 17.8, 21.9 1.98
B6D2F1/J m 25.5 0.607   5 0.271 0.0238 24.8, 26.4 2.08
BALB/cByJ f 18.4 1.19   10 0.376 0.0645 16.5, 20.5 0.52
BALB/cByJ m 23.2 0.834   10 0.264 0.0359 22.0, 24.8 0.31
C3H/HeJ f 17.0 1.23   5 0.551 0.0725 15.6, 18.6 -0.68
C3H/HeJ m 21.8 1.7   5 0.761 0.0781 19.5, 23.6 -0.76
C57BL/6J f 15.9 0.984   15 0.254 0.0619 14.5, 18.4 -1.62
C57BL/6J m 22.5 1.24   15 0.319 0.0549 20.4, 25.0 -0.22
CBA/J f 17.3 0.985   10 0.311 0.057 15.7, 18.5 -0.42
CBA/J m 21.9 0.807   10 0.255 0.0368 20.8, 23.2 -0.68
DBA/2J f 17.3 1.73   5 0.775 0.1 15.0, 19.2 -0.42
DBA/2J m 20.9 0.464   5 0.207 0.0222 20.3, 21.3 -1.45
FVB/NJ f 17.7 0.39   5 0.174 0.022 17.3, 18.1 -0.08
FVB/NJ m 23.0 0.432   5 0.193 0.0188 22.5, 23.5 0.16
NOD.CB17-Prkdcscid/J f 18.5 0.288   5 0.129 0.0155 18.2, 18.9 0.61
NOD.CB17-Prkdcscid/J m 22.7 0.822   5 0.367 0.0362 21.6, 23.7 -0.07
NOD/ShiLtJ f 17.9 1.69   10 0.535 0.0944 14.9, 20.0 0.1
NOD/ShiLtJ m 23.6 2.41   10 0.761 0.102 18.2, 26.7 0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 20.1 0.5634 21.2152 18.9848
B6D2F1/J m 25.46 0.5634 26.5752 24.3448
BALB/cByJ f 18.42 0.3984 19.2086 17.6314
BALB/cByJ m 23.23 0.3984 24.0186 22.4414
C3H/HeJ f 16.98 0.5634 18.0952 15.8648
C3H/HeJ m 21.78 0.5634 22.8952 20.6648
C57BL/6J f 15.9 0.3253 16.5439 15.2561
C57BL/6J m 22.5133 0.3253 23.1572 21.8695
CBA/J f 17.26 0.3984 18.0486 16.4714
CBA/J m 21.92 0.3984 22.7086 21.1314
DBA/2J f 17.3 0.5634 18.4152 16.1848
DBA/2J m 20.9 0.5634 22.0152 19.7848
FVB/NJ f 17.72 0.5634 18.8352 16.6048
FVB/NJ m 23.02 0.5634 24.1352 21.9048
NOD.CB17-Prkdcscid/J f 18.54 0.5634 19.6552 17.4248
NOD.CB17-Prkdcscid/J m 22.7 0.5634 23.8152 21.5848
NOD/ShiLtJ f 17.91 0.3984 18.6986 17.1214
NOD/ShiLtJ m 23.58 0.3984 24.3686 22.7914


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 22.78 0.3984 23.5686 21.9914
BALB/cByJ both 20.825 0.2817 21.3826 20.2674
C3H/HeJ both 19.38 0.3984 20.1686 18.5914
C57BL/6J both 19.2067 0.23 19.662 18.7514
CBA/J both 19.59 0.2817 20.1476 19.0324
DBA/2J both 19.1 0.3984 19.8886 18.3114
FVB/NJ both 20.37 0.3984 21.1586 19.5814
NOD.CB17-Prkdcscid/J both 20.62 0.3984 21.4086 19.8314
NOD/ShiLtJ both 20.745 0.2817 21.3026 20.1874




  GWAS USING LINEAR MIXED MODELS