Project measure / variable:   Project1217   Penh_2

ID, description, units MPD:131851   Penh_2   Penh    T0-T15  
Data set, strains Project1217   other   8 strains     sex: both
Procedure None
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  STRAIN COMPARISON PLOT
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Project1217 - Penh T0-T15



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means6.1645   None 6.1897   None
Median of the strain means4.9119   None 4.7749   None
SD of the strain means± 3.6256 ± 3.3543
Coefficient of variation (CV)0.5881 0.5419
Min–max range of strain means2.6036   –   12.013   None 3.3614   –   13.342   None
Mean sample size per strain7.5   mice 6.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0291 0.0291 0.0038 0.951
strain 6 1134.3894 189.0649 24.6515 < 0.0001
sex:strain 6 77.6297 12.9383 1.687 0.1324
Residuals 96 736.2719 7.6695


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.9 4.3064   9 1.4355 0.3951 0.62894, 15.823 1.31
129S1/SvImJ m 13.342 2.8966   8 1.0241 0.2171 7.4645, 16.466 2.13
A/J f 4.79 1.2065   9 0.40216 0.2519 2.7566, 6.1962 -0.38
A/J m 3.7452 3.5594   5 1.5918 0.9504 0.66824, 9.8728 -0.73
C57BL/6J f 3.6764 0.66118   8 0.23376 0.1798 2.7363, 4.4595 -0.69
C57BL/6J m 4.5735 2.0   8 0.7071 0.4373 2.1954, 8.2635 -0.48
CAST/EiJ f 2.7741 0.74826   2   0.5291 0.2697 2.245, 3.3032 -0.94
CAST/EiJ m 4.3845 0.0   1   0.0 0.0 4.3845, 4.3845 -0.54
NOD/ShiLtJ f 2.6036 0.98534   9 0.32845 0.3785 1.6549, 4.7584 -0.98
NOD/ShiLtJ m 3.3614 3.5975   8 1.2719 1.0702 1.4551, 12.208 -0.84
NZO/HlLtJ f 7.5247 3.9009   8 1.3792 0.5184 1.5684, 12.252 0.38
NZO/HlLtJ m 6.4514 2.7031   8 0.95568 0.419 2.2058, 11.211 0.08
PWK/PhJ f 12.013 3.6507   7 1.3798 0.3039 8.924, 18.82 1.61
PWK/PhJ m 8.6832 3.1727   7 1.1992 0.3654 4.9044, 14.338 0.74
WSB/EiJ f 5.0338 1.3773   8 0.48695 0.2736 2.9362, 7.2674 -0.31
WSB/EiJ m 4.9762 1.9321   8 0.68309 0.3883 2.3095, 8.4007 -0.36


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 12.0131428571 1.0467295214 14.0908845356 9.9354011787
129S1/SvImJ 2 8.6832 1.0467295214 10.7609416784 6.6054583216
A/J 1 10.9002488889 0.9231286679 12.7326448121 9.0678529656
A/J 2 13.3419375 0.9791258114 15.2854868747 11.3983881253
BALB/cJ 1 4.7900111111 0.9231286679 6.6224070344 2.9576151879
BALB/cJ 2 3.745208 1.238507072 6.2036251076 1.2867908924
BTBR T+ Itpr3tf/J 1 7.5247125 0.9791258114 9.4682618747 5.5811631253
BTBR T+ Itpr3tf/J 2 6.4514 0.9791258114 8.3949493747 4.5078506253
C3H/HeJ 1 5.033775 0.9791258114 6.9773243747 3.0902256253
C3H/HeJ 2 4.9762375 0.9791258114 6.9197868747 3.0326881253
C57BL/6J 1 3.6764125 0.9791258114 5.6199618747 1.7328631253
C57BL/6J 2 4.573475 0.9791258114 6.5170243747 2.6299256253
CAST/EiJ 1 2.6036 0.9231286679 4.4359959232 0.7712040768
CAST/EiJ 2 3.3614125 0.9791258114 5.3049618747 1.4178631253


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 10.3481714286 0.7401495427 11.8173566589 8.8789861982
A/J both 12.1210931944 0.6728398569 13.4566697545 10.7855166343
BALB/cJ both 4.2676095556 0.7723448558 5.8007019773 2.7345171338
BTBR T+ Itpr3tf/J both 6.98805625 0.6923465009 8.3623531924 5.6137593076
C3H/HeJ both 5.00500625 0.6923465009 6.3793031924 3.6307093076
C57BL/6J both 4.12494375 0.6923465009 5.4992406924 2.7506468076
CAST/EiJ both 2.98250625 0.6728398569 4.3180828101 1.6469296899




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA