Project measure / variable:   Project1202   CFC.Baseline_3_Ntg_Chow

ID, description, units MPD:130392   CFC.Baseline_3_Ntg_Chow   CFC.Baseline    3 Ntg Chow  
Data set, strains Project1202   F1 AD-BXD   44 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - CFC.Baseline 3 Ntg Chow



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested43 strains35 strains
Mean of the strain means2.8723   None 1.5516   None
Median of the strain means1.741   None 1.1113   None
SD of the strain means± 4.1792 ± 1.9505
Coefficient of variation (CV)1.455 1.2571
Min–max range of strain means0.0   –   26.11   None 0.0   –   10.565   None
Mean sample size per strain6.2   mice 6.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 70.8034 70.8034 7.472 0.0066
strain 32 927.2753 28.9774 3.058 < 0.0001
sex:strain 32 531.9421 16.6232 1.7543 0.008
Residuals 391 3705.0503 9.4758


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 3.5533 4.8355   3 2.7918 1.3608 0.16
(B6.5XFAD x BXD113)F1 f 1.474 1.6208   10 0.51253 1.0996 -0.33
(B6.5XFAD x BXD113)F1 m 0.29667 0.51384   3 0.29667 1.7321 -0.64
(B6.5XFAD x BXD124)F1 f 0.15286 0.40442   7 0.15286 2.6458 -0.65
(B6.5XFAD x BXD124)F1 m 3.0443 4.6126   7 1.7434 1.5152 0.77
(B6.5XFAD x BXD125)F1 f 1.3617 2.8436   6 1.1609 2.0883 -0.36
(B6.5XFAD x BXD125)F1 m 2.522 2.4307   5 1.087 0.9638 0.5
(B6.5XFAD x BXD12)F1 f 0.11833 0.28986   6 0.11833 2.4495 -0.66
(B6.5XFAD x BXD12)F1 m 0.604 0.88365   5 0.39518 1.463 -0.49
(B6.5XFAD x BXD14)F1-ADtg f 0.355 0.59403   6 0.24251 1.6733 -0.6
(B6.5XFAD x BXD14)F1-ADtg m 0.43143 1.1415   7 0.43143 2.6458 -0.57
(B6.5XFAD x BXD152)F1 f 5.3075 4.8553   8 1.7166 0.9148 0.58
(B6.5XFAD x BXD152)F1 m 3.412 3.2246   5 1.4421 0.9451 0.71, 8.17 0.95
(B6.5XFAD x BXD154)F1 f 2.3343 3.9735   7 1.5018 1.7022 -0.13
(B6.5XFAD x BXD154)F1 m 0.1775 0.50205   8 0.1775 2.8284 -0.7
(B6.5XFAD x BXD161)F1 f 4.0256 7.9565   9 2.6522 1.9765 0.28
(B6.5XFAD x BXD161)F1 m 0.498 0.46051   5 0.20595 0.9247 -0.54
(B6.5XFAD x BXD169)F1 f 0.71 1.1417   8 0.40365 1.608 -0.52
(B6.5XFAD x BXD169)F1 m 2.6143 3.8312   7 1.448 1.4655 0.54
(B6.5XFAD x BXD16)F1-ADtg f 2.7782 2.7116   11 0.81757 0.976 -0.02
(B6.5XFAD x BXD16)F1-ADtg m 10.565 13.188   2   9.325 1.2482 1.24, 19.89 4.62
(B6.5XFAD x BXD172)F1 f 1.78 0.0   1   0.0 0.0 1.78, 1.78 -0.26
(B6.5XFAD x BXD19)F1 f 0.2675 0.49531   8 0.17512 1.8516 -0.62
(B6.5XFAD x BXD19)F1 m 0.284 0.38888   5 0.17391 1.3693 -0.65
(B6.5XFAD x BXD22)F1-ADtg m 0.0 0.0   2   0.0 None -0.8
(B6.5XFAD x BXD28)F1 f 1.2591 1.7687   11 0.53328 1.4047 -0.39
(B6.5XFAD x BXD28)F1 m 1.4971 1.2466   7 0.47116 0.8326 -0.03
(B6.5XFAD x BXD31)F1 f 3.2 0.0   1   0.0 0.0 3.2, 3.2 0.08
(B6.5XFAD x BXD33)F1 f 26.11 0.0   1   0.0 0.0 26.11, 26.11 5.56
(B6.5XFAD x BXD34)F1-ADtg f 2.04 1.8809   2   1.33 0.922 0.71, 3.37 -0.2
(B6.5XFAD x BXD38)F1 f 1.741 2.6164   10 0.82738 1.5028 -0.27
(B6.5XFAD x BXD38)F1 m 3.0714 3.188   7 1.205 1.038 0.71, 9.06 0.78
(B6.5XFAD x BXD39)F1 f 7.2838 7.932   8 2.8044 1.089 1.06
(B6.5XFAD x BXD39)F1 m 1.8 2.0696   7 0.78223 1.1498 0.13
(B6.5XFAD x BXD48a)F1 f 4.62 2.0494   3 1.1832 0.4436 2.31, 6.22 0.42
(B6.5XFAD x BXD48a)F1 m 0.65167 0.6531   6 0.26663 1.0022 -0.46
(B6.5XFAD x BXD49)F1 f 2.6633 4.613   3 2.6633 1.7321 -0.05
(B6.5XFAD x BXD50)F1 f 0.0 0.0   7 0.0 None -0.69
(B6.5XFAD x BXD50)F1 m 2.0133 2.2667   6 0.92536 1.1258 0.24
(B6.5XFAD x BXD55)F1-ADtg f 0.0 0.0   8 0.0 None -0.69
(B6.5XFAD x BXD55)F1-ADtg m 0.0 0.0   4 0.0 None -0.8
(B6.5XFAD x BXD60)F1-ADtg f 0.6225 0.73287   4 0.36643 1.1773 -0.54
(B6.5XFAD x BXD60)F1-ADtg m 0.0 0.0   5 0.0 None -0.8
(B6.5XFAD x BXD61)F1-ADtg f 0.355 0.66434   8 0.23488 1.8714 -0.6
(B6.5XFAD x BXD61)F1-ADtg m 0.71125 0.77775   8 0.27498 1.0935 -0.43
(B6.5XFAD x BXD62)F1-ADtg f 7.586 7.1267   10 2.2536 0.9394 1.42, 21.85 1.13
(B6.5XFAD x BXD62)F1-ADtg m 4.1775 3.8039   4 1.9019 0.9106 1.78, 9.77 1.35
(B6.5XFAD x BXD64)F1 f 1.155 1.6334   2   1.155 1.4142 -0.41
(B6.5XFAD x BXD65)F1-ADtg f 1.3033 2.0184   6 0.82401 1.5487 -0.38
(B6.5XFAD x BXD65)F1-ADtg m 0.29667 0.47348   6 0.1933 1.596 -0.64
(B6.5XFAD x BXD66)F1-ADtg f 1.185 1.6472   6 0.67248 1.3901 -0.4
(B6.5XFAD x BXD66)F1-ADtg m 0.5775 0.65615   8 0.23198 1.1362 -0.5
(B6.5XFAD x BXD68)F1-ADtg f 1.3775 2.3061   4 1.153 1.6741 -0.36
(B6.5XFAD x BXD68)F1-ADtg m 1.155 0.9456   4 0.4728 0.8187 -0.2
(B6.5XFAD x BXD73)F1 f 0.55857 0.95928   7 0.36257 1.7174 -0.55
(B6.5XFAD x BXD73)F1 m 1.2977 2.1827   13 0.60536 1.682 -0.13
(B6.5XFAD x BXD74)F1 f 2.4867 3.169   9 1.0563 1.2744 -0.09
(B6.5XFAD x BXD74)F1 m 0.8 0.93538   4 0.46769 1.1692 -0.39
(B6.5XFAD x BXD75)F1-ADtg f 1.1671 1.6089   7 0.60812 1.3785 -0.41
(B6.5XFAD x BXD75)F1-ADtg m 0.195 0.42966   10 0.13587 2.2034 -0.7
(B6.5XFAD x BXD77)F1-ADtg f 2.1017 1.409   6 0.57521 0.6704 0.71, 4.44 -0.18
(B6.5XFAD x BXD77)F1-ADtg m 1.1113 1.2487   8 0.44147 1.1237 -0.23
(B6.5XFAD x BXD78)F1 f 8.11 6.5451   3 3.7788 0.807 0.71, 13.14 1.25
(B6.5XFAD x BXD83)F1 f 3.836 3.5878   10 1.1346 0.9353 0.23
(B6.5XFAD x BXD83)F1 m 0.53333 0.65567   6 0.26768 1.2294 -0.52
(B6.5XFAD x BXD87)F1-ADtg f 2.5991 2.8997   11 0.8743 1.1157 -0.07
(B6.5XFAD x BXD87)F1-ADtg m 1.575 2.0201   8 0.71423 1.2826 0.01
(B6.5XFAD x BXD98)F1 f 5.33 0.0   1   0.0 0.0 5.33, 5.33 0.59
(B6.5XFAD x BXD99)F1-ADtg f 4.778 7.3283   10 2.3174 1.5338 0.46
(B6.5XFAD x BXD99)F1-ADtg m 1.348 1.3778   5 0.61617 1.0221 -0.1
(B6.5XFAD x D2)F1-ADtg f 1.2686 1.596   7 0.60322 1.2581 -0.38
(B6.5XFAD x D2)F1-ADtg m 0.142 0.31752   5 0.142 2.2361 -0.72
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 3.2 0.0   1   0.0 0.0 3.2, 3.2 0.08
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 1.555 2.0984   4 1.0492 1.3495 0.0
C57BL/6J f 0.50333 0.8728   6 0.35632 1.734 -0.57
C57BL/6J m 1.4754 1.8392   13 0.51011 1.2466 -0.04
DBA/2J f 0.852 0.92573   5 0.414 1.0865 -0.48
DBA/2J m 3.872 5.4136   5 2.4211 1.3982 1.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 0.0 1.0883377262 2.1397260375 -2.1397260375
129S1/SvImJ 2 0.0 1.5391419728 3.026029582 -3.026029582
A/J 1 0.6225 1.5391419728 3.648529582 -2.403529582
A/J 2 0.0 1.3766504313 2.7065631389 -2.7065631389
AKR/J 1 1.474 0.9734388553 3.3878291492 -0.4398291492
AKR/J 2 0.2966666667 1.7772480646 3.7908246541 -3.1974913208
ALR/LtJ 1 2.3342857143 1.1634819693 4.6217490668 0.0468223618
ALR/LtJ 2 0.1775 1.0883377262 2.3172260375 -1.9622260375
ALS/LtJ 1 4.0255555556 1.0260946485 6.0429086102 2.0082025009
ALS/LtJ 2 0.498 1.3766504313 3.2045631389 -2.2085631389
BALB/cJ 1 0.355 1.0883377262 2.4947260375 -1.7847260375
BALB/cJ 2 0.71125 1.0883377262 2.8509760375 -1.4284760375
BPH/2J 1 0.71 1.0883377262 2.8497260375 -1.4297260375
BPH/2J 2 2.6142857143 1.1634819693 4.9017490668 0.3268223618
BPL/1J 1 0.0 1.1634819693 2.2874633525 -2.2874633525
BPL/1J 2 2.0133333333 1.2567041583 4.4840761408 -0.4574094741
BPN/3J 1 7.28375 1.0883377262 9.4234760375 5.1440239625
BPN/3J 2 1.8 1.1634819693 4.0874633525 -0.4874633525
BTBR T+ Itpr3tf/J 1 0.355 1.2567041583 2.8257428075 -2.1157428075
BTBR T+ Itpr3tf/J 2 0.4314285714 1.1634819693 2.7188919239 -1.8560347811
BUB/BnJ 1 0.2675 1.0883377262 2.4072260375 -1.8722260375
BUB/BnJ 2 0.284 1.3766504313 2.9905631389 -2.4225631389
C3H/HeJ 1 7.586 0.9734388553 9.4998291492 5.6721708508
C3H/HeJ 2 4.1775 1.5391419728 7.203529582 1.151470418
C57BL/6J 1 1.3033333333 1.2567041583 3.7740761408 -1.1674094741
C57BL/6J 2 0.2966666667 1.2567041583 2.7674094741 -2.1740761408
C57BR/cdJ 1 0.5033333333 1.2567041583 2.9740761408 -1.9674094741
C57BR/cdJ 2 1.4753846154 0.8537623543 3.1539238183 -0.2031545875
C58/J 1 4.62 1.7772480646 8.1141579874 1.1258420126
C58/J 2 0.6516666667 1.2567041583 3.1224094741 -1.8190761408
CAST/EiJ 1 2.7781818182 0.9281375314 4.6029463142 0.9534173222
CAST/EiJ 2 10.565 2.1766754523 14.844452075 6.285547925
CBA/J 1 0.1183333333 1.2567041583 2.5890761408 -2.3524094741
CBA/J 2 0.604 1.3766504313 3.3105631389 -2.1025631389
CE/J 1 1.2590909091 0.9281375314 3.0838554051 -0.5656735869
CE/J 2 1.4971428571 1.1634819693 3.7846062097 -0.7903204954
DBA/2J 1 1.185 1.2567041583 3.6557428075 -1.2857428075
DBA/2J 2 0.5775 1.0883377262 2.7172260375 -1.5622260375
FVB/NJ 1 1.3775 1.5391419728 4.403529582 -1.648529582
FVB/NJ 2 1.155 1.5391419728 4.181029582 -1.871029582
I/LnJ 1 2.4866666667 1.0260946485 4.5040197213 0.469313612
I/LnJ 2 0.8 1.5391419728 3.826029582 -2.226029582
KK/HlJ 1 1.3616666667 1.2567041583 3.8324094741 -1.1090761408
KK/HlJ 2 2.522 1.3766504313 5.2285631389 -0.1845631389
LP/J 1 1.1671428571 1.1634819693 3.4546062097 -1.1203204954
LP/J 2 0.195 0.9734388553 2.1088291492 -1.7188291492
MA/MyJ 1 5.3075 1.0883377262 7.4472260375 3.1677739625
MA/MyJ 2 3.412 1.3766504313 6.1185631389 0.7054368611
NOD/ShiLtJ 1 4.778 0.9734388553 6.6918291492 2.8641708508
NOD/ShiLtJ 2 1.348 1.3766504313 4.0545631389 -1.3585631389
NZB/BlNJ 1 2.1016666667 1.2567041583 4.5724094741 -0.3690761408
NZB/BlNJ 2 1.11125 1.0883377262 3.2509760375 -1.0284760375
PL/J 1 1.2685714286 1.1634819693 3.5560347811 -1.0188919239
PL/J 2 0.142 1.3766504313 2.8485631389 -2.5645631389
RBF/DnJ 1 0.852 1.3766504313 3.5585631389 -1.8545631389
RBF/DnJ 2 3.872 1.3766504313 6.5785631389 1.1654368611
RIIIS/J 1 1.741 0.9734388553 3.6548291492 -0.1728291492
RIIIS/J 2 3.0714285714 1.1634819693 5.3588919239 0.7839652189
SEA/GnJ 1 0.5585714286 1.1634819693 2.8460347811 -1.7288919239
SEA/GnJ 2 1.2976923077 0.8537623543 2.9762315106 -0.3808468952
SJL/J 1 0.1528571429 1.1634819693 2.4403204954 -2.1346062097
SJL/J 2 3.0442857143 1.1634819693 5.3317490668 0.7568223618
SM/J 1 3.836 0.9734388553 5.7498291492 1.9221708508
SM/J 2 0.5333333333 1.2567041583 3.0040761408 -1.9374094741
SWR/J 1 2.5990909091 0.9281375314 4.4238554051 0.7743264131
SWR/J 2 1.575 1.0883377262 3.7147260375 -0.5647260375


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0 0.9425281188 1.8530571056 -1.8530571056
A/J both 0.31125 1.0324878235 2.3411723542 -1.7186723542
AKR/J both 0.8853333333 1.0131872838 2.8773098677 -1.106643201
ALR/LtJ both 1.2558928571 0.7965816498 2.8220119542 -0.3102262399
ALS/LtJ both 2.2617777778 0.8584923759 3.949616438 0.5739391176
BALB/cJ both 0.533125 0.7695709864 2.046139791 -0.979889791
BPH/2J both 1.6621428571 0.7965816498 3.2282619542 0.0960237601
BPL/1J both 1.0066666667 0.8562995437 2.69019411 -0.6768607767
BPN/3J both 4.541875 0.7965816498 6.107994097 2.975755903
BTBR T+ Itpr3tf/J both 0.3932142857 0.8562995437 2.076741729 -1.2903131576
BUB/BnJ both 0.27575 0.8774459266 2.0008522825 -1.4493522825
C3H/HeJ both 5.88175 0.9105686709 7.6719732433 4.0915267567
C57BL/6J both 0.8 0.8886240323 2.5470789937 -0.9470789937
C57BR/cdJ both 0.9893589744 0.7596406221 2.4828501759 -0.5041322272
C58/J both 2.6358333333 1.0883377262 4.7755593708 0.4961072959
CAST/EiJ both 6.6715909091 1.183147846 8.9977183523 4.3454634659
CBA/J both 0.3611666667 0.9319967478 2.1935185737 -1.4711852404
CE/J both 1.3781168831 0.7441655679 2.8411833593 -0.0849495931
DBA/2J both 0.88125 0.8312316686 2.5154927555 -0.7529927555
FVB/NJ both 1.26625 1.0883377262 3.4059760375 -0.8734760375
I/LnJ both 1.6433333333 0.9249092172 3.4617508031 -0.1750841365
KK/HlJ both 1.9418333333 0.9319967478 3.7741852404 0.1094814263
LP/J both 0.6810714286 0.7584974452 2.1723150875 -0.8101722304
MA/MyJ both 4.35975 0.8774459266 6.0848522825 2.6346477175
NOD/ShiLtJ both 3.063 0.8430227777 4.7204246617 1.4055753383
NZB/BlNJ both 1.6064583333 0.8312316686 3.2407010889 -0.0277844222
PL/J both 0.7052857143 0.9012292581 2.4771472082 -1.0665757796
RBF/DnJ both 2.362 0.9734388553 4.2758291492 0.4481708508
RIIIS/J both 2.4062142857 0.7584974452 3.8974579447 0.9149706268
SEA/GnJ both 0.9281318681 0.7215608863 2.3467564172 -0.4904926809
SJL/J both 1.5985714286 0.8227059903 3.2160522769 -0.0189094197
SM/J both 2.1846666667 0.7948094971 3.7473016235 0.6220317099
SWR/J both 2.0870454545 0.7151779994 3.4931209309 0.6809699782




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA