Project measure / variable:   Project1202   CFC.Baseline_14_Ntg_Chow

ID, description, units MPD:130394   CFC.Baseline_14_Ntg_Chow   CFC.Baseline    14 Ntg Chow  
Data set, strains Project1202   F1 AD-BXD   51 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - CFC.Baseline 14 Ntg Chow



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested50 strains42 strains
Mean of the strain means3.8558   None 3.3352   None
Median of the strain means3.1984   None 2.6421   None
SD of the strain means± 3.3049 ± 2.4144
Coefficient of variation (CV)0.8571 0.7239
Min–max range of strain means0.0   –   14.971   None 0.0   –   10.303   None
Mean sample size per strain6.6   mice 5.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 12.8909 12.8909 0.6224 0.4306
strain 38 3180.2604 83.6911 4.0406 < 0.0001
sex:strain 38 1018.0912 26.7919 1.2935 0.1187
Residuals 447 9258.5174 20.7126


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 5.29 5.0896   9 1.6965 0.9621 0.43
(B6.5XFAD x BXD100)F1-ADtg m 3.2567 1.8958   3 1.0946 0.5821 1.07, 4.44 -0.03
(B6.5XFAD x BXD101)F1 f 0.0 0.0   2   0.0 None -1.17
(B6.5XFAD x BXD 102)F1 f 12.89 0.60811   2   0.43 0.0472 12.46, 13.32 2.73
(B6.5XFAD x BXD113)F1 f 5.3738 7.0964   8 2.509 1.3206 0.46
(B6.5XFAD x BXD113)F1 m 1.6 0.72006   6 0.29396 0.45 0.71, 2.49 -0.72
(B6.5XFAD x BXD124)F1 f 1.5018 3.0829   11 0.92952 2.0528 -0.71
(B6.5XFAD x BXD124)F1 m 1.5229 1.96   7 0.7408 1.287 -0.75
(B6.5XFAD x BXD125)F1 f 3.9571 3.9232   7 1.4828 0.9914 0.03
(B6.5XFAD x BXD125)F1 m 7.9333 9.6713   6 3.9483 1.2191 1.9
(B6.5XFAD x BXD12)F1 f 0.08875 0.25102   8 0.08875 2.8284 -1.14
(B6.5XFAD x BXD12)F1 m 0.755 1.8029   8 0.63744 2.388 -1.07
(B6.5XFAD x BXD14)F1-ADtg f 0.23667 0.40992   3 0.23667 1.7321 -1.1
(B6.5XFAD x BXD14)F1-ADtg m 2.28 1.3645   6 0.55706 0.5985 -0.44
(B6.5XFAD x BXD152)F1 f 3.694 3.34   10 1.0562 0.9042 -0.05
(B6.5XFAD x BXD152)F1 m 3.198 3.5517   5 1.5884 1.1106 -0.06
(B6.5XFAD x BXD154)F1 f 1.09 1.6405   7 0.62004 1.505 -0.84
(B6.5XFAD x BXD154)F1 m 1.2717 1.9901   6 0.81244 1.5649 -0.85
(B6.5XFAD x BXD161)F1 f 1.0914 1.525   7 0.57639 1.3972 -0.84
(B6.5XFAD x BXD161)F1 m 2.5767 4.4031   6 1.7976 1.7088 -0.31
(B6.5XFAD x BXD169)F1 f 1.9029 3.5509   7 1.3421 1.8661 -0.59
(B6.5XFAD x BXD169)F1 m 2.204 4.0081   5 1.7925 1.8185 -0.47
(B6.5XFAD x BXD16)F1-ADtg f 3.6762 3.4228   13 0.94932 0.9311 -0.05
(B6.5XFAD x BXD16)F1-ADtg m 6.04 5.9277   6 2.42 0.9814 1.12
(B6.5XFAD x BXD172)F1 f 3.2 0.0   1   0.0 0.0 3.2, 3.2 -0.2
(B6.5XFAD x BXD19)F1 f 4.77 7.6386   7 2.8871 1.6014 0.28
(B6.5XFAD x BXD19)F1 m 1.0657 1.6878   7 0.63794 1.5837 -0.94
(B6.5XFAD x BXD22)F1-ADtg f 0.47333 0.81984   3 0.47333 1.7321 -1.02
(B6.5XFAD x BXD28)F1 f 7.388 2.3991   5 1.0729 0.3247 5.15, 10.83 1.07
(B6.5XFAD x BXD28)F1 m 6.792 6.1339   5 2.7431 0.9031 1.78, 17.44 1.43
(B6.5XFAD x BXD31)F1 f 1.919 3.0103   10 0.95193 1.5687 -0.59
(B6.5XFAD x BXD31)F1 m 4.332 2.496   5 1.1162 0.5762 1.95, 7.46 0.41
(B6.5XFAD x BXD32)F1-ADtg f 2.53 1.7848   4 0.89242 0.7055 -0.4
(B6.5XFAD x BXD32)F1-ADtg m 4.9717 5.761   6 2.3519 1.1588 0.71, 14.21 0.68
(B6.5XFAD x BXD33)F1 f 3.8175 4.0837   4 2.0418 1.0697 -0.01
(B6.5XFAD x BXD34)F1-ADtg f 4.5686 6.6108   7 2.4986 1.447 0.22
(B6.5XFAD x BXD34)F1-ADtg m 0.142 0.31752   5 0.142 2.2361 -1.32
(B6.5XFAD x BXD38)F1 f 2.1617 2.3855   6 0.97388 1.1035 -0.51
(B6.5XFAD x BXD38)F1 m 2.7914 4.1836   7 1.5812 1.4987 -0.23
(B6.5XFAD x BXD39)F1 f 14.971 11.973   7 4.5254 0.7997 3.36
(B6.5XFAD x BXD39)F1 m 10.303 8.8511   7 3.3454 0.8591 1.07, 26.64 2.89
(B6.5XFAD x BXD42)F1-ADtg f 1.1414 1.4668   7 0.5544 1.2851 -0.82
(B6.5XFAD x BXD42)F1-ADtg m 3.73 5.327   5 2.3823 1.4282 0.16
(B6.5XFAD x BXD48a)F1 f 2.8671 2.605   7 0.98458 0.9086 -0.3
(B6.5XFAD x BXD48a)F1 m 0.82833 0.97561   6 0.39829 1.1778 -1.04
(B6.5XFAD x BXD49)F1 f 1.42 2.0082   4 1.0041 1.4142 -0.74
(B6.5XFAD x BXD49)F1 m 1.065 1.5061   2   1.065 1.4142 -0.94
(B6.5XFAD x BXD50)F1 f 1.348 1.8458   5 0.82548 1.3693 -0.76
(B6.5XFAD x BXD50)F1 m 2.7075 2.5584   4 1.2792 0.9449 -0.26
(B6.5XFAD x BXD51)F1-ADtg m 2.31 1.7536   2   1.24 0.7591 1.07, 3.55 -0.42
(B6.5XFAD x BXD53)F1 f 1.82 1.2569   4 0.62846 0.6906 0.71, 3.37 -0.62
(B6.5XFAD x BXD55)F1-ADtg f 1.3325 2.665   4 1.3325 2.0 -0.76
(B6.5XFAD x BXD55)F1-ADtg m 2.522 3.5015   5 1.5659 1.3884 -0.34
(B6.5XFAD x BXD60)F1-ADtg f 4.3975 7.7379   4 3.8689 1.7596 0.16
(B6.5XFAD x BXD60)F1-ADtg m 3.6529 2.5054   7 0.94693 0.6859 0.13
(B6.5XFAD x BXD61)F1-ADtg f 2.135 4.1509   4 2.0754 1.9442 -0.52
(B6.5XFAD x BXD61)F1-ADtg m 5.595 7.3687   6 3.0083 1.317 0.94
(B6.5XFAD x BXD62)F1-ADtg f 12.115 7.7383   10 2.4471 0.6387 0.71, 22.91 2.5
(B6.5XFAD x BXD62)F1-ADtg m 7.8733 5.7032   3 3.2927 0.7244 2.49, 13.85 1.88
(B6.5XFAD x BXD64)F1 f 3.2425 4.2011   4 2.1005 1.2956 -0.19
(B6.5XFAD x BXD65a)F1 f 3.1967 7.1571   6 2.9219 2.2389 -0.2
(B6.5XFAD x BXD65)F1-ADtg f 1.314 1.4061   5 0.62884 1.0701 -0.77
(B6.5XFAD x BXD65)F1-ADtg m 1.7167 2.385   3 1.377 1.3893 -0.67
(B6.5XFAD x BXD66)F1-ADtg f 4.4175 3.8602   8 1.3648 0.8739 0.17
(B6.5XFAD x BXD66)F1-ADtg m 2.522 3.0687   5 1.3724 1.2168 -0.34
(B6.5XFAD x BXD68)F1-ADtg f 3.9062 4.8047   8 1.6987 1.23 0.02
(B6.5XFAD x BXD68)F1-ADtg m 1.7767 1.9021   6 0.77653 1.0706 -0.65
(B6.5XFAD x BXD73)F1 f 1.54 1.6422   6 0.67043 1.0664 -0.7
(B6.5XFAD x BXD73)F1 m 2.7517 5.5402   6 2.2618 2.0134 -0.24
(B6.5XFAD x BXD74)F1 f 4.795 6.079   10 1.9224 1.2678 0.28
(B6.5XFAD x BXD74)F1 m 5.0625 3.8184   8 1.35 0.7542 1.42, 12.08 0.72
(B6.5XFAD x BXD75)F1-ADtg f 2.984 3.6654   5 1.6392 1.2283 -0.26
(B6.5XFAD x BXD75)F1-ADtg m 2.31 2.7269   5 1.2195 1.1805 -0.42
(B6.5XFAD x BXD77)F1-ADtg f 12.308 12.846   4 6.423 1.0438 1.42, 28.6 2.56
(B6.5XFAD x BXD77)F1-ADtg m 3.056 4.1865   5 1.8723 1.3699 -0.12
(B6.5XFAD x BXD78)F1 f 5.8333 3.3603   6 1.3718 0.5761 1.6, 9.41 0.6
(B6.5XFAD x BXD78)F1 m 4.26 0.0   1   0.0 0.0 4.26, 4.26 0.38
(B6.5XFAD x BXD83)F1 f 5.0922 6.465   9 2.155 1.2696 0.37
(B6.5XFAD x BXD83)F1 m 7.3717 6.3383   6 2.5876 0.8598 1.67
(B6.5XFAD x BXD87)F1-ADtg f 8.0943 5.8152   7 2.1979 0.7184 1.28
(B6.5XFAD x BXD87)F1-ADtg m 3.9367 4.1162   6 1.6804 1.0456 0.25
(B6.5XFAD x BXD98)F1 f 6.5133 2.9841   3 1.7229 0.4582 3.91, 9.77 0.8
(B6.5XFAD x BXD99)F1-ADtg f 3.2618 4.2033   11 1.2674 1.2886 -0.18
(B6.5XFAD x BXD99)F1-ADtg m 2.28 2.5209   6 1.0291 1.1056 -0.44
(B6.5XFAD x D2)F1-ADtg f 2.452 4.3092   5 1.9271 1.7574 -0.42
(B6.5XFAD x D2)F1-ADtg m 0.0 0.0   1   0.0 None -1.38
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 3.3406 2.6318   16 0.65794 0.7878 -0.16
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 2.0875 1.8749   20 0.41923 0.8981 -0.52
C57BL/6J f 2.3094 3.4288   17 0.8316 1.4847 -0.47
C57BL/6J m 7.6279 4.3088   14 1.1516 0.5649 1.07, 14.39 1.78
DBA/2J f 3.02 4.2709   2   3.02 1.4142 -0.25
DBA/2J m 0.0 0.0   2   0.0 None -1.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 3.6761538462 1.2622497302 6.1568346021 1.1954730902
129S1/SvImJ 2 6.04 1.8579812951 9.6914632037 2.3885367963
A/J 1 2.53 2.2755530623 7.0021108318 -1.9421108318
A/J 2 4.9716666667 1.8579812951 8.6231298704 1.320203463
AKR/J 1 12.3075 2.2755530623 16.7796108318 7.8353891682
AKR/J 2 3.056 2.0353165335 7.0559775291 -0.9439775291
ALR/LtJ 1 1.5018181818 1.372210127 4.1986024818 -1.1949661182
ALR/LtJ 2 1.5228571429 1.720156428 4.9034551704 -1.8577408847
ALS/LtJ 1 3.9571428571 1.720156428 7.3377408847 0.5765448296
ALS/LtJ 2 7.9333333333 1.8579812951 11.584796537 4.2818701296
BALB/cJ 1 4.5685714286 1.720156428 7.9491694561 1.187973401
BALB/cJ 2 0.142 2.0353165335 4.1419775291 -3.8579775291
BPH/2J 1 1.348 2.0353165335 5.3479775291 -2.6519775291
BPH/2J 2 2.7075 2.2755530623 7.1796108318 -1.7646108318
BPL/1J 1 0.08875 1.6090590013 3.2510098954 -3.0735098954
BPL/1J 2 0.755 1.6090590013 3.9172598954 -2.4072598954
BPN/3J 1 1.9028571429 1.720156428 5.2834551704 -1.4777408847
BPN/3J 2 2.204 2.0353165335 6.2039775291 -1.7959775291
BTBR T+ Itpr3tf/J 1 5.29 1.5170353749 8.2714072212 2.3085927788
BTBR T+ Itpr3tf/J 2 3.2566666667 2.6275823462 8.4206154518 -1.9072821185
BUB/BnJ 1 3.694 1.4391861227 6.5224112354 0.8655887646
BUB/BnJ 2 3.198 2.0353165335 7.1979775291 -0.8019775291
C3H/HeJ 1 1.1414285714 1.720156428 4.522026599 -2.2391694561
C3H/HeJ 2 3.73 2.0353165335 7.7299775291 -0.2699775291
C57BL/10J 1 2.3094117647 1.1038053686 4.4787041563 0.1401193731
C57BL/10J 2 7.6278571429 1.216334275 10.0183009326 5.2374133531
C57BL/6J 1 1.3325 2.2755530623 5.8046108318 -3.1396108318
C57BL/6J 2 2.522 2.0353165335 6.5219775291 -1.4779775291
C57BLKS/J 1 1.54 1.8579812951 5.1914632037 -2.1114632037
C57BLKS/J 2 2.7516666667 1.8579812951 6.4031298704 -0.899796537
C57BR/cdJ 1 14.9714285714 1.720156428 18.352026599 11.5908305439
C57BR/cdJ 2 10.3028571429 1.720156428 13.6834551704 6.9222591153
C57L/J 1 5.0922222222 1.5170353749 8.0736294434 2.110815001
C57L/J 2 7.3716666667 1.8579812951 11.0231298704 3.720203463
C58/J 1 4.77 1.720156428 8.1505980276 1.3894019724
C58/J 2 1.0657142857 1.720156428 4.4463123133 -2.3148837418
CAST/EiJ 1 0.2366666667 2.6275823462 5.4006154518 -4.9272821185
CAST/EiJ 2 2.28 1.8579812951 5.9314632037 -1.3714632037
CBA/J 1 8.0942857143 1.720156428 11.4748837418 4.7136876867
CBA/J 2 3.9366666667 1.8579812951 7.5881298704 0.285203463
CE/J 1 1.09 1.720156428 4.4705980276 -2.2905980276
CE/J 2 1.2716666667 1.8579812951 4.9231298704 -2.379796537
DBA/2J 1 4.3975 2.2755530623 8.8696108318 -0.0746108318
DBA/2J 2 3.6528571429 1.720156428 7.0334551704 0.2722591153
FVB/NJ 1 2.135 2.2755530623 6.6071108318 -2.3371108318
FVB/NJ 2 5.595 1.8579812951 9.2464632037 1.9435367963
I/LnJ 1 1.919 1.4391861227 4.7474112354 -0.9094112354
I/LnJ 2 4.332 2.0353165335 8.3319775291 0.3320224709
KK/HlJ 1 5.37375 1.6090590013 8.5360098954 2.2114901046
KK/HlJ 2 1.6 1.8579812951 5.2514632037 -2.0514632037
LP/J 1 12.115 1.4391861227 14.9434112354 9.2865887646
LP/J 2 7.8733333333 2.6275823462 13.0372821185 2.7093845482
MA/MyJ 1 3.340625 1.1377765312 5.5766804159 1.1045695841
MA/MyJ 2 2.0875 1.0176582668 4.0874887646 0.0875112354
NOD/ShiLtJ 1 3.90625 1.6090590013 7.0685098954 0.7439901046
NOD/ShiLtJ 2 1.7766666667 1.8579812951 5.4281298704 -1.874796537
NON/ShiLtJ 1 1.42 2.2755530623 5.8921108318 -3.0521108318
NON/ShiLtJ 2 1.065 3.2181180026 7.3895197908 -5.2595197908
NZB/BlNJ 1 1.314 2.0353165335 5.3139775291 -2.6859775291
NZB/BlNJ 2 1.7166666667 2.6275823462 6.8806154518 -3.4472821185
NZW/LacJ 1 4.795 1.4391861227 7.6234112354 1.9665887646
NZW/LacJ 2 5.0625 1.6090590013 8.2247598954 1.9002401046
PL/J 1 2.984 2.0353165335 6.9839775291 -1.0159775291
PL/J 2 2.31 2.0353165335 6.3099775291 -1.6899775291
RBF/DnJ 1 2.8671428571 1.720156428 6.2477408847 -0.5134551704
RBF/DnJ 2 0.8283333333 1.8579812951 4.479796537 -2.8231298704
RIIIS/J 1 1.0914285714 1.720156428 4.472026599 -2.2891694561
RIIIS/J 2 2.5766666667 1.8579812951 6.2281298704 -1.074796537
SEA/GnJ 1 7.388 2.0353165335 11.3879775291 3.3880224709
SEA/GnJ 2 6.792 2.0353165335 10.7919775291 2.7920224709
SJL/J 1 3.2618181818 1.372210127 5.9586024818 0.5650338818
SJL/J 2 2.28 1.8579812951 5.9314632037 -1.3714632037
SM/J 1 2.1616666667 1.8579812951 5.8131298704 -1.489796537
SM/J 2 2.7914285714 1.720156428 6.172026599 -0.5891694561
SPRET/EiJ 1 3.02 3.2181180026 9.3445197908 -3.3045197908
SPRET/EiJ 2 0.0 3.2181180026 6.3245197908 -6.3245197908
SWR/J 1 4.4175 1.6090590013 7.5797598954 1.2552401046
SWR/J 2 2.522 2.0353165335 6.5219775291 -1.4779775291


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 4.8580769231 1.1230949286 7.0652788022 2.650875044
A/J both 3.7508333333 1.4688631856 6.6375684623 0.8640982043
AKR/J both 7.68175 1.5264874001 10.6817331468 4.6817668532
ALR/LtJ both 1.5123376623 1.1002157481 3.6745754259 -0.6499001012
ALS/LtJ both 5.9452380952 1.2660008521 8.4332908756 3.4571853149
BALB/cJ both 2.3552857143 1.3324274397 4.9738856865 -0.2633142579
BPH/2J both 2.02775 1.5264874001 5.0277331468 -0.9722331468
BPL/1J both 0.421875 1.1377765312 2.6579304159 -1.8141804159
BPN/3J both 2.0534285714 1.3324274397 4.6720285436 -0.5651714008
BTBR T+ Itpr3tf/J both 4.2733333333 1.5170353749 7.2547405545 1.2919261121
BUB/BnJ both 3.446 1.246371743 5.8954759822 0.9965240178
C3H/HeJ both 2.4357142857 1.3324274397 5.0543142579 -0.1828856865
C57BL/10J both 4.9686344538 0.8212574749 6.5826396422 3.3546292654
C57BL/6J both 1.92725 1.5264874001 4.9272331468 -1.0727331468
C57BLKS/J both 2.1458333333 1.3137911731 4.7278077259 -0.4361410592
C57BR/cdJ both 12.6371428571 1.216334275 15.0275866469 10.2466990674
C57L/J both 6.2319444444 1.1993217689 8.5889538073 3.8749350816
C58/J both 2.9178571429 1.216334275 5.3083009326 0.5274133531
CAST/EiJ both 1.2583333333 1.6090590013 4.4205932287 -1.903926562
CBA/J both 6.0154761905 1.2660008521 8.5035289709 3.5274234101
CE/J both 1.1808333333 1.2660008521 3.6688861137 -1.307219447
DBA/2J both 4.0251785714 1.4262783631 6.8282223775 1.2221347653
FVB/NJ both 3.865 1.4688631856 6.751735129 0.978264871
I/LnJ both 3.1255 1.246371743 5.5749759822 0.6760240178
KK/HlJ both 3.486875 1.2289391119 5.9020908896 1.0716591104
LP/J both 9.9941666667 1.4979524093 12.9380704173 7.050262916
MA/MyJ both 2.7140625 0.7632437001 4.2140540734 1.2140709266
NOD/ShiLtJ both 2.8414583333 1.2289391119 5.2566742229 0.4262424437
NON/ShiLtJ both 1.2425 1.9706867596 5.1154615889 -2.6304615889
NZB/BlNJ both 1.5153333333 1.6618289907 4.7813013096 -1.750634643
NZW/LacJ both 4.92875 1.079389592 7.0500584266 2.8074415734
PL/J both 2.647 1.4391861227 5.4754112354 -0.1814112354
RBF/DnJ both 1.8477380952 1.2660008521 4.3357908756 -0.6403146851
RIIIS/J both 1.834047619 1.2660008521 4.3221003994 -0.6540051613
SEA/GnJ both 7.09 1.4391861227 9.9184112354 4.2615887646
SJL/J both 2.7709090909 1.1548869128 5.0405912872 0.5012268946
SM/J both 2.476547619 1.2660008521 4.9646003994 -0.0115051613
SPRET/EiJ both 1.51 2.2755530623 5.9821108318 -2.9621108318
SWR/J both 3.46975 1.2972648401 6.0192454344 0.9202545656




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA