Project measure / variable:   Project1202   Ymaze.Prct.SponAlt_6_5XFAD_Chow

ID, description, units MPD:130370   Ymaze.Prct.SponAlt_6_5XFAD_Chow   Ymaze.Prct.SponAlt    6 5XFAD Chow  
Data set, strains Project1202   F1 AD-BXD   52 strains     sex: both
Procedure None
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  STRAIN COMPARISON PLOT
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Project1202 - Ymaze.Prct.SponAlt 6 5XFAD Chow



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested52 strains33 strains
Mean of the strain means56.96   None 60.68   None
Median of the strain means56.6   None 60.25   None
SD of the strain means± 6.5539 ± 5.9909
Coefficient of variation (CV)0.1151 0.0987
Min–max range of strain means40.143   –   71.0   None 49.25   –   70.33   None
Mean sample size per strain8.4   mice 9.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 976.4787 976.4787 4.0264 0.0452
strain 31 13432.33 433.301 1.7867 0.0061
sex:strain 31 9747.5342 314.4366 1.2965 0.1329
Residuals 590 143085.8481 242.5184


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 63.0 26.87   2   19.0 0.4265 44.0, 82.0 0.92
(B6.5XFAD x BXD101)F1 f 53.4 17.473   5 7.8141 0.3272 27.0, 75.0 -0.54
(B6.5XFAD x BXD 102)F1 f 62.0 25.456   2   18.0 0.4106 44.0, 80.0 0.77
(B6.5XFAD x BXD 102)F1 m 67.0 0.0   1   0.0 0.0 67.0, 67.0 1.06
(B6.5XFAD x BXD113)F1 f 48.0 31.726   12 9.1585 0.661 -1.37
(B6.5XFAD x BXD113)F1 m 67.5 15.233   10 4.8172 0.2257 53.0, 100.0 1.14
(B6.5XFAD x BXD124)F1 f 59.45 15.233   20 3.4062 0.2562 33.0, 91.0 0.38
(B6.5XFAD x BXD124)F1 m 56.33 15.591   6 6.3648 0.2768 33.0, 82.0 -0.73
(B6.5XFAD x BXD125)F1 f 59.33 12.369   9 4.1231 0.2085 32.0, 74.0 0.36
(B6.5XFAD x BXD125)F1 m 60.91 9.0604   11 2.7318 0.1488 50.0, 80.0 0.04
(B6.5XFAD x BXD12)F1 f 58.47 12.526   17 3.0379 0.2142 38.0, 78.0 0.23
(B6.5XFAD x BXD12)F1 m 58.93 16.198   14 4.3291 0.2749 25.0, 83.0 -0.29
(B6.5XFAD x BXD14)F1-ADtg f 45.0 7.0711   2   5.0 0.1571 40.0, 50.0 -1.83
(B6.5XFAD x BXD14)F1-ADtg m 60.0 16.497   15 4.2594 0.2749 13.0, 79.0 -0.11
(B6.5XFAD x BXD152)F1 f 57.83 5.9133   6 2.4141 0.1022 50.0, 67.0 0.13
(B6.5XFAD x BXD152)F1 m 67.2 21.017   5 9.3989 0.3127 44.0, 100.0 1.09
(B6.5XFAD x BXD154)F1 f 65.0 15.612   9 5.2042 0.2402 46.0, 100.0 1.23
(B6.5XFAD x BXD154)F1 m 64.5 13.368   6 5.4574 0.2073 46.0, 77.0 0.64
(B6.5XFAD x BXD161)F1 f 58.0 15.991   8 5.6537 0.2757 38.0, 88.0 0.16
(B6.5XFAD x BXD161)F1 m 57.69 14.003   16 3.5009 0.2427 35.0, 76.0 -0.5
(B6.5XFAD x BXD169)F1 f 50.29 17.442   7 6.5926 0.3469 29.0, 79.0 -1.02
(B6.5XFAD x BXD169)F1 m 57.0 8.4853   6 3.4641 0.1489 50.0, 73.0 -0.61
(B6.5XFAD x BXD16)F1-ADtg f 63.0 7.9373   3 4.5826 0.126 57.0, 72.0 0.92
(B6.5XFAD x BXD16)F1-ADtg m 55.8 10.379   10 3.2823 0.186 43.0, 69.0 -0.81
(B6.5XFAD x BXD172)F1 f 63.6 8.792   5 3.9319 0.1382 52.0, 76.0 1.01
(B6.5XFAD x BXD19)F1 f 48.889 8.9085   9 2.9695 0.1822 33.0, 60.0 -1.23
(B6.5XFAD x BXD19)F1 m 63.0 8.165   4 4.0825 0.1296 55.0, 71.0 0.39
(B6.5XFAD x BXD22)F1-ADtg f 56.8 8.4676   5 3.7868 0.1491 45.0, 67.0 -0.02
(B6.5XFAD x BXD28)F1 f 66.0 13.435   13 3.7262 0.2036 43.0, 89.0 1.38
(B6.5XFAD x BXD28)F1 m 50.17 26.34   12 7.6037 0.525 -1.75
(B6.5XFAD x BXD31)F1 f 61.6 15.821   5 7.0753 0.2568 38.0, 78.0 0.71
(B6.5XFAD x BXD32)F1-ADtg f 57.0 13.614   4 6.8069 0.2388 40.0, 68.0 0.01
(B6.5XFAD x BXD33)F1 f 48.909 16.257   11 4.9017 0.3324 14.0, 73.0 -1.23
(B6.5XFAD x BXD34)F1-ADtg f 60.33 9.2376   3 5.3333 0.1531 55.0, 71.0 0.51
(B6.5XFAD x BXD38)F1 f 60.1 10.999   10 3.4783 0.183 42.0, 82.0 0.48
(B6.5XFAD x BXD38)F1 m 69.12 13.043   8 4.6115 0.1887 55.0, 91.0 1.41
(B6.5XFAD x BXD39)F1 f 40.143 22.349   7 8.4471 0.5567 -2.57
(B6.5XFAD x BXD39)F1 m 52.33 24.305   9 8.1018 0.4644 -1.39
(B6.5XFAD x BXD42)F1-ADtg f 55.67 11.015   3 6.3596 0.1979 43.0, 63.0 -0.2
(B6.5XFAD x BXD48a)F1 f 51.25 10.689   4 5.3444 0.2086 38.0, 64.0 -0.87
(B6.5XFAD x BXD49)F1 f 52.0 37.408   4 18.704 0.7194 -0.76
(B6.5XFAD x BXD50)F1 f 61.25 7.3824   8 2.6101 0.1205 50.0, 73.0 0.65
(B6.5XFAD x BXD50)F1 m 65.07 12.162   15 3.1403 0.1869 40.0, 82.0 0.73
(B6.5XFAD x BXD51)F1-ADtg f 67.0 4.2426   2   3.0 0.0633 64.0, 70.0 1.53
(B6.5XFAD x BXD53)F1 f 55.33 12.941   6 5.2831 0.2339 37.0, 69.0 -0.25
(B6.5XFAD x BXD55)F1-ADtg f 56.2 13.33   5 5.9615 0.2372 43.0, 77.0 -0.12
(B6.5XFAD x BXD55)F1-ADtg m 60.25 9.8959   8 3.4987 0.1642 46.0, 77.0 -0.07
(B6.5XFAD x BXD60)F1-ADtg f 67.71 12.189   7 4.607 0.18 55.0, 92.0 1.64
(B6.5XFAD x BXD60)F1-ADtg m 65.33 13.257   9 4.419 0.2029 37.0, 78.0 0.78
(B6.5XFAD x BXD61)F1-ADtg f 55.11 11.973   9 3.9911 0.2173 36.0, 75.0 -0.28
(B6.5XFAD x BXD61)F1-ADtg m 65.89 6.4893   9 2.1631 0.0985 59.0, 75.0 0.87
(B6.5XFAD x BXD62)F1-ADtg f 47.0 23.123   7 8.7396 0.492 -1.52
(B6.5XFAD x BXD62)F1-ADtg m 58.5 9.5864   6 3.9137 0.1639 40.0, 67.0 -0.36
(B6.5XFAD x BXD64)F1 f 54.2 9.5893   10 3.0324 0.1769 38.0, 67.0 -0.42
(B6.5XFAD x BXD65a)F1 f 55.71 11.99   14 3.2044 0.2152 32.0, 73.0 -0.19
(B6.5XFAD x BXD65)F1-ADtg f 53.92 4.0303   13 1.1178 0.0747 50.0, 63.0 -0.46
(B6.5XFAD x BXD65)F1-ADtg m 61.5 14.455   10 4.571 0.235 40.0, 87.0 0.14
(B6.5XFAD x BXD66)F1-ADtg f 56.73 11.199   11 3.3766 0.1974 37.0, 80.0 -0.04
(B6.5XFAD x BXD66)F1-ADtg m 50.78 21.288   9 7.0961 0.4192 -1.65
(B6.5XFAD x BXD68)F1-ADtg f 65.57 8.5099   14 2.2744 0.1298 50.0, 79.0 1.31
(B6.5XFAD x BXD68)F1-ADtg m 65.2 6.4962   5 2.9052 0.0996 58.0, 73.0 0.76
(B6.5XFAD x BXD70)F1-ADtg f 71.0 16.553   4 8.2765 0.2331 52.0, 92.0 2.14
(B6.5XFAD x BXD73)F1 f 68.79 13.331   14 3.5629 0.1938 41.0, 100.0 1.8
(B6.5XFAD x BXD73)F1 m 65.44 8.9318   9 2.9773 0.1365 50.0, 78.0 0.8
(B6.5XFAD x BXD74)F1 f 49.667 24.026   9 8.0087 0.4837 -1.11
(B6.5XFAD x BXD74)F1 m 68.67 20.112   9 6.7041 0.2929 39.0, 100.0 1.33
(B6.5XFAD x BXD75)F1-ADtg f 56.47 14.232   15 3.6747 0.252 33.0, 80.0 -0.08
(B6.5XFAD x BXD75)F1-ADtg m 58.0 16.365   11 4.9341 0.2821 20.0, 82.0 -0.45
(B6.5XFAD x BXD77)F1-ADtg f 54.0 12.942   9 4.3141 0.2397 40.0, 80.0 -0.45
(B6.5XFAD x BXD77)F1-ADtg m 57.67 10.152   6 4.1446 0.176 40.0, 69.0 -0.5
(B6.5XFAD x BXD78)F1 f 50.0 5.099   4 2.5495 0.102 45.0, 57.0 -1.06
(B6.5XFAD x BXD83)F1 f 56.0 13.48   8 4.766 0.2407 33.0, 71.0 -0.15
(B6.5XFAD x BXD83)F1 m 49.25 19.619   4 9.8096 0.3984 20.0, 62.0 -1.91
(B6.5XFAD x BXD87)F1-ADtg f 60.12 17.196   16 4.2991 0.286 33.0, 100.0 0.48
(B6.5XFAD x BXD87)F1-ADtg m 65.75 6.431   8 2.2737 0.0978 57.0, 75.0 0.85
(B6.5XFAD x BXD89)F1-ADtg f 47.8 5.4037   5 2.4166 0.113 42.0, 56.0 -1.4
(B6.5XFAD x BXD98)F1 f 66.0 1.4142   2   1.0 0.0214 65.0, 67.0 1.38
(B6.5XFAD x BXD99)F1-ADtg f 54.15 22.605   13 6.2694 0.4174 -0.43
(B6.5XFAD x BXD99)F1-ADtg m 59.77 11.137   13 3.0888 0.1863 32.0, 72.0 -0.15
(B6.5XFAD x D2)F1-ADtg f 58.64 8.9025   11 2.6842 0.1518 50.0, 81.0 0.26
(B6.5XFAD x D2)F1-ADtg m 70.33 8.4301   6 3.4416 0.1199 62.0, 83.0 1.61
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 52.21 19.257   19 4.4179 0.3688 -0.73
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 58.04 18.297   25 3.6595 0.3153 20.0, 92.0 -0.44
C57BL/6J f 56.47 7.4725   15 1.9294 0.1323 46.0, 76.0 -0.08
C57BL/6J m 49.4 20.51   25 4.102 0.4152 -1.88


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 56.2 6.964458151 69.8781463888 42.5218536112
129S1/SvImJ 2 60.25 5.5058876065 71.0635241894 49.4364758106
A/J 1 67.7142857143 5.8860414382 79.2744293315 56.154142097
A/J 2 65.3333333333 5.1910006174 75.5284217105 55.1382449562
AKR/J 1 48.0 4.4955384057 56.8292055284 39.1707944716
AKR/J 2 67.5 4.9246155859 77.1719100656 57.8280899344
ALR/LtJ 1 57.8333333333 6.3576513835 70.3197155366 45.34695113
ALR/LtJ 2 67.2 6.964458151 80.8781463888 53.5218536112
ALS/LtJ 1 65.0 5.1910006174 75.1950883772 54.8049116228
ALS/LtJ 2 64.5 6.3576513835 76.9863822033 52.0136177967
BALB/cJ 1 55.1111111111 5.1910006174 65.3061994883 44.916022734
BALB/cJ 2 65.8888888889 5.1910006174 76.083977266 55.6938005117
BPH/2J 1 58.0 5.5058876065 68.8135241894 47.1864758106
BPH/2J 2 57.6875 3.893250463 65.3338162829 50.0411837171
BPL/1J 1 59.3333333333 5.1910006174 69.5284217105 49.1382449562
BPL/1J 2 60.9090909091 4.6954367276 70.1308953231 51.687286495
BPN/3J 1 60.1 4.9246155859 69.7719100656 50.4280899344
BPN/3J 2 69.125 5.5058876065 79.9385241894 58.3114758106
BTBR T+ Itpr3tf/J 1 45.0 11.0117752131 66.6270483788 23.3729516212
BTBR T+ Itpr3tf/J 2 60.0 4.0209317883 67.8970814996 52.1029185004
BUB/BnJ 1 50.2857142857 5.8860414382 61.845857903 38.7255706685
BUB/BnJ 2 57.0 6.3576513835 69.4863822033 44.5136177967
C3H/HeJ 1 47.0 5.8860414382 58.5601436173 35.4398563827
C3H/HeJ 2 58.5 6.3576513835 70.9863822033 46.0136177967
C57BL/6J 1 53.9230769231 4.3191735916 62.4059032081 45.4402506381
C57BL/6J 2 61.5 4.9246155859 71.1719100656 51.8280899344
C57BR/cdJ 1 56.4666666667 4.0209317883 64.3637481662 48.5695851671
C57BR/cdJ 2 49.4 3.1146003704 55.5170530263 43.2829469737
C58/J 1 40.1428571429 5.8860414382 51.7030007601 28.5827135256
C58/J 2 52.3333333333 5.1910006174 62.5284217105 42.1382449562
CAST/EiJ 1 63.0 8.9910768114 80.6584110569 45.3415889431
CAST/EiJ 2 55.8 4.9246155859 65.4719100656 46.1280899344
CBA/J 1 58.4705882353 3.7770077379 65.8886046309 51.0525718397
CBA/J 2 58.9285714286 4.1620598153 67.1028273718 50.7543154853
CE/J 1 48.8888888889 5.1910006174 59.083977266 38.6938005117
CE/J 2 63.0 7.7865009261 78.2926325657 47.7073674343
DBA/2J 1 56.7272727273 4.6954367276 65.9490771413 47.5054683132
DBA/2J 2 50.7777777778 5.1910006174 60.9728661549 40.5826894006
FVB/NJ 1 65.5714285714 4.1620598153 73.7456845147 57.3971726282
FVB/NJ 2 65.2 6.964458151 78.8781463888 51.5218536112
I/LnJ 1 49.6666666667 5.1910006174 59.8617550438 39.4715782895
I/LnJ 2 68.6666666667 5.1910006174 78.8617550438 58.4715782895
KK/HlJ 1 59.45 3.4822290755 66.2890731944 52.6109268056
KK/HlJ 2 56.3333333333 6.3576513835 68.8197155366 43.84695113
LP/J 1 56.4666666667 4.0209317883 64.3637481662 48.5695851671
LP/J 2 58.0 4.6954367276 67.2218044141 48.7781955859
MA/MyJ 1 61.25 5.5058876065 72.0635241894 50.4364758106
MA/MyJ 2 65.0666666667 4.0209317883 72.9637481662 57.1695851671
NOD/ShiLtJ 1 54.1538461538 4.3191735916 62.6366724389 45.6710198688
NOD/ShiLtJ 2 59.7692307692 4.3191735916 68.2520570542 51.2864044842
NZB/BlNJ 1 54.0 5.1910006174 64.1950883772 43.8049116228
NZB/BlNJ 2 57.6666666667 6.3576513835 70.15304887 45.1802844634
PL/J 1 58.6363636364 4.6954367276 67.8581680504 49.4145592223
PL/J 2 70.3333333333 6.3576513835 82.8197155366 57.84695113
RIIIS/J 1 66.0 4.3191735916 74.482826285 57.517173715
RIIIS/J 2 50.1666666667 4.4955384057 58.9958721951 41.3374611382
SEA/GnJ 1 68.7857142857 4.1620598153 76.959970229 60.6114583425
SEA/GnJ 2 65.4444444444 5.1910006174 75.6395328216 55.2493560673
SJL/J 1 52.2105263158 3.5726916485 59.2272673615 45.19378527
SJL/J 2 58.04 3.1146003704 64.1570530263 51.9229469737
SM/J 1 56.0 5.5058876065 66.8135241894 45.1864758106
SM/J 2 49.25 7.7865009261 64.5426325657 33.9573674343
SWR/J 1 60.125 3.893250463 67.7713162829 52.4786837171
SWR/J 2 65.75 5.5058876065 76.5635241894 54.9364758106


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 58.225 4.4389885017 66.9431419183 49.5068580817
A/J both 66.5238095238 3.9240276255 74.2305719353 58.8170471123
AKR/J both 57.75 3.3339805123 64.2979140682 51.2020859318
ALR/LtJ both 62.5166666667 4.7149604572 71.7768155472 53.2565177861
ALS/LtJ both 64.75 4.1038463216 72.8099250546 56.6900749454
BALB/cJ both 60.5 3.6705917377 67.7090161263 53.2909838737
BPH/2J both 57.84375 3.3716538043 64.4656541463 51.2218458537
BPL/1J both 60.1212121212 3.4997719023 66.9947393029 53.2476849395
BPN/3J both 64.6125 3.6934616894 71.8664325492 57.3585674508
BTBR T+ Itpr3tf/J both 52.5 5.8614649574 64.0118755834 40.9881244166
BUB/BnJ both 53.6428571429 4.3320092026 62.1508924769 45.1348218089
C3H/HeJ both 52.75 4.3320092026 61.258035334 44.241964666
C57BL/6J both 57.7115384615 3.2751755366 64.1439599748 51.2791169483
C57BR/cdJ both 52.9333333333 2.5430605534 57.9278862147 47.938780452
C58/J both 46.2380952381 3.9240276255 53.9448576496 38.5313328266
CAST/EiJ both 59.4 5.1257024128 69.4668431667 49.3331568333
CBA/J both 58.6995798319 2.8101836843 64.2187606468 53.180399017
CE/J both 55.9444444444 4.6791047242 65.1341729199 46.754715969
DBA/2J both 53.7525252525 3.4997719023 60.6260524342 46.8789980708
FVB/NJ both 65.3857142857 4.0566741071 73.3529934458 57.4184351256
I/LnJ both 59.1666666667 3.6705917377 66.3756827929 51.9576505404
KK/HlJ both 57.8916666667 3.6244189344 65.009999735 50.7733335984
LP/J both 57.2333333333 3.0909148528 63.303868171 51.1627984957
MA/MyJ both 63.1583333333 3.4089107784 69.8534099125 56.4632567541
NOD/ShiLtJ both 56.9615384615 3.0541169357 62.9598024513 50.9632744718
NZB/BlNJ both 55.8333333333 4.1038463216 63.893258388 47.7734082787
PL/J both 64.4848484848 3.9517988681 72.2461534199 56.7235435498
RIIIS/J both 58.0833333333 3.1170950447 64.2052858823 51.9613807844
SEA/GnJ both 67.1150793651 3.3267562774 73.6488050871 60.581353643
SJL/J both 55.1252631579 2.3698555379 59.7796426179 50.4708836979
SM/J both 52.625 4.7682385376 61.9897866525 43.2602133475
SWR/J both 62.9375 3.3716538043 69.5594041463 56.3155958537




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA