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Project measure / variable:   Johnson1   age_yng

ID, description, units MPD:1401   age_yng   age of younger group (local parameter)   [d]  
Data set, strains Johnson1   inbred   42 strains     sex: both
Procedure colony observation
Ontology mappings


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  STRAIN COMPARISON PLOT
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Johnson1 - age of younger group (local parameter)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested26 strains28 strains
Mean of the strain means58.9   d 57.6   d
Median of the strain means61.2   d 60.7   d
SD of the strain means± 13.9 ± 11.5
Coefficient of variation (CV)0.236 0.199
Min–max range of strain means27.0   –   81.0   d 27.0   –   86.0   d
Mean sample size per strain7.2   mice 6.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 70.961 70.961 0.3867 0.5348
strain 11 25492.1246 2317.4659 12.6286 < 0.0001
sex:strain 11 3664.6683 333.1517 1.8154 0.0543
Residuals 179 32848.1673 183.5093


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P1/ReJ f 65.0 13.4   9 4.48 0.207 50.0, 81.0 0.44
129P1/ReJ m 63.0 12.9   8 4.55 0.204 50.0, 81.0 0.47
129P3/J f 63.0 0.0   5 0.0 0.0 63.0, 63.0 0.29
129T2/SvEmsJ f 57.0 0.0   5 0.0 0.0 57.0, 57.0 -0.14
A/HeJ f 74.7 13.8   12 3.98 0.185 56.0, 84.0 1.14
A/J f 73.3 0.488   7 0.184 0.00666 73.0, 74.0 1.04
A/J m 68.6 13.6   19 3.11 0.198 56.0, 84.0 0.96
ALR/LtJ m 64.0 0.0   5 0.0 0.0 64.0, 64.0 0.56
ALS/LtJ m 61.7 1.63   6 0.667 0.0265 61.0, 65.0 0.36
A/WySnJ f 64.6 14.4   12 4.16 0.223 53.0, 84.0 0.41
A/WySnJ m 65.6 14.6   11 4.4 0.222 53.0, 84.0 0.7
BPN/3J m 63.0 26.3   6 10.7 0.417 39.0, 87.0 0.47
BUB/BnJ f 54.8 26.2   11 7.91 0.478 19.0, 82.0 -0.3
BUB/BnJ m 37.9 18.1   7 6.84 0.478 19.0, 57.0 -1.72
C3H/HeOuJ m 67.0 0.0   5 0.0 0.0 67.0, 67.0 0.82
C57BL/6J m 86.0 0.0   5 0.0 0.0 86.0, 86.0 2.48
C57BLKS/J m 63.0 6.71   5 3.0 0.106 60.0, 75.0 0.47
C58/J f 61.0 2.74   5 1.22 0.0449 58.0, 63.0 0.15
CBA/CaJ f 61.7 2.5   9 0.833 0.0405 60.0, 65.0 0.2
CBA/CaJ m 63.0 2.74   5 1.22 0.0435 60.0, 65.0 0.47
CE/J m 72.0 13.9   6 5.69 0.194 54.0, 81.0 1.26
DBA/1J f 81.0 0.0   5 0.0 0.0 81.0, 81.0 1.59
DBA/1J m 52.0 0.0   5 0.0 0.0 52.0, 52.0 -0.49
DBA/1LacJ m 63.0 0.0   5 0.0 0.0 63.0, 63.0 0.47
DBA/2HaSmnJ m 46.0 0.0   5 0.0 0.0 46.0, 46.0 -1.01
DBA/2J f 41.7 22.7   7 8.58 0.544 24.0, 74.0 -1.24
DBA/2J m 49.8 19.1   14 5.11 0.384 24.0, 74.0 -0.68
FVB/NJ f 62.0 0.0   5 0.0 0.0 62.0, 62.0 0.22
I/LnJ f 73.5 9.83   8 3.47 0.134 62.0, 83.0 1.05
JF1/MsJ f 47.2 3.63   9 1.21 0.0769 40.0, 50.0 -0.84
JF1/MsJ m 43.8 3.29   10 1.04 0.0752 40.0, 49.0 -1.2
LG/J m 55.0 0.0   5 0.0 0.0 55.0, 55.0 -0.23
LP/J f 80.0 0.0   7 0.0 0.0 80.0, 80.0 1.52
MA/MyJ f 45.0 0.0   5 0.0 0.0 45.0, 45.0 -1.0
MRL/MpJ m 56.4 6.02   5 2.69 0.107 52.0, 63.0 -0.1
MSM/MsJ f 36.6 2.19   5 0.98 0.0599 35.0, 39.0 -1.6
NOD.NON-H2nb1/LtJ f 27.0 0.0   5 0.0 0.0 27.0, 27.0 -2.3
NOD.NON-H2nb1/LtJ m 27.0 0.0   5 0.0 0.0 27.0, 27.0 -2.67
NOD/ShiLtJ f 43.3 19.0   7 7.18 0.439 23.0, 60.0 -1.12
NOD/ShiLtJ m 46.7 18.3   6 7.49 0.393 23.0, 60.0 -0.95
NON/ShiLtJ f 55.0 0.0   5 0.0 0.0 55.0, 55.0 -0.28
NOR/LtJ f 60.0 0.0   5 0.0 0.0 60.0, 60.0 0.08
PERA/EiJ m 60.4 11.8   8 4.16 0.195 49.0, 74.0 0.25
P/J m 61.0 3.7   8 1.31 0.0607 59.0, 67.0 0.3
PL/J f 77.5 11.1   10 3.5 0.143 67.0, 88.0 1.34
PWK/PhJ f 43.6 3.15   7 1.19 0.0724 39.0, 46.0 -1.1
RIIIS/J m 53.0 0.0   5 0.0 0.0 53.0, 53.0 -0.4
SEC/1ReJ m 53.0 0.0   5 0.0 0.0 53.0, 53.0 -0.4
SENCARA/PtJ f 53.6 3.07   13 0.851 0.0573 52.0, 59.0 -0.38
SENCARA/PtJ m 56.2 3.83   5 1.71 0.0682 52.0, 59.0 -0.12
SJL/J m 49.5 0.548   6 0.224 0.0111 49.0, 50.0 -0.71
SKH2/J f 68.0 0.0   5 0.0 0.0 68.0, 68.0 0.65
WSB/EiJ f 61.4 11.7   7 4.41 0.19 49.0, 73.0 0.18
WSB/EiJ m 64.9 10.9   7 4.13 0.168 49.0, 73.0 0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P1/ReJ f 65.0 4.5155 73.9105 56.0895
129P1/ReJ m 63.0 4.7894 72.451 53.549
A/J f 73.2857 5.1201 83.3893 63.1822
A/J m 68.5789 3.1078 74.7116 62.4463
A/WySnJ f 64.5833 3.9106 72.3001 56.8666
A/WySnJ m 65.6364 4.0844 73.6962 57.5765
BUB/BnJ f 54.8182 4.0844 62.878 46.7583
BUB/BnJ m 37.8571 5.1201 47.9607 27.7536
CBA/CaJ f 61.6667 4.5155 70.5772 52.7562
CBA/CaJ m 63.0 6.0582 74.9547 51.0453
DBA/1J f 81.0 6.0582 92.9547 69.0453
DBA/1J m 52.0 6.0582 63.9547 40.0453
DBA/2J f 41.7143 5.1201 51.8178 31.6107
DBA/2J m 49.7857 3.6205 56.93 42.6414
JF1/MsJ f 47.2222 4.5155 56.1327 38.3117
JF1/MsJ m 43.8 4.2838 52.2532 35.3468
NOD.NON-H2nb1/LtJ f 27.0 6.0582 38.9547 15.0453
NOD.NON-H2nb1/LtJ m 27.0 6.0582 38.9547 15.0453
NOD/ShiLtJ f 43.2857 5.1201 53.3893 33.1822
NOD/ShiLtJ m 46.6667 5.5304 57.5798 35.7536
SENCARA/PtJ f 53.6154 3.7571 61.0294 46.2014
SENCARA/PtJ m 56.2 6.0582 68.1547 44.2453
WSB/EiJ f 61.4286 5.1201 71.5321 51.325
WSB/EiJ m 64.8571 5.1201 74.9607 54.7536


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129P1/ReJ both 64.0 3.2912 70.4946 57.5054
A/J both 70.9323 2.9947 76.8419 65.0228
A/WySnJ both 65.1098 2.8273 70.689 59.5307
BUB/BnJ both 46.3377 3.2748 52.7999 39.8754
CBA/CaJ both 62.3333 3.778 69.7884 54.8783
DBA/1J both 66.5 4.2838 74.9532 58.0468
DBA/2J both 45.75 3.1354 51.9371 39.5629
JF1/MsJ both 45.5111 3.1121 51.6522 39.37
NOD.NON-H2nb1/LtJ both 27.0 4.2838 35.4532 18.5468
NOD/ShiLtJ both 44.9762 3.7683 52.4122 37.5402
SENCARA/PtJ both 54.9077 3.5643 61.9412 47.8742
WSB/EiJ both 63.1429 3.6205 70.2872 55.9986




  GWAS USING LINEAR MIXED MODELS