Project measure / variable:   Project1202   CFC.Baseline_14_Ntg_HFD

ID, description, units MPD:130402   CFC.Baseline_14_Ntg_HFD   CFC.Baseline    14 Ntg HFD  
Data set, strains Project1202   F1 AD-BXD   41 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - CFC.Baseline 14 Ntg HFD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested41 strains38 strains
Mean of the strain means3.0213   None 3.201   None
Median of the strain means2.22   None 3.3   None
SD of the strain means± 2.4611 ± 1.8853
Coefficient of variation (CV)0.8146 0.589
Min–max range of strain means0.0   –   11.055   None 0.4   –   8.5533   None
Mean sample size per strain5.4   mice 5.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.159 4.159 0.2224 0.6375
strain 37 1264.0594 34.1638 1.8267 0.0032
sex:strain 37 669.7129 18.1003 0.9678 0.5267
Residuals 341 6377.3928 18.702


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 2.026 1.6152   5 0.72232 0.7972 -0.4
(B6.5XFAD x BXD113)F1 f 11.055 8.2053   4 4.1027 0.7422 2.13, 22.02 3.26
(B6.5XFAD x BXD113)F1 m 5.256 7.028   5 3.143 1.3371 1.09
(B6.5XFAD x BXD124)F1 f 4.5171 6.6639   7 2.5187 1.4753 0.61
(B6.5XFAD x BXD124)F1 m 0.97667 0.95236   6 0.3888 0.9751 -1.18
(B6.5XFAD x BXD125)F1 f 3.9067 4.1619   6 1.6991 1.0653 0.36
(B6.5XFAD x BXD125)F1 m 2.342 1.3596   5 0.60805 0.5805 -0.46
(B6.5XFAD x BXD12)F1 f 0.5325 1.065   4 0.5325 2.0 -1.01
(B6.5XFAD x BXD12)F1 m 2.1617 2.7756   6 1.1332 1.284 -0.55
(B6.5XFAD x BXD14)F1-ADtg f 0.924 0.59433   5 0.26579 0.6432 -0.85
(B6.5XFAD x BXD14)F1-ADtg m 0.551 1.0858   10 0.34336 1.9706 -1.41
(B6.5XFAD x BXD152)F1 f 5.1 5.2106   7 1.9694 1.0217 0.84
(B6.5XFAD x BXD152)F1 m 3.08 3.5959   6 1.468 1.1675 -0.06
(B6.5XFAD x BXD154)F1 f 1.9786 2.5703   7 0.97147 1.2991 -0.42
(B6.5XFAD x BXD154)F1 m 1.3775 1.3489   4 0.67444 0.9792 -0.97
(B6.5XFAD x BXD161)F1 f 0.214 0.47852   5 0.214 2.2361 -1.14
(B6.5XFAD x BXD161)F1 m 4.368 7.4283   5 3.322 1.7006 0.62
(B6.5XFAD x BXD169)F1 f 1.835 2.5646   6 1.047 1.3976 -0.48
(B6.5XFAD x BXD169)F1 m 4.3217 6.9301   6 2.8292 1.6036 0.59
(B6.5XFAD x BXD16)F1-ADtg f 3.995 3.3412   6 1.364 0.8363 1.42, 9.59 0.4
(B6.5XFAD x BXD16)F1-ADtg m 3.5525 3.2846   4 1.6423 0.9246 0.19
(B6.5XFAD x BXD19)F1 f 0.534 0.50382   5 0.22531 0.9435 -1.01
(B6.5XFAD x BXD19)F1 m 0.45714 0.88179   7 0.33329 1.9289 -1.46
(B6.5XFAD x BXD28)F1 f 8.495 9.3744   6 3.8271 1.1035 2.22
(B6.5XFAD x BXD28)F1 m 3.5075 3.0232   8 1.0689 0.8619 0.71, 7.82 0.16
(B6.5XFAD x BXD31)F1 f 1.172 2.6207   5 1.172 2.2361 -0.75
(B6.5XFAD x BXD31)F1 m 5.684 10.573   5 4.7283 1.8601 1.32
(B6.5XFAD x BXD32)F1-ADtg f 3.5525 4.5533   4 2.2767 1.2817 0.22
(B6.5XFAD x BXD32)F1-ADtg m 3.33 2.4927   4 1.2464 0.7486 0.07
(B6.5XFAD x BXD34)F1-ADtg f 1.7767 3.0773   3 1.7767 1.7321 -0.51
(B6.5XFAD x BXD34)F1-ADtg m 1.7167 2.385   3 1.377 1.3893 -0.79
(B6.5XFAD x BXD38)F1 f 5.8317 4.8937   6 1.9978 0.8392 1.14
(B6.5XFAD x BXD38)F1 m 4.0375 5.0428   4 2.5214 1.249 0.44
(B6.5XFAD x BXD39)F1 f 8.3925 12.388   4 6.1938 1.476 0.71, 26.82 2.18
(B6.5XFAD x BXD39)F1 m 6.748 7.3994   5 3.3091 1.0965 1.88
(B6.5XFAD x BXD42)F1-ADtg f 0.4 1.1314   8 0.4 2.8284 -1.07
(B6.5XFAD x BXD42)F1-ADtg m 0.4 0.46769   4 0.23384 1.1692 -1.49
(B6.5XFAD x BXD48a)F1 f 4.885 2.6375   2   1.865 0.5399 3.02, 6.75 0.76
(B6.5XFAD x BXD48a)F1 m 1.42 1.6651   5 0.74465 1.1726 -0.94
(B6.5XFAD x BXD49)F1 f 0.0 0.0   4 0.0 None -1.23
(B6.5XFAD x BXD49)F1 m 1.2433 2.1535   3 1.2433 1.7321 -1.04
(B6.5XFAD x BXD50)F1 f 1.0383 2.2139   6 0.9038 2.1321 -0.81
(B6.5XFAD x BXD50)F1 m 3.8412 3.3713   8 1.1919 0.8777 0.34
(B6.5XFAD x BXD55)F1-ADtg f 1.9312 3.1889   8 1.1275 1.6512 -0.44
(B6.5XFAD x BXD55)F1-ADtg m 3.3757 5.9957   7 2.2662 1.7761 0.09
(B6.5XFAD x BXD60)F1-ADtg f 5.8917 4.4771   6 1.8278 0.7599 2.49, 11.9 1.17
(B6.5XFAD x BXD60)F1-ADtg m 2.37 2.6921   6 1.099 1.1359 -0.44
(B6.5XFAD x BXD61)F1-ADtg f 6.0643 4.17   7 1.5761 0.6876 1.24, 12.08 1.24
(B6.5XFAD x BXD61)F1-ADtg m 5.1075 3.0061   4 1.503 0.5886 1.42, 7.82 1.01
(B6.5XFAD x BXD62)F1-ADtg f 1.7514 1.5631   7 0.5908 0.8925 -0.52
(B6.5XFAD x BXD62)F1-ADtg m 4.1114 3.8866   7 1.469 0.9453 0.48
(B6.5XFAD x BXD65)F1-ADtg f 2.31 2.7259   4 1.3629 1.18 -0.29
(B6.5XFAD x BXD65)F1-ADtg m 3.27 3.4405   5 1.5387 1.0522 0.04
(B6.5XFAD x BXD66)F1-ADtg f 1.812 1.8891   5 0.84485 1.0426 0.71, 5.15 -0.49
(B6.5XFAD x BXD66)F1-ADtg m 5.08 3.6741   5 1.6431 0.7233 0.71, 10.83 1.0
(B6.5XFAD x BXD68)F1-ADtg f 0.20286 0.53671   7 0.20286 2.6458 -1.15
(B6.5XFAD x BXD68)F1-ADtg m 1.456 1.4502   5 0.64853 0.996 -0.93
(B6.5XFAD x BXD73)F1 f 3.6511 4.2167   9 1.4056 1.1549 0.26
(B6.5XFAD x BXD73)F1 m 0.83 0.91159   6 0.37216 1.0983 -1.26
(B6.5XFAD x BXD74)F1 f 3.9667 3.8001   3 2.194 0.958 1.6, 8.35 0.38
(B6.5XFAD x BXD74)F1 m 4.9963 10.736   8 3.7959 2.1489 0.95
(B6.5XFAD x BXD75)F1-ADtg f 1.555 1.4321   4 0.71604 0.9209 -0.6
(B6.5XFAD x BXD75)F1-ADtg m 2.168 1.2782   5 0.57162 0.5896 0.71, 4.09 -0.55
(B6.5XFAD x BXD77)F1-ADtg f 1.5975 1.4711   4 0.73553 0.9209 -0.58
(B6.5XFAD x BXD77)F1-ADtg m 5.3883 6.3196   6 2.58 1.1728 1.16
(B6.5XFAD x BXD78)F1 f 3.0767 3.7685   3 2.1757 1.2249 0.02
(B6.5XFAD x BXD78)F1 m 1.865 2.6375   2   1.865 1.4142 -0.71
(B6.5XFAD x BXD83)F1 f 2.3736 2.2541   11 0.67965 0.9497 -0.26
(B6.5XFAD x BXD83)F1 m 3.8 3.2204   5 1.4402 0.8475 0.89, 7.99 0.32
(B6.5XFAD x BXD87)F1-ADtg f 4.94 3.4701   5 1.5519 0.7024 1.07, 9.95 0.78
(B6.5XFAD x BXD87)F1-ADtg m 4.5867 4.4814   6 1.8295 0.977 0.73
(B6.5XFAD x BXD89)F1-ADtg f 2.22 2.1355   2   1.51 0.9619 0.71, 3.73 -0.33
(B6.5XFAD x BXD99)F1-ADtg f 1.3333 1.1766   6 0.48036 0.8825 -0.69
(B6.5XFAD x BXD99)F1-ADtg m 1.2875 1.0488   4 0.52441 0.8146 -1.01
(B6.5XFAD x D2)F1-ADtg f 1.6 2.2627   2   1.6 1.4142 -0.58
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 2.238 1.6353   5 0.73133 0.7307 -0.32
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 3.0217 3.0801   6 1.2574 1.0193 -0.1
C57BL/6J f 3.1971 1.8348   7 0.6935 0.5739 0.71, 5.33 0.07
C57BL/6J m 8.5533 6.6071   6 2.6974 0.7725 2.84


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 3.5525 2.1622922841 7.8056102765 -0.7006102765
129S1/SvImJ 2 3.33 2.1622922841 7.5831102765 -0.9231102765
A/J 1 1.7766666667 2.4968000646 6.6877353927 -3.1344020594
A/J 2 1.7166666667 2.4968000646 6.6277353927 -3.1944020594
AKR/J 1 4.94 1.9340130138 8.7440974776 1.1359025224
AKR/J 2 4.5866666667 1.765504257 8.0593166657 1.1140166676
ALR/LtJ 1 3.9066666667 1.765504257 7.3793166657 0.4340166676
ALR/LtJ 2 2.342 1.9340130138 6.1460974776 -1.4620974776
ALS/LtJ 1 1.0383333333 1.765504257 4.5109833324 -2.4343166657
ALS/LtJ 2 3.84125 1.528971537 6.8486531176 0.8338468824
BALB/cJ 1 0.4 1.528971537 3.4074031176 -2.6074031176
BALB/cJ 2 0.4 2.1622922841 4.6531102765 -3.8531102765
BPH/2J 1 5.1 1.6345393273 8.3150491686 1.8849508314
BPH/2J 2 3.08 1.765504257 6.5526499991 -0.3926499991
BPL/1J 1 2.238 1.9340130138 6.0420974776 -1.5660974776
BPL/1J 2 3.0216666667 1.765504257 6.4943166657 -0.4509833324
BPN/3J 1 0.534 1.9340130138 4.3380974776 -3.2700974776
BPN/3J 2 0.4571428571 1.6345393273 3.6721920257 -2.7579063115
BTBR T+ Itpr3tf/J 1 0.924 1.9340130138 4.7280974776 -2.8800974776
BTBR T+ Itpr3tf/J 2 0.551 1.367553717 3.2409031227 -2.1389031227
BUB/BnJ 1 1.9785714286 1.6345393273 5.1936205972 -1.23647774
BUB/BnJ 2 1.3775 2.1622922841 5.6306102765 -2.8756102765
C3H/HeJ 1 1.93125 1.528971537 4.9386531176 -1.0761531176
C3H/HeJ 2 3.3757142857 1.6345393273 6.5907634543 0.1606651171
C57BL/10J 1 3.1971428571 1.6345393273 6.4121920257 -0.0179063115
C57BL/10J 2 8.5533333333 1.765504257 12.0259833324 5.0806833343
C57BL/6J 1 5.8916666667 1.765504257 9.3643166657 2.4190166676
C57BL/6J 2 2.37 1.765504257 5.8426499991 -1.1026499991
C57BLKS/J 1 3.9666666667 2.4968000646 8.8777353927 -0.9444020594
C57BLKS/J 2 4.99625 1.528971537 8.0036531176 1.9888468824
C57BR/cdJ 1 4.885 3.057943074 10.8998062353 -1.1298062353
C57BR/cdJ 2 1.42 1.9340130138 5.2240974776 -2.3840974776
C57L/J 1 2.3736363636 1.3039113079 4.9383583598 -0.1910856326
C57L/J 2 3.8 1.9340130138 7.6040974776 -0.0040974776
C58/J 1 8.495 1.765504257 11.9676499991 5.0223500009
C58/J 2 3.5075 1.528971537 6.5149031176 0.5000968824
CAST/EiJ 1 3.995 1.765504257 7.4676499991 0.5223500009
CAST/EiJ 2 3.5525 2.1622922841 7.8056102765 -0.7006102765
CBA/J 1 1.3333333333 1.765504257 4.8059833324 -2.1393166657
CBA/J 2 1.2875 2.1622922841 5.5406102765 -2.9656102765
CE/J 1 0.214 1.9340130138 4.0180974776 -3.5900974776
CE/J 2 4.368 1.9340130138 8.1720974776 0.5639025224
DBA/2J 1 6.0642857143 1.6345393273 9.2793348829 2.8492365457
DBA/2J 2 5.1075 2.1622922841 9.3606102765 0.8543897235
FVB/NJ 1 1.7514285714 1.6345393273 4.96647774 -1.4636205972
FVB/NJ 2 4.1114285714 1.6345393273 7.32647774 0.8963794028
I/LnJ 1 5.8316666667 1.765504257 9.3043166657 2.3590166676
I/LnJ 2 4.0375 2.1622922841 8.2906102765 -0.2156102765
KK/HlJ 1 0.5325 2.1622922841 4.7856102765 -3.7206102765
KK/HlJ 2 2.1616666667 1.765504257 5.6343166657 -1.3109833324
LP/J 1 2.31 2.1622922841 6.5631102765 -1.9431102765
LP/J 2 3.27 1.9340130138 7.0740974776 -0.5340974776
MA/MyJ 1 4.5171428571 1.6345393273 7.7321920257 1.3020936885
MA/MyJ 2 0.9766666667 1.765504257 4.4493166657 -2.4959833324
NOD/ShiLtJ 1 1.555 2.1622922841 5.8081102765 -2.6981102765
NOD/ShiLtJ 2 2.168 1.9340130138 5.9720974776 -1.6360974776
NON/ShiLtJ 1 3.6511111111 1.4415281894 6.4865179621 0.8157042601
NON/ShiLtJ 2 0.83 1.765504257 4.3026499991 -2.6426499991
NZB/BlNJ 1 1.812 1.9340130138 5.6160974776 -1.9920974776
NZB/BlNJ 2 5.08 1.9340130138 8.8840974776 1.2759025224
NZW/LacJ 1 3.0766666667 2.4968000646 7.9877353927 -1.8344020594
NZW/LacJ 2 1.865 3.057943074 7.8798062353 -4.1498062353
PL/J 1 1.5975 2.1622922841 5.8506102765 -2.6556102765
PL/J 2 5.3883333333 1.765504257 8.8609833324 1.9156833343
RBF/DnJ 1 0.0 2.1622922841 4.2531102765 -4.2531102765
RBF/DnJ 2 1.2433333333 2.4968000646 6.1544020594 -3.6677353927
RIIIS/J 1 1.835 1.765504257 5.3076499991 -1.6376499991
RIIIS/J 2 4.3216666667 1.765504257 7.7943166657 0.8490166676
SEA/GnJ 1 1.172 1.9340130138 4.9760974776 -2.6320974776
SEA/GnJ 2 5.684 1.9340130138 9.4880974776 1.8799025224
SJL/J 1 11.055 2.1622922841 15.3081102765 6.8018897235
SJL/J 2 5.256 1.9340130138 9.0600974776 1.4519025224
SM/J 1 8.3925 2.1622922841 12.6456102765 4.1393897235
SM/J 2 6.748 1.9340130138 10.5520974776 2.9439025224
SWR/J 1 0.2028571429 1.6345393273 3.4179063115 -3.0121920257
SWR/J 2 1.456 1.9340130138 5.2600974776 -2.3480974776


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.44125 1.528971537 6.4486531176 0.4338468824
A/J both 1.7466666667 1.765504257 5.2193166657 -1.7259833324
AKR/J both 4.7633333333 1.3093329999 7.3387195003 2.1879471664
ALR/LtJ both 3.1243333333 1.3093329999 5.6997195003 0.5489471664
ALS/LtJ both 2.4397916667 1.1677713006 4.7367337386 0.1428495947
BALB/cJ both 0.4 1.3241281927 3.0044874993 -2.2044874993
BPH/2J both 4.09 1.2029883721 6.4562121192 1.7237878808
BPL/1J both 2.6298333333 1.3093329999 5.2052195003 0.0544471664
BPN/3J both 0.4955714286 1.2661087187 2.985937806 -1.9947949489
BTBR T+ Itpr3tf/J both 0.7375 1.1843362599 3.067024438 -1.592024438
BUB/BnJ both 1.6780357143 1.3552884135 4.343813658 -0.9877422294
C3H/HeJ both 2.6534821429 1.1190925759 4.8546758343 0.4522884514
C57BL/10J both 5.8752380952 1.2029883721 8.2414502144 3.509025976
C57BL/6J both 4.1308333333 1.2484000323 6.5863676964 1.6752989703
C57BLKS/J both 4.4814583333 1.4638787965 7.3608276021 1.6020890646
C57BR/cdJ both 3.1525 1.8091035198 6.7109073568 -0.4059073568
C57L/J both 3.0868181818 1.1662537285 5.3807752726 0.7928610911
C58/J both 6.00125 1.1677713006 8.298192072 3.704307928
CAST/EiJ both 3.77375 1.3957536677 6.5191208784 1.0283791216
CBA/J both 1.3104166667 1.3957536677 4.0557875451 -1.4349542117
CE/J both 2.291 1.367553717 4.9809031227 -0.3989031227
DBA/2J both 5.5858928571 1.3552884135 8.2516708008 2.9201149134
FVB/NJ both 2.9314285714 1.1557938425 5.2048116404 0.6580455025
I/LnJ both 4.9345833333 1.3957536677 7.6799542117 2.1892124549
KK/HlJ both 1.3470833333 1.3957536677 4.0924542117 -1.3982875451
LP/J both 2.79 1.4505097604 5.6430731082 -0.0630731082
MA/MyJ both 2.7469047619 1.2029883721 5.1131168811 0.3806926427
NOD/ShiLtJ both 1.8615 1.4505097604 4.7145731082 -0.9915731082
NON/ShiLtJ both 2.2405555556 1.1396280975 4.4821414911 -0.00103038
NZB/BlNJ both 3.446 1.367553717 6.1359031227 0.7560968773
NZW/LacJ both 2.4708333333 1.9738937666 6.3533740633 -1.4117073966
PL/J both 3.4929166667 1.3957536677 6.2382875451 0.7475457883
RBF/DnJ both 0.6216666667 1.6514780111 3.8700332968 -2.6266999635
RIIIS/J both 3.0783333333 1.2484000323 5.5338676964 0.6227989703
SEA/GnJ both 3.428 1.367553717 6.1179031227 0.7380968773
SJL/J both 8.1555 1.4505097604 11.0085731082 5.3024268918
SM/J both 7.57025 1.4505097604 10.4233231082 4.7171768918
SWR/J both 0.8294285714 1.2661087187 3.3197949489 -1.660937806




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA