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Project measure / variable:   Project1202   Ymaze.TotalArmEntries_14_5XFAD_HFD

ID, description, units MPD:130362   Ymaze.TotalArmEntries_14_5XFAD_HFD   Ymaze.TotalArmEntries    14 5XFAD HFD  
Data set, strains Project1202   F1 AD-BXD   41 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - Ymaze.TotalArmEntries 14 5XFAD HFD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested41 strains38 strains
Mean of the strain means27.203   None 19.321   None
Median of the strain means27.4   None 18.857   None
SD of the strain means± 6.2097 ± 4.6459
Coefficient of variation (CV)0.2283 0.2405
Min–max range of strain means12.0   –   41.0   None 12.167   –   34.143   None
Mean sample size per strain5.3   mice 5.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6240.2486 6240.2486 96.1897 < 0.0001
strain 35 6824.1669 194.9762 3.0054 < 0.0001
sex:strain 35 3427.4507 97.9272 1.5095 0.0364
Residuals 326 21149.0508 64.8744


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 17.8 2.8636   5 1.2806 0.1609 14.0, 22.0 -1.51
(B6.5XFAD x BXD113)F1 f 21.833 6.6458   6 2.7131 0.3044 11.0, 29.0 -0.86
(B6.5XFAD x BXD113)F1 m 16.2 7.5631   5 3.3823 0.4669 5.0, 23.0 -0.67
(B6.5XFAD x BXD124)F1 f 27.4 13.221   5 5.9127 0.4825 13.0, 49.0 0.03
(B6.5XFAD x BXD124)F1 m 28.5 3.5355   2   2.5 0.1241 26.0, 31.0 1.98
(B6.5XFAD x BXD125)F1 f 32.0 10.817   7 4.0883 0.338 18.0, 50.0 0.77
(B6.5XFAD x BXD125)F1 m 21.0 12.554   6 5.1251 0.5978 5.0, 33.0 0.36
(B6.5XFAD x BXD12)F1 f 24.75 13.326   4 6.663 0.5384 7.0, 38.0 -0.39
(B6.5XFAD x BXD12)F1 m 34.143 11.187   7 4.2282 0.3276 22.0, 51.0 3.19
(B6.5XFAD x BXD14)F1-ADtg f 21.333 4.5019   6 1.8379 0.211 17.0, 27.0 -0.95
(B6.5XFAD x BXD14)F1-ADtg m 19.0 7.1063   9 2.3688 0.374 12.0, 32.0 -0.07
(B6.5XFAD x BXD152)F1 f 15.167 5.7067   6 2.3298 0.3763 8.0, 23.0 -1.94
(B6.5XFAD x BXD152)F1 m 12.167 5.1153   6 2.0883 0.4204 7.0, 19.0 -1.54
(B6.5XFAD x BXD154)F1 f 28.571 14.152   7 5.349 0.4953 20.0, 59.0 0.22
(B6.5XFAD x BXD154)F1 m 18.714 3.7289   7 1.4094 0.1993 13.0, 24.0 -0.13
(B6.5XFAD x BXD161)F1 f 32.8 9.8843   5 4.4204 0.3014 18.0, 43.0 0.9
(B6.5XFAD x BXD161)F1 m 19.0 0.8165   4 0.40825 0.043 18.0, 20.0 -0.07
(B6.5XFAD x BXD169)F1 f 27.0 9.1433   6 3.7327 0.3386 14.0, 39.0 -0.03
(B6.5XFAD x BXD169)F1 m 15.0 7.3824   5 3.3015 0.4922 7.0, 22.0 -0.93
(B6.5XFAD x BXD16)F1-ADtg f 27.833 9.6626   6 3.9448 0.3472 17.0, 41.0 0.1
(B6.5XFAD x BXD16)F1-ADtg m 14.0 9.0   3 5.1962 0.6429 5.0, 23.0 -1.15
(B6.5XFAD x BXD19)F1 f 22.0 8.6487   6 3.5308 0.3931 13.0, 32.0 -0.84
(B6.5XFAD x BXD19)F1 m 17.0 4.6904   5 2.0976 0.2759 12.0, 24.0 -0.5
(B6.5XFAD x BXD28)F1 f 32.875 6.9783   8 2.4672 0.2123 19.0, 41.0 0.91
(B6.5XFAD x BXD28)F1 m 16.5 6.245   4 3.1225 0.3785 8.0, 23.0 -0.61
(B6.5XFAD x BXD31)F1 f 38.0 9.8995   2   7.0 0.2605 31.0, 45.0 1.74
(B6.5XFAD x BXD31)F1 m 17.0 10.198   5 4.5607 0.5999 7.0, 34.0 -0.5
(B6.5XFAD x BXD32)F1-ADtg f 41.0 7.0711   2   5.0 0.1725 36.0, 46.0 2.22
(B6.5XFAD x BXD32)F1-ADtg m 18.0 5.5678   5 2.49 0.3093 9.0, 23.0 -0.28
(B6.5XFAD x BXD34)F1-ADtg f 22.2 9.2574   5 4.14 0.417 9.0, 30.0 -0.81
(B6.5XFAD x BXD34)F1-ADtg m 16.0 7.0356   5 3.1464 0.4397 8.0, 26.0 -0.71
(B6.5XFAD x BXD38)F1 f 29.4 13.939   5 6.2338 0.4741 13.0, 43.0 0.35
(B6.5XFAD x BXD38)F1 m 22.143 10.107   7 3.8199 0.4564 11.0, 35.0 0.61
(B6.5XFAD x BXD39)F1 f 27.4 8.4735   5 3.7895 0.3093 18.0, 38.0 0.03
(B6.5XFAD x BXD39)F1 m 17.333 3.7859   3 2.1858 0.2184 13.0, 20.0 -0.43
(B6.5XFAD x BXD42)F1-ADtg f 24.333 13.013   3 7.513 0.5348 11.0, 37.0 -0.46
(B6.5XFAD x BXD42)F1-ADtg m 26.0 4.2426   2   3.0 0.1632 23.0, 29.0 1.44
(B6.5XFAD x BXD48a)F1 f 28.0 7.0711   2   5.0 0.2525 23.0, 33.0 0.13
(B6.5XFAD x BXD48a)F1 m 20.5 8.5829   4 4.2915 0.4187 10.0, 31.0 0.25
(B6.5XFAD x BXD49)F1 f 29.0 0.0   1   0.0 0.0 29.0, 29.0 0.29
(B6.5XFAD x BXD49)F1 m 19.6 8.4439   5 3.7762 0.4308 10.0, 33.0 0.06
(B6.5XFAD x BXD50)F1 f 22.0 7.4027   6 3.0221 0.3365 8.0, 28.0 -0.84
(B6.5XFAD x BXD50)F1 m 13.0 2.9155   5 1.3038 0.2243 9.0, 17.0 -1.36
(B6.5XFAD x BXD55)F1-ADtg f 33.889 9.0477   9 3.0159 0.267 16.0, 46.0 1.08
(B6.5XFAD x BXD55)F1-ADtg m 27.75 5.0356   8 1.7803 0.1815 22.0, 35.0 1.81
(B6.5XFAD x BXD60)F1-ADtg f 28.667 6.4083   6 2.6162 0.2235 19.0, 38.0 0.24
(B6.5XFAD x BXD60)F1-ADtg m 23.571 6.9488   7 2.6264 0.2948 9.0, 30.0 0.91
(B6.5XFAD x BXD61)F1-ADtg f 23.167 7.679   6 3.1349 0.3315 14.0, 36.0 -0.65
(B6.5XFAD x BXD61)F1-ADtg m 13.0 4.3205   7 1.633 0.3323 6.0, 20.0 -1.36
(B6.5XFAD x BXD62)F1-ADtg f 31.625 7.3473   8 2.5976 0.2323 23.0, 43.0 0.71
(B6.5XFAD x BXD62)F1-ADtg m 15.5 5.8907   6 2.4049 0.38 9.0, 23.0 -0.82
(B6.5XFAD x BXD65)F1-ADtg f 37.286 6.9454   7 2.6251 0.1863 31.0, 51.0 1.62
(B6.5XFAD x BXD65)F1-ADtg m 23.667 7.3824   9 2.4608 0.3119 14.0, 38.0 0.94
(B6.5XFAD x BXD66)F1-ADtg f 34.5 5.7184   6 2.3345 0.1658 28.0, 42.0 1.18
(B6.5XFAD x BXD66)F1-ADtg m 16.0 4.6904   4 2.3452 0.2932 9.0, 19.0 -0.71
(B6.5XFAD x BXD68)F1-ADtg f 30.75 3.196   8 1.1299 0.1039 26.0, 36.0 0.57
(B6.5XFAD x BXD68)F1-ADtg m 19.667 4.6098   9 1.5366 0.2344 15.0, 28.0 0.07
(B6.5XFAD x BXD73)F1 f 19.833 4.6224   6 1.8871 0.2331 13.0, 25.0 -1.19
(B6.5XFAD x BXD73)F1 m 19.286 14.454   7 5.4629 0.7494 6.0, 43.0 -0.01
(B6.5XFAD x BXD74)F1 f 19.667 8.4301   6 3.4416 0.4286 9.0, 29.0 -1.21
(B6.5XFAD x BXD74)F1 m 17.8 7.7266   5 3.4554 0.4341 5.0, 23.0 -0.33
(B6.5XFAD x BXD75)F1-ADtg f 28.667 6.0553   6 2.4721 0.2112 23.0, 40.0 0.24
(B6.5XFAD x BXD75)F1-ADtg m 20.8 3.7683   5 1.6852 0.1812 15.0, 25.0 0.32
(B6.5XFAD x BXD77)F1-ADtg f 27.0 7.4833   6 3.0551 0.2772 18.0, 37.0 -0.03
(B6.5XFAD x BXD77)F1-ADtg m 17.4 3.7815   5 1.6912 0.2173 13.0, 21.0 -0.41
(B6.5XFAD x BXD78)F1 f 28.667 10.408   3 6.0093 0.3631 17.0, 37.0 0.24
(B6.5XFAD x BXD83)F1 f 22.4 8.1425   5 3.6414 0.3635 15.0, 35.0 -0.77
(B6.5XFAD x BXD83)F1 m 17.25 2.5   4 1.25 0.1449 14.0, 20.0 -0.45
(B6.5XFAD x BXD87)F1-ADtg f 22.8 10.895   5 4.8724 0.4778 4.0, 30.0 -0.71
(B6.5XFAD x BXD87)F1-ADtg m 21.2 5.4498   5 2.4372 0.2571 14.0, 28.0 0.4
(B6.5XFAD x BXD89)F1-ADtg f 12.0 0.0   1   0.0 0.0 12.0, 12.0 -2.45
(B6.5XFAD x BXD99)F1-ADtg f 35.0 10.431   6 4.2583 0.298 17.0, 46.0 1.26
(B6.5XFAD x BXD99)F1-ADtg m 23.75 6.6521   4 3.326 0.2801 16.0, 32.0 0.95
(B6.5XFAD x D2)F1-ADtg f 34.0 0.0   1   0.0 0.0 34.0, 34.0 1.09
(B6.5XFAD x D2)F1-ADtg m 13.5 7.7782   2   5.5 0.5762 8.0, 19.0 -1.25
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 26.0 2.9439   4 1.472 0.1132 22.0, 29.0 -0.19
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 21.667 5.8595   3 3.383 0.2704 15.0, 26.0 0.5
C57BL/6J f 26.7 9.7985   10 3.0986 0.367 10.0, 41.0 -0.08
C57BL/6J m 21.6 6.229   5 2.7857 0.2884 14.0, 31.0 0.49


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 41.0 5.6953660522 52.2043086619 29.7956913381
129S1/SvImJ 2 18.0 3.6020657667 25.0862269958 10.9137730042
A/J 1 22.2 3.6020657667 29.2862269958 15.1137730042
A/J 2 16.0 3.6020657667 23.0862269958 8.9137730042
AKR/J 1 22.8 3.6020657667 29.8862269958 15.7137730042
AKR/J 2 21.2 3.6020657667 28.2862269958 14.1137730042
ALR/LtJ 1 32.0 3.0443012085 37.9889548955 26.0110451045
ALR/LtJ 2 21.0 3.2882211234 27.468810622 14.531189378
ALS/LtJ 1 22.0 3.2882211234 28.468810622 15.531189378
ALS/LtJ 2 13.0 3.6020657667 20.0862269958 5.9137730042
BALB/cJ 1 24.3333333333 4.6502469088 33.4816130474 15.1850536192
BALB/cJ 2 26.0 5.6953660522 37.2043086619 14.7956913381
BPH/2J 1 15.1666666667 3.2882211234 21.6354772887 8.6978560446
BPH/2J 2 12.1666666667 3.2882211234 18.6354772887 5.6978560446
BPL/1J 1 26.0 4.0272319569 33.9226426333 18.0773573667
BPL/1J 2 21.6666666667 4.6502469088 30.8149463808 12.5183869526
BPN/3J 1 22.0 3.2882211234 28.468810622 15.531189378
BPN/3J 2 17.0 3.6020657667 24.0862269958 9.9137730042
BTBR T+ Itpr3tf/J 1 21.3333333333 3.2882211234 27.8021439554 14.8645227113
BTBR T+ Itpr3tf/J 2 19.0 2.6848213046 24.2817617556 13.7182382444
BUB/BnJ 1 28.5714285714 3.0443012085 34.5603834669 22.5824736759
BUB/BnJ 2 18.7142857143 3.0443012085 24.7032406098 12.7253308188
C3H/HeJ 1 33.8888888889 2.6848213046 39.1706506445 28.6071271333
C3H/HeJ 2 27.75 2.8476830261 33.352154331 22.147845669
C57BL/6J 1 28.6666666667 3.2882211234 35.1354772887 22.1978560446
C57BL/6J 2 23.5714285714 3.0443012085 29.5603834669 17.5824736759
C57BLKS/J 1 22.4 3.6020657667 29.4862269958 15.3137730042
C57BLKS/J 2 17.25 4.0272319569 25.1726426333 9.3273573667
C57BR/cdJ 1 28.0 5.6953660522 39.2043086619 16.7956913381
C57BR/cdJ 2 20.5 4.0272319569 28.4226426333 12.5773573667
C58/J 1 32.875 2.8476830261 38.477154331 27.272845669
C58/J 2 16.5 4.0272319569 24.4226426333 8.5773573667
CAST/EiJ 1 27.8333333333 3.2882211234 34.3021439554 21.3645227113
CAST/EiJ 2 14.0 4.6502469088 23.1482797141 4.8517202859
CBA/J 1 35.0 3.2882211234 41.468810622 28.531189378
CBA/J 2 23.75 4.0272319569 31.6726426333 15.8273573667
CE/J 1 32.8 3.6020657667 39.8862269958 25.7137730042
CE/J 2 19.0 4.0272319569 26.9226426333 11.0773573667
DBA/2J 1 23.1666666667 3.2882211234 29.6354772887 16.6978560446
DBA/2J 2 13.0 3.0443012085 18.9889548955 7.0110451045
FVB/NJ 1 31.625 2.8476830261 37.227154331 26.022845669
FVB/NJ 2 15.5 3.2882211234 21.968810622 9.031189378
I/LnJ 1 29.4 3.6020657667 36.4862269958 22.3137730042
I/LnJ 2 22.1428571429 3.0443012085 28.1318120384 16.1539022474
KK/HlJ 1 24.75 4.0272319569 32.6726426333 16.8273573667
KK/HlJ 2 34.1428571429 3.0443012085 40.1318120384 28.1539022474
LP/J 1 37.2857142857 3.0443012085 43.2746691812 31.2967593902
LP/J 2 23.6666666667 2.6848213046 28.9484284222 18.3849049111
MA/MyJ 1 27.4 3.6020657667 34.4862269958 20.3137730042
MA/MyJ 2 28.5 5.6953660522 39.7043086619 17.2956913381
NOD/ShiLtJ 1 28.6666666667 3.2882211234 35.1354772887 22.1978560446
NOD/ShiLtJ 2 20.8 3.6020657667 27.8862269958 13.7137730042
NON/ShiLtJ 1 19.6666666667 3.2882211234 26.1354772887 13.1978560446
NON/ShiLtJ 2 17.8 3.6020657667 24.8862269958 10.7137730042
NZB/BlNJ 1 34.5 3.2882211234 40.968810622 28.031189378
NZB/BlNJ 2 16.0 4.0272319569 23.9226426333 8.0773573667
NZW/LacJ 1 26.7 2.5470451299 31.7107191618 21.6892808382
NZW/LacJ 2 21.6 3.6020657667 28.6862269958 14.5137730042
PL/J 1 27.0 3.2882211234 33.468810622 20.531189378
PL/J 2 17.4 3.6020657667 24.4862269958 10.3137730042
RBF/DnJ 1 19.8333333333 3.2882211234 26.3021439554 13.3645227113
RBF/DnJ 2 19.2857142857 3.0443012085 25.2746691812 13.2967593902
RIIIS/J 1 27.0 3.2882211234 33.468810622 20.531189378
RIIIS/J 2 15.0 3.6020657667 22.0862269958 7.9137730042
SEA/GnJ 1 38.0 5.6953660522 49.2043086619 26.7956913381
SEA/GnJ 2 17.0 3.6020657667 24.0862269958 9.9137730042
SJL/J 1 21.8333333333 3.2882211234 28.3021439554 15.3645227113
SJL/J 2 16.2 3.6020657667 23.2862269958 9.1137730042
SM/J 1 27.4 3.6020657667 34.4862269958 20.3137730042
SM/J 2 17.3333333333 4.6502469088 26.4816130474 8.1850536192
SWR/J 1 30.75 2.8476830261 36.352154331 25.147845669
SWR/J 2 19.6666666667 2.6848213046 24.9484284222 14.3849049111


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 29.5 3.3694239959 36.1285583958 22.8714416042
A/J both 19.1 2.5470451299 24.1107191618 14.0892808382
AKR/J both 22.0 2.5470451299 27.0107191618 16.9892808382
ALR/LtJ both 26.5 2.2405450232 30.9077514564 22.0922485436
ALS/LtJ both 17.5 2.438610052 22.2973983548 12.7026016452
BALB/cJ both 25.1666666667 3.6763429785 32.3990168089 17.9343165244
BPH/2J both 13.6666666667 2.3251234544 18.2408065237 9.0925268096
BPL/1J both 23.8333333333 3.0758492139 29.8843515952 17.7823150714
BPN/3J both 19.5 2.438610052 24.2973983548 14.7026016452
BTBR T+ Itpr3tf/J both 20.1666666667 2.1225376083 24.3422659682 15.9910673652
BUB/BnJ both 23.6428571429 2.1526460285 27.8776877617 19.408026524
C3H/HeJ both 30.8194444444 1.9568829842 34.669156784 26.9697321049
C57BL/6J both 26.119047619 2.2405450232 30.5267990754 21.7112961627
C57BLKS/J both 19.825 2.701549325 25.1396702469 14.5103297531
C57BR/cdJ both 24.25 3.4876851816 31.1112097856 17.3887902144
C58/J both 24.6875 2.4661658425 29.5391079665 19.8358920335
CAST/EiJ both 20.9166666667 2.8476830261 26.5188209976 15.3145123357
CBA/J both 29.375 2.59956705 34.4890438295 24.2609561705
CE/J both 25.9 2.701549325 31.2146702469 20.5853297531
DBA/2J both 18.0833333333 2.2405450232 22.4910847897 13.675581877
FVB/NJ both 23.5625 2.1749538371 27.8412160461 19.2837839539
I/LnJ both 25.7714285714 2.3581055763 30.4104530857 21.1324040571
KK/HlJ both 29.4464285714 2.5242012144 34.4122076401 24.4806495027
LP/J both 30.4761904762 2.029534139 34.4688270732 26.4835538792
MA/MyJ both 27.95 3.3694239959 34.5785583958 21.3214416042
NOD/ShiLtJ both 24.7333333333 2.438610052 29.5307316882 19.9359349785
NON/ShiLtJ both 18.7333333333 2.438610052 23.5307316882 13.9359349785
NZB/BlNJ both 25.25 2.59956705 30.3640438295 20.1359561705
NZW/LacJ both 24.15 2.2058057871 28.4894100853 19.8105899147
PL/J both 22.2 2.438610052 26.9973983548 17.4026016452
RBF/DnJ both 19.5595238095 2.2405450232 23.9672752659 15.1517723532
RIIIS/J both 21.0 2.438610052 25.7973983548 16.2026016452
SEA/GnJ both 27.5 3.3694239959 34.1285583958 20.8714416042
SJL/J both 19.0166666667 2.438610052 23.8140650215 14.2192683118
SM/J both 22.3666666667 2.9410743828 28.1525467804 16.5807865529
SWR/J both 25.2083333333 1.9568829842 29.0580456729 21.3586209937




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA