Project measure / variable:   Project1202   CFC.PS4_14_Ntg_HFD

ID, description, units MPD:130466   CFC.PS4_14_Ntg_HFD   CFC.PS4    14 Ntg HFD  
Data set, strains Project1202   F1 AD-BXD   41 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - CFC.PS4 14 Ntg HFD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested41 strains38 strains
Mean of the strain means55.09   None 58.23   None
Median of the strain means53.11   None 57.91   None
SD of the strain means± 13.18 ± 13.845
Coefficient of variation (CV)0.2392 0.2378
Min–max range of strain means22.443   –   85.17   None 28.953   –   85.34   None
Mean sample size per strain5.4   mice 5.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 142.0882 142.0882 0.3225 0.5705
strain 37 36654.4642 990.6612 2.2487 < 0.0001
sex:strain 37 31233.4961 844.1485 1.9161 0.0016
Residuals 341 150226.181 440.546


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 42.668 26.846   5 12.006 0.6292 6.0, 76.0 -0.94
(B6.5XFAD x BXD113)F1 f 85.17 11.741   4 5.8705 0.1379 68.67, 96.0 2.28
(B6.5XFAD x BXD113)F1 m 45.2 28.929   5 12.938 0.64 6.67, 81.33 -0.94
(B6.5XFAD x BXD124)F1 f 59.24 25.323   7 9.5714 0.4275 16.67, 84.67 0.31
(B6.5XFAD x BXD124)F1 m 50.11 25.055   6 10.229 0.5 9.33, 78.67 -0.59
(B6.5XFAD x BXD125)F1 f 69.22 20.937   6 8.5474 0.3025 42.0, 96.67 1.07
(B6.5XFAD x BXD125)F1 m 59.6 20.981   5 9.3828 0.352 30.0, 82.67 0.1
(B6.5XFAD x BXD12)F1 f 50.26 25.443   4 12.722 0.5062 15.33, 72.39 -0.37
(B6.5XFAD x BXD12)F1 m 73.33 22.798   6 9.3074 0.3109 38.0, 99.33 1.09
(B6.5XFAD x BXD14)F1-ADtg f 48.8 14.479   5 6.4752 0.2967 34.0, 69.33 -0.48
(B6.5XFAD x BXD14)F1-ADtg m 70.33 16.23   10 5.1325 0.2308 41.33, 91.33 0.87
(B6.5XFAD x BXD152)F1 f 58.29 29.454   7 11.133 0.5053 14.67, 92.67 0.24
(B6.5XFAD x BXD152)F1 m 63.22 33.513   6 13.682 0.5301 10.67, 95.33 0.36
(B6.5XFAD x BXD154)F1 f 52.86 23.258   7 8.7908 0.44 22.0, 85.33 -0.17
(B6.5XFAD x BXD154)F1 m 35.668 23.375   4 11.688 0.6554 14.67, 67.33 -1.63
(B6.5XFAD x BXD161)F1 f 67.6 6.6591   5 2.978 0.0985 58.67, 74.67 0.95
(B6.5XFAD x BXD161)F1 m 65.33 29.467   5 13.178 0.451 15.33, 86.67 0.51
(B6.5XFAD x BXD169)F1 f 47.222 28.03   6 11.443 0.5936 10.67, 81.33 -0.6
(B6.5XFAD x BXD169)F1 m 54.63 24.485   6 9.9962 0.4482 18.0, 92.67 -0.26
(B6.5XFAD x BXD16)F1-ADtg f 59.33 14.075   6 5.746 0.2372 37.33, 72.67 0.32
(B6.5XFAD x BXD16)F1-ADtg m 48.332 31.062   4 15.531 0.6427 8.0, 80.0 -0.71
(B6.5XFAD x BXD19)F1 f 69.87 14.45   5 6.4623 0.2068 57.33, 94.67 1.12
(B6.5XFAD x BXD19)F1 m 47.239 29.602   7 11.188 0.6266 8.0, 86.67 -0.79
(B6.5XFAD x BXD28)F1 f 51.45 26.319   6 10.745 0.5116 6.67, 74.0 -0.28
(B6.5XFAD x BXD28)F1 m 58.08 12.208   8 4.316 0.2102 43.33, 84.0 -0.01
(B6.5XFAD x BXD31)F1 f 52.67 14.82   5 6.6275 0.2814 36.0, 70.67 -0.18
(B6.5XFAD x BXD31)F1 m 57.73 33.537   5 14.998 0.5809 4.0, 93.33 -0.04
(B6.5XFAD x BXD32)F1-ADtg f 46.668 31.643   4 15.822 0.6781 7.33, 82.0 -0.64
(B6.5XFAD x BXD32)F1-ADtg m 56.0 17.777   4 8.8887 0.3175 36.67, 79.33 -0.16
(B6.5XFAD x BXD34)F1-ADtg f 40.22 33.682   3 19.446 0.8375 13.33, 78.0 -1.13
(B6.5XFAD x BXD34)F1-ADtg m 74.67 7.6917   3 4.4408 0.103 67.33, 82.67 1.19
(B6.5XFAD x BXD38)F1 f 67.33 11.132   6 4.5447 0.1653 56.0, 82.0 0.93
(B6.5XFAD x BXD38)F1 m 53.94 24.826   4 12.413 0.4603 18.67, 76.42 -0.31
(B6.5XFAD x BXD39)F1 f 65.17 11.741   4 5.8705 0.1802 48.67, 76.0 0.76
(B6.5XFAD x BXD39)F1 m 71.47 15.119   5 6.7612 0.2115 50.0, 92.67 0.96
(B6.5XFAD x BXD42)F1-ADtg f 36.167 19.844   8 7.016 0.5487 8.67, 73.33 -1.44
(B6.5XFAD x BXD42)F1-ADtg m 32.168 16.124   4 8.0618 0.5012 14.0, 50.67 -1.88
(B6.5XFAD x BXD48a)F1 f 44.0 0.94752   2   0.67 0.0215 43.33, 44.67 -0.84
(B6.5XFAD x BXD48a)F1 m 82.4 13.113   5 5.8645 0.1591 61.33, 96.67 1.75
(B6.5XFAD x BXD49)F1 f 71.34 16.753   4 8.3764 0.2348 56.0, 88.67 1.23
(B6.5XFAD x BXD49)F1 m 49.11 27.343   3 15.786 0.5568 18.0, 69.33 -0.66
(B6.5XFAD x BXD50)F1 f 54.89 23.156   6 9.4533 0.4219 21.33, 80.67 -0.02
(B6.5XFAD x BXD50)F1 m 43.668 19.503   8 6.8954 0.4466 20.0, 69.33 -1.05
(B6.5XFAD x BXD55)F1-ADtg f 38.251 24.616   8 8.7032 0.6435 2.67, 70.0 -1.28
(B6.5XFAD x BXD55)F1-ADtg m 28.953 17.706   7 6.6922 0.6115 6.67, 58.67 -2.11
(B6.5XFAD x BXD60)F1-ADtg f 53.11 19.829   6 8.0952 0.3733 18.0, 72.0 -0.15
(B6.5XFAD x BXD60)F1-ADtg m 73.34 15.023   6 6.1333 0.2049 58.67, 93.33 1.09
(B6.5XFAD x BXD61)F1-ADtg f 54.86 27.354   7 10.339 0.4986 18.0, 85.33 -0.02
(B6.5XFAD x BXD61)F1-ADtg m 80.0 12.402   4 6.201 0.155 65.33, 94.0 1.57
(B6.5XFAD x BXD62)F1-ADtg f 75.05 9.59   7 3.6247 0.1278 58.0, 87.33 1.51
(B6.5XFAD x BXD62)F1-ADtg m 54.29 21.807   7 8.2424 0.4017 24.0, 88.67 -0.28
(B6.5XFAD x BXD65)F1-ADtg f 55.67 33.882   4 16.941 0.6087 6.0, 80.0 0.04
(B6.5XFAD x BXD65)F1-ADtg m 67.73 9.016   5 4.0321 0.1331 58.0, 76.67 0.69
(B6.5XFAD x BXD66)F1-ADtg f 74.13 16.843   5 7.5323 0.2272 53.33, 94.0 1.44
(B6.5XFAD x BXD66)F1-ADtg m 59.07 17.66   5 7.8979 0.299 36.0, 73.33 0.06
(B6.5XFAD x BXD68)F1-ADtg f 60.95 13.688   7 5.1737 0.2246 42.0, 76.0 0.44
(B6.5XFAD x BXD68)F1-ADtg m 64.4 7.4609   5 3.3366 0.1159 52.67, 72.0 0.45
(B6.5XFAD x BXD73)F1 f 41.704 22.71   9 7.57 0.5445 7.33, 74.67 -1.02
(B6.5XFAD x BXD73)F1 m 35.22 11.342   6 4.6302 0.322 17.33, 47.33 -1.66
(B6.5XFAD x BXD74)F1 f 73.33 12.719   3 7.3435 0.1734 65.33, 88.0 1.38
(B6.5XFAD x BXD74)F1 m 64.33 17.453   8 6.1707 0.2713 28.0, 81.33 0.44
(B6.5XFAD x BXD75)F1-ADtg f 49.832 33.167   4 16.584 0.6656 17.33, 84.67 -0.4
(B6.5XFAD x BXD75)F1-ADtg m 51.47 21.979   5 9.8293 0.4271 27.33, 82.67 -0.49
(B6.5XFAD x BXD77)F1-ADtg f 45.0 12.324   4 6.1621 0.2739 32.0, 58.0 -0.77
(B6.5XFAD x BXD77)F1-ADtg m 44.333 31.477   6 12.85 0.71 4.0, 78.0 -1.0
(B6.5XFAD x BXD78)F1 f 22.443 15.641   3 9.0305 0.6969 5.33, 36.0 -2.48
(B6.5XFAD x BXD78)F1 m 85.34 6.5973   2   4.665 0.0773 80.67, 90.0 1.96
(B6.5XFAD x BXD83)F1 f 72.48 12.377   11 3.7319 0.1708 49.33, 85.33 1.32
(B6.5XFAD x BXD83)F1 m 55.87 9.747   5 4.359 0.1745 39.33, 64.0 -0.17
(B6.5XFAD x BXD87)F1-ADtg f 66.4 24.991   5 11.176 0.3764 28.67, 94.67 0.86
(B6.5XFAD x BXD87)F1-ADtg m 54.44 14.915   6 6.0892 0.274 40.67, 77.33 -0.27
(B6.5XFAD x BXD89)F1-ADtg f 39.335 32.053   2   22.665 0.8149 16.67, 62.0 -1.2
(B6.5XFAD x BXD99)F1-ADtg f 42.555 20.275   6 8.2773 0.4764 16.67, 74.0 -0.95
(B6.5XFAD x BXD99)F1-ADtg m 76.5 9.7412   4 4.8706 0.1273 64.67, 87.33 1.32
(B6.5XFAD x D2)F1-ADtg f 44.335 33.467   2   23.665 0.7549 20.67, 68.0 -0.82
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 47.732 18.359   5 8.2103 0.3846 25.33, 73.33 -0.56
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 63.22 24.669   6 10.071 0.3902 16.67, 84.67 0.36
C57BL/6J f 61.05 20.83   7 7.8728 0.3412 35.33, 83.33 0.45
C57BL/6J m 61.89 15.883   6 6.4843 0.2566 38.67, 74.0 0.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 46.6675 10.4945936711 67.3097899056 26.0252100944
129S1/SvImJ 2 56.0 10.4945936711 76.6422899056 35.3577100944
A/J 1 40.22 12.1181129621 64.0556632674 16.3843367326
A/J 2 74.6666666667 12.1181129621 98.5023299341 50.8310033993
AKR/J 1 66.4 9.3866499379 84.8630253761 47.9369746239
AKR/J 2 54.4433333333 8.5687998507 71.2976924638 37.5889742029
ALR/LtJ 1 69.2233333333 8.5687998507 86.0776924638 52.3689742029
ALR/LtJ 2 59.602 9.3866499379 78.0650253761 41.1389746239
ALS/LtJ 1 54.8866666667 8.5687998507 71.7410257971 38.0323075362
ALS/LtJ 2 43.6675 7.4207983506 58.2638031715 29.0711968285
BALB/cJ 1 36.1675 7.4207983506 50.7638031715 21.5711968285
BALB/cJ 2 32.1675 10.4945936711 52.8097899056 11.5252100944
BPH/2J 1 58.2871428571 7.9331671327 73.8912473089 42.6830384054
BPH/2J 2 63.2233333333 8.5687998507 80.0776924638 46.3689742029
BPL/1J 1 47.732 9.3866499379 66.1950253761 29.2689746239
BPL/1J 2 63.2233333333 8.5687998507 80.0776924638 46.3689742029
BPN/3J 1 69.868 9.3866499379 88.3310253761 51.4049746239
BPN/3J 2 47.2385714286 7.9331671327 62.8426758803 31.6344669768
BTBR T+ Itpr3tf/J 1 48.8 9.3866499379 67.2630253761 30.3369746239
BTBR T+ Itpr3tf/J 2 70.333 6.6373638237 83.3883304446 57.2776695554
BUB/BnJ 1 52.8571428571 7.9331671327 68.4612473089 37.2530384054
BUB/BnJ 2 35.6675 10.4945936711 56.3097899056 15.0252100944
C3H/HeJ 1 38.25125 7.4207983506 52.8475531715 23.6549468285
C3H/HeJ 2 28.9528571429 7.9331671327 44.5569615946 13.3487526911
C57BL/10J 1 61.0471428571 7.9331671327 76.6512473089 45.4430384054
C57BL/10J 2 61.89 8.5687998507 78.7443591305 45.0356408695
C57BL/6J 1 53.1116666667 8.5687998507 69.9660257971 36.2573075362
C57BL/6J 2 73.335 8.5687998507 90.1893591305 56.4806408695
C57BLKS/J 1 73.3333333333 12.1181129621 97.1689966007 49.4976700659
C57BLKS/J 2 64.3325 7.4207983506 78.9288031715 49.7361968285
C57BR/cdJ 1 44.0 14.8415967012 73.192606343 14.807393657
C57BR/cdJ 2 82.4 9.3866499379 100.8630253761 63.9369746239
C57L/J 1 72.4836363636 6.3284780971 84.9314055328 60.0358671944
C57L/J 2 55.866 9.3866499379 74.3290253761 37.4029746239
C58/J 1 51.445 8.5687998507 68.2993591305 34.5906408695
C58/J 2 58.0825 7.4207983506 72.6788031715 43.4861968285
CAST/EiJ 1 59.3316666667 8.5687998507 76.1860257971 42.4773075362
CAST/EiJ 2 48.3325 10.4945936711 68.9747899056 27.6902100944
CBA/J 1 42.555 8.5687998507 59.4093591305 25.7006408695
CBA/J 2 76.5 10.4945936711 97.1422899056 55.8577100944
CE/J 1 67.602 9.3866499379 86.0650253761 49.1389746239
CE/J 2 65.332 9.3866499379 83.7950253761 46.8689746239
DBA/2J 1 54.8571428571 7.9331671327 70.4612473089 39.2530384054
DBA/2J 2 79.9975 10.4945936711 100.6397899056 59.3552100944
FVB/NJ 1 75.0471428571 7.9331671327 90.6512473089 59.4430384054
FVB/NJ 2 54.2857142857 7.9331671327 69.8898187375 38.681609834
I/LnJ 1 67.3333333333 8.5687998507 84.1876924638 50.4789742029
I/LnJ 2 53.9375 10.4945936711 74.5797899056 33.2952100944
KK/HlJ 1 50.2625 10.4945936711 70.9047899056 29.6202100944
KK/HlJ 2 73.3333333333 8.5687998507 90.1876924638 56.4789742029
LP/J 1 55.6675 10.4945936711 76.3097899056 35.0252100944
LP/J 2 67.734 9.3866499379 86.1970253761 49.2709746239
MA/MyJ 1 59.2385714286 7.9331671327 74.8426758803 43.6344669768
MA/MyJ 2 50.1116666667 8.5687998507 66.9660257971 33.2573075362
NOD/ShiLtJ 1 49.8325 10.4945936711 70.4747899056 29.1902100944
NOD/ShiLtJ 2 51.466 9.3866499379 69.9290253761 33.0029746239
NON/ShiLtJ 1 41.7044444444 6.9963957807 55.4659710482 27.9429178407
NON/ShiLtJ 2 35.22 8.5687998507 52.0743591305 18.3656408695
NZB/BlNJ 1 74.134 9.3866499379 92.5970253761 55.6709746239
NZB/BlNJ 2 59.066 9.3866499379 77.5290253761 40.6029746239
NZW/LacJ 1 22.4433333333 12.1181129621 46.2789966007 -1.3923299341
NZW/LacJ 2 85.335 14.8415967012 114.527606343 56.142393657
PL/J 1 45.0 10.4945936711 65.6422899056 24.3577100944
PL/J 2 44.3333333333 8.5687998507 61.1876924638 27.4789742029
RBF/DnJ 1 71.335 10.4945936711 91.9772899056 50.6927100944
RBF/DnJ 2 49.11 12.1181129621 72.9456632674 25.2743367326
RIIIS/J 1 47.2216666667 8.5687998507 64.0760257971 30.3673075362
RIIIS/J 2 54.63 8.5687998507 71.4843591305 37.7756408695
SEA/GnJ 1 52.668 9.3866499379 71.1310253761 34.2049746239
SEA/GnJ 2 57.732 9.3866499379 76.1950253761 39.2689746239
SJL/J 1 85.1675 10.4945936711 105.8097899056 64.5252100944
SJL/J 2 45.2 9.3866499379 63.6630253761 26.7369746239
SM/J 1 65.1675 10.4945936711 85.8097899056 44.5252100944
SM/J 2 71.468 9.3866499379 89.9310253761 53.0049746239
SWR/J 1 60.9528571429 7.9331671327 76.5569615946 45.3487526911
SWR/J 2 64.4 9.3866499379 82.8630253761 45.9369746239


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 51.33375 7.4207983506 65.9300531715 36.7374468285
A/J both 57.4433333333 8.5687998507 74.2976924638 40.5889742029
AKR/J both 60.4216666667 6.3547920489 72.9211939351 47.9221393982
ALR/LtJ both 64.4126666667 6.3547920489 76.9121939351 51.9131393982
ALS/LtJ both 49.2770833333 5.6677283598 60.425194025 38.1289726417
BALB/cJ both 34.1675 6.426599888 46.8082693478 21.5267306522
BPH/2J both 60.7552380952 5.838652919 72.2395480162 49.2709281743
BPL/1J both 55.4776666667 6.3547920489 67.9771939351 42.9781393982
BPN/3J both 58.5532857143 6.1450048375 70.6401730491 46.4663983795
BTBR T+ Itpr3tf/J both 59.5665 5.7481256855 70.8727478199 48.2602521801
BUB/BnJ both 44.2623214286 6.5778346946 57.2005613426 31.3240815146
C3H/HeJ both 33.6020535714 5.4314682388 44.2854535688 22.9186535741
C57BL/10J both 61.4685714286 5.838652919 72.9528813495 49.9842615076
C57BL/6J both 63.2233333333 6.059056481 75.141164967 51.3055016996
C57BLKS/J both 68.8329166667 7.1048735021 82.8078129961 54.8580203373
C57BR/cdJ both 63.2 8.7804070193 80.4705788202 45.9294211798
C57L/J both 64.1748181818 5.6603628877 75.308441394 53.0411949696
C58/J both 54.76375 5.6677283598 65.9118606916 43.6156393084
CAST/EiJ both 53.8320833333 6.7742310856 67.156624172 40.5075424947
CBA/J both 59.5275 6.7742310856 72.8520408387 46.2029591613
CE/J both 66.467 6.6373638237 79.5223304446 53.4116695554
DBA/2J both 67.4273214286 6.5778346946 80.3655613426 54.4890815146
FVB/NJ both 64.6664285714 5.6095962758 75.7001966436 53.6326604992
I/LnJ both 60.6354166667 6.7742310856 73.9599575053 47.310875828
KK/HlJ both 61.7979166667 6.7742310856 75.1224575053 48.473375828
LP/J both 61.70075 7.0399874534 75.5480190321 47.8534809679
MA/MyJ both 54.6751190476 5.838652919 66.1594289685 43.1908091267
NOD/ShiLtJ both 50.64925 7.0399874534 64.4965190321 36.8019809679
NON/ShiLtJ both 38.4622222222 5.5311365198 49.3416642594 27.582780185
NZB/BlNJ both 66.6 6.6373638237 79.6553304446 53.5446695554
NZW/LacJ both 53.8891666667 9.5802094758 72.7329130331 35.0454203002
PL/J both 44.6666666667 6.7742310856 57.9912075053 31.342125828
RBF/DnJ both 60.2225 8.0153783143 75.9883093349 44.4566906651
RIIIS/J both 50.9258333333 6.059056481 62.843664967 39.0080016996
SEA/GnJ both 55.2 6.6373638237 68.2553304446 42.1446695554
SJL/J both 65.18375 7.0399874534 79.0310190321 51.3364809679
SM/J both 68.31775 7.0399874534 82.1650190321 54.4704809679
SWR/J both 62.6764285714 6.1450048375 74.7633159063 50.5895412366




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA