Project measure / variable:   Project1202   Ymaze.Distance_2_5XFAD_HFD

ID, description, units MPD:130321   Ymaze.Distance_2_5XFAD_HFD   Ymaze.Distance    2 5XFAD HFD  
Data set, strains Project1202   F1 AD-BXD   41 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - Ymaze.Distance 2 5XFAD HFD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested41 strains39 strains
Mean of the strain means13.307   None 12.448   None
Median of the strain means13.552   None 12.324   None
SD of the strain means± 2.3233 ± 2.0041
Coefficient of variation (CV)0.1746 0.161
Min–max range of strain means7.89   –   18.398   None 8.145   –   17.296   None
Mean sample size per strain14.9   mice 16.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 446.9809 446.9809 33.1218 < 0.0001
strain 36 4439.9872 123.333 9.1391 < 0.0001
sex:strain 36 1032.4375 28.6788 2.1251 0.0001
Residuals 1146 15465.3253 13.495


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 10.584 2.1486   8 0.75963 0.203 7.24, 12.65 -1.17
(B6.5XFAD x BXD113)F1 f 13.552 3.2776   14 0.87596 0.2418 7.32, 18.98 0.11
(B6.5XFAD x BXD113)F1 m 11.093 4.031   12 1.1637 0.3634 4.17, 15.92 -0.68
(B6.5XFAD x BXD124)F1 f 12.666 3.4483   29 0.64033 0.2723 6.32, 19.68 -0.28
(B6.5XFAD x BXD124)F1 m 12.324 3.3586   23 0.70032 0.2725 4.71, 19.6 -0.06
(B6.5XFAD x BXD125)F1 f 18.398 3.3926   19 0.77832 0.1844 13.67, 24.18 2.19
(B6.5XFAD x BXD125)F1 m 14.428 3.185   15 0.82236 0.2208 8.9, 20.31 0.99
(B6.5XFAD x BXD12)F1 f 13.253 3.0295   13 0.84022 0.2286 8.53, 18.35 -0.02
(B6.5XFAD x BXD12)F1 m 14.684 4.6415   20 1.0379 0.3161 7.22, 22.73 1.12
(B6.5XFAD x BXD14)F1-ADtg f 14.481 3.6302   19 0.83282 0.2507 8.27, 22.35 0.51
(B6.5XFAD x BXD14)F1-ADtg m 14.367 3.1123   22 0.66354 0.2166 10.06, 21.23 0.96
(B6.5XFAD x BXD152)F1 f 9.8619 2.7809   16 0.69522 0.282 4.86, 17.05 -1.48
(B6.5XFAD x BXD152)F1 m 8.1457 2.2929   21 0.50035 0.2815 4.34, 13.74 -2.15
(B6.5XFAD x BXD154)F1 f 14.806 2.3712   19 0.54399 0.1602 10.53, 20.06 0.65
(B6.5XFAD x BXD154)F1 m 13.852 4.5457   22 0.96915 0.3282 2.3, 22.65 0.7
(B6.5XFAD x BXD161)F1 f 13.181 3.515   16 0.87875 0.2667 6.92, 21.39 -0.05
(B6.5XFAD x BXD161)F1 m 12.254 3.0087   19 0.69024 0.2455 4.06, 18.47 -0.1
(B6.5XFAD x BXD169)F1 f 13.915 4.1914   20 0.93724 0.3012 6.08, 24.57 0.26
(B6.5XFAD x BXD169)F1 m 11.882 3.2043   20 0.7165 0.2697 5.76, 18.49 -0.28
(B6.5XFAD x BXD16)F1-ADtg f 14.303 7.4466   12 2.1496 0.5206 1.76, 27.52 0.43
(B6.5XFAD x BXD16)F1-ADtg m 13.424 3.9479   13 1.0949 0.2941 7.9, 19.5 0.49
(B6.5XFAD x BXD19)F1 f 12.599 3.3587   19 0.77055 0.2666 7.5, 21.33 -0.3
(B6.5XFAD x BXD19)F1 m 10.452 3.4261   20 0.76609 0.3278 5.0, 18.55 -1.0
(B6.5XFAD x BXD28)F1 f 9.9129 4.7181   24 0.96308 0.476 1.45, 15.8 -1.46
(B6.5XFAD x BXD28)F1 m 8.145 2.8152   28 0.53201 0.3456 2.88, 13.04 -2.15
(B6.5XFAD x BXD31)F1 f 8.985 0.65761   2   0.465 0.0732 8.52, 9.45 -1.86
(B6.5XFAD x BXD31)F1 m 10.59 2.0144   7 0.76136 0.1902 7.74, 13.15 -0.93
(B6.5XFAD x BXD32)F1-ADtg f 15.064 1.7388   5 0.77763 0.1154 13.23, 17.18 0.76
(B6.5XFAD x BXD32)F1-ADtg m 13.636 2.7797   8 0.98279 0.2038 9.65, 18.23 0.59
(B6.5XFAD x BXD34)F1-ADtg f 13.852 3.0552   5 1.3663 0.2206 11.04, 18.97 0.23
(B6.5XFAD x BXD34)F1-ADtg m 12.953 2.4192   6 0.98764 0.1868 9.75, 15.88 0.25
(B6.5XFAD x BXD38)F1 f 13.122 3.1987   21 0.69801 0.2438 2.14, 17.19 -0.08
(B6.5XFAD x BXD38)F1 m 10.238 4.607   18 1.0859 0.45 2.12, 19.07 -1.1
(B6.5XFAD x BXD39)F1 f 16.544 3.2942   14 0.8804 0.1991 11.98, 23.84 1.39
(B6.5XFAD x BXD39)F1 m 11.317 2.4883   20 0.55639 0.2199 3.06, 14.98 -0.56
(B6.5XFAD x BXD42)F1-ADtg f 15.848 3.129   6 1.2774 0.1974 11.61, 20.18 1.09
(B6.5XFAD x BXD42)F1-ADtg m 12.652 5.3246   4 2.6623 0.4208 5.47, 17.36 0.1
(B6.5XFAD x BXD48a)F1 f 13.626 2.8605   5 1.2793 0.2099 11.63, 18.12 0.14
(B6.5XFAD x BXD48a)F1 m 11.686 4.4577   5 1.9935 0.3815 6.89, 16.78 -0.38
(B6.5XFAD x BXD49)F1 f 9.43 0.0   1   0.0 0.0 9.43, 9.43 -1.67
(B6.5XFAD x BXD49)F1 m 12.692 3.1858   6 1.3006 0.251 7.96, 17.32 0.12
(B6.5XFAD x BXD50)F1 f 12.566 2.7904   17 0.67676 0.222 8.03, 17.04 -0.32
(B6.5XFAD x BXD50)F1 m 10.492 2.5211   19 0.57837 0.2403 4.57, 13.86 -0.98
(B6.5XFAD x BXD55)F1-ADtg f 14.095 7.5902   20 1.6972 0.5385 2.61, 25.14 0.34
(B6.5XFAD x BXD55)F1-ADtg m 17.296 4.5665   21 0.9965 0.264 8.11, 26.5 2.42
(B6.5XFAD x BXD60)F1-ADtg f 11.282 4.4911   15 1.1596 0.3981 0.98, 16.95 -0.87
(B6.5XFAD x BXD60)F1-ADtg m 13.788 3.1753   16 0.79382 0.2303 8.94, 19.51 0.67
(B6.5XFAD x BXD61)F1-ADtg f 11.768 1.9469   13 0.53997 0.1654 8.53, 14.97 -0.66
(B6.5XFAD x BXD61)F1-ADtg m 11.482 3.0304   24 0.61858 0.2639 4.14, 15.84 -0.48
(B6.5XFAD x BXD62)F1-ADtg f 11.854 3.4331   17 0.83265 0.2896 6.28, 19.07 -0.63
(B6.5XFAD x BXD62)F1-ADtg m 9.9279 2.2364   14 0.59771 0.2253 5.13, 12.8 -1.26
(B6.5XFAD x BXD65)F1-ADtg f 16.882 3.6197   21 0.78989 0.2144 11.08, 22.0 1.54
(B6.5XFAD x BXD65)F1-ADtg m 14.537 4.0674   23 0.84811 0.2798 1.36, 20.05 1.04
(B6.5XFAD x BXD66)F1-ADtg f 15.146 4.528   17 1.0982 0.299 8.36, 26.41 0.79
(B6.5XFAD x BXD66)F1-ADtg m 15.815 4.1309   14 1.104 0.2612 9.69, 22.72 1.68
(B6.5XFAD x BXD68)F1-ADtg f 17.111 2.7489   18 0.64791 0.1607 13.16, 22.99 1.64
(B6.5XFAD x BXD68)F1-ADtg m 13.342 4.5982   23 0.9588 0.3446 3.15, 21.79 0.45
(B6.5XFAD x BXD73)F1 f 14.098 2.9878   19 0.68544 0.2119 9.67, 21.38 0.34
(B6.5XFAD x BXD73)F1 m 10.551 4.557   19 1.0454 0.4319 2.45, 20.35 -0.95
(B6.5XFAD x BXD74)F1 f 12.947 3.6468   23 0.76042 0.2817 4.38, 17.81 -0.16
(B6.5XFAD x BXD74)F1 m 13.116 2.5151   14 0.67218 0.1917 8.09, 17.63 0.33
(B6.5XFAD x BXD75)F1-ADtg f 13.667 3.8179   22 0.81399 0.2793 3.29, 20.36 0.15
(B6.5XFAD x BXD75)F1-ADtg m 12.19 2.8169   23 0.58736 0.2311 4.7, 17.84 -0.13
(B6.5XFAD x BXD77)F1-ADtg f 11.607 4.1625   18 0.9811 0.3586 6.0, 22.85 -0.73
(B6.5XFAD x BXD77)F1-ADtg m 14.092 3.9887   17 0.9674 0.2831 8.07, 23.92 0.82
(B6.5XFAD x BXD78)F1 f 7.89 0.08485   2   0.06 0.0108 7.83, 7.95 -2.33
(B6.5XFAD x BXD83)F1 f 12.179 3.8147   19 0.87515 0.3132 5.74, 20.09 -0.49
(B6.5XFAD x BXD83)F1 m 11.641 2.8795   17 0.69837 0.2474 4.73, 16.3 -0.4
(B6.5XFAD x BXD87)F1-ADtg f 11.219 2.6412   19 0.60593 0.2354 6.59, 17.62 -0.9
(B6.5XFAD x BXD87)F1-ADtg m 10.894 2.9445   21 0.64254 0.2703 4.74, 16.93 -0.78
(B6.5XFAD x BXD89)F1-ADtg f 12.88 0.0   1   0.0 0.0 12.88, 12.88 -0.18
(B6.5XFAD x BXD89)F1-ADtg m 11.06 2.9557   2   2.09 0.2672 8.97, 13.15 -0.69
(B6.5XFAD x BXD99)F1-ADtg f 16.549 2.6527   9 0.88422 0.1603 13.8, 22.78 1.4
(B6.5XFAD x BXD99)F1-ADtg m 13.653 3.8177   19 0.87583 0.2796 2.29, 21.01 0.6
(B6.5XFAD x D2)F1-ADtg f 13.6 3.6283   14 0.9697 0.2668 7.04, 20.11 0.13
(B6.5XFAD x D2)F1-ADtg m 12.676 1.7891   8 0.63255 0.1411 9.13, 14.86 0.11
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 14.045 2.2445   10 0.70976 0.1598 10.19, 17.24 0.32
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 11.744 3.0793   7 1.1639 0.2622 8.64, 16.91 -0.35
C57BL/6J f 16.236 4.0848   28 0.77196 0.2516 4.27, 22.92 1.26
C57BL/6J m 16.347 3.7716   21 0.82303 0.2307 10.41, 23.34 1.95


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 15.064 1.6428662893 18.2873630987 11.8406369013
129S1/SvImJ 2 13.63625 1.2987998413 16.1845422794 11.0879577206
A/J 1 13.852 1.6428662893 17.0753630987 10.6286369013
A/J 2 12.9533333333 1.499724876 15.8958478003 10.0108188664
AKR/J 1 11.2189473684 0.8427726241 12.8724977485 9.5653969883
AKR/J 2 10.8942857143 0.8016366658 12.4671258559 9.3214455727
ALR/LtJ 1 12.6655172414 0.6821630967 14.0039459177 11.327088565
ALR/LtJ 2 12.3243478261 0.765990357 13.8272486202 10.821447032
ALS/LtJ 1 18.3978947368 0.8427726241 20.0514451169 16.7443443568
ALS/LtJ 2 14.428 0.9485092944 16.2890095527 12.5669904473
BALB/cJ 1 15.8483333333 1.499724876 18.7908478003 12.9058188664
BALB/cJ 2 12.6525 1.8367803504 16.2563295024 9.0486704976
BPH/2J 1 12.5664705882 0.8909693407 14.31458467 10.8183565064
BPH/2J 2 10.4915789474 0.8427726241 12.1451293275 8.8380285673
BPL/1J 1 13.2530769231 1.0188624208 15.2521218552 11.2540319909
BPL/1J 2 14.684 0.8214331447 16.2956815493 13.0723184507
BPN/3J 1 13.9145 0.8214331447 15.5261815493 12.3028184507
BPN/3J 2 11.882 0.8214331447 13.4936815493 10.2703184507
BTBR T+ Itpr3tf/J 1 14.4805263158 0.8427726241 16.1340766959 12.8269759357
BTBR T+ Itpr3tf/J 2 14.3668181818 0.783205773 15.9034962449 12.8301401187
BUB/BnJ 1 9.861875 0.9183901752 11.6637897512 8.0599602488
BUB/BnJ 2 8.1457142857 0.8016366658 9.7185544273 6.5728741441
C3H/HeJ 1 14.095 0.8214331447 15.7066815493 12.4833184507
C3H/HeJ 2 17.2961904762 0.8016366658 18.8690306178 15.7233503346
C57BL/6J 1 11.282 0.9485092944 13.1430095527 9.4209904473
C57BL/6J 2 13.788125 0.9183901752 15.5900397512 11.9862102488
C57BLKS/J 1 12.9473913043 0.765990357 14.4502920985 11.4444905102
C57BLKS/J 2 13.1164285714 0.9818003952 15.0427564683 11.1901006745
C57BR/cdJ 1 16.5442857143 0.9818003952 18.4706136112 14.6179578174
C57BR/cdJ 2 11.317 0.8214331447 12.9286815493 9.7053184507
C57L/J 1 16.2357142857 0.6942377172 17.5978338044 14.873594767
C57L/J 2 16.3466666667 0.8016366658 17.9195068082 14.7738265251
C58/J 1 12.5989473684 0.8427726241 14.2524977485 10.9453969883
C58/J 2 10.452 0.8214331447 12.0636815493 8.8403184507
CAST/EiJ 1 14.3033333333 1.0604656298 16.3840052667 12.2226614
CAST/EiJ 2 13.4238461538 1.0188624208 15.422891086 11.4248012217
CBA/J 1 16.5488888889 1.2245202336 18.9514418905 14.1463358873
CBA/J 2 13.6531578947 0.8427726241 15.3067082748 11.9996075147
CE/J 1 14.8057894737 0.8427726241 16.4593398538 13.1522390936
CE/J 2 13.8518181818 0.783205773 15.3884962449 12.3151401187
DBA/2J 1 11.7676923077 1.0188624208 13.7667372398 9.7686473755
DBA/2J 2 11.4816666667 0.749862438 12.9529239002 10.0104094332
FVB/NJ 1 11.8535294118 0.8909693407 13.6016434936 10.10541533
FVB/NJ 2 9.9278571429 0.9818003952 11.8541850398 8.0015292459
I/LnJ 1 8.985 2.5975996827 14.0815845588 3.8884154412
I/LnJ 2 10.59 1.3884754344 13.3142390374 7.8657609626
KK/HlJ 1 13.5521428571 0.9818003952 15.4784707541 11.6258149602
KK/HlJ 2 11.0925 1.0604656298 13.1731719333 9.0118280667
LP/J 1 16.8819047619 0.8016366658 18.4547449035 15.3090646203
LP/J 2 14.5365217391 0.765990357 16.0394225332 13.033620945
MA/MyJ 1 14.045 1.1616818938 16.3242619053 11.7657380947
MA/MyJ 2 11.7442857143 1.3884754344 14.4685247517 9.0200466769
NOD/ShiLtJ 1 13.6672727273 0.783205773 15.2039507904 12.1305946642
NOD/ShiLtJ 2 12.1895652174 0.765990357 13.6924660115 10.6866644233
NON/ShiLtJ 1 14.0984210526 0.8427726241 15.7519714327 12.4448706725
NON/ShiLtJ 2 10.5510526316 0.8427726241 12.2046030117 8.8975022515
NZB/BlNJ 1 15.1458823529 0.8909693407 16.8939964347 13.3977682712
NZB/BlNJ 2 15.815 0.9818003952 17.7413278969 13.8886721031
NZW/LacJ 1 12.1794736842 0.8427726241 13.8330240643 10.5259233041
NZW/LacJ 2 11.6411764706 0.8909693407 13.3892905524 9.8930623888
PL/J 1 11.6066666667 0.8658665609 13.3055281863 9.9078051471
PL/J 2 14.0917647059 0.8909693407 15.8398787877 12.3436506241
RBF/DnJ 1 13.626 1.6428662893 16.8493630987 10.4026369013
RBF/DnJ 2 11.686 1.6428662893 14.9093630987 8.4626369013
RIIIS/J 1 13.18125 0.9183901752 14.9831647512 11.3793352488
RIIIS/J 2 12.2542105263 0.8427726241 13.9077609064 10.6006601462
SEA/GnJ 1 9.9129166667 0.749862438 11.3841739002 8.4416594332
SEA/GnJ 2 8.145 0.6942377172 9.5071195187 6.7828804813
SJL/J 1 13.6 0.9818003952 15.5263278969 11.6736721031
SJL/J 2 12.67625 1.2987998413 15.2245422794 10.1279577206
SM/J 1 13.1223809524 0.8016366658 14.695221094 11.5495408108
SM/J 2 10.2377777778 0.8658665609 11.9366392974 8.5389162582
SWR/J 1 17.1105555556 0.8658665609 18.8094170752 15.411694036
SWR/J 2 13.3417391304 0.765990357 14.8446399246 11.8388383363


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 14.350125 1.0471259084 16.4046239175 12.2956260825
A/J both 13.4026666667 1.1122257357 15.5848938005 11.2204395328
AKR/J both 11.0566165414 0.5815683623 12.1976747093 9.9155583734
ALR/LtJ both 12.4949325337 0.5128566363 13.5011758093 11.4886892581
ALS/LtJ both 16.4129473684 0.6344161839 17.6576948744 15.1681998624
BALB/cJ both 14.2504166667 1.185636618 16.5766786076 11.9241547258
BPH/2J both 11.5290247678 0.6132071555 12.7321593927 10.3258901429
BPL/1J both 13.9685384615 0.654376238 15.252448316 12.6846286071
BPN/3J both 12.89825 0.5808409469 14.0378809527 11.7586190473
BTBR T+ Itpr3tf/J both 14.4236722488 0.5752558081 15.552344957 13.2949995406
BUB/BnJ both 9.0037946429 0.6095206842 10.1996962778 7.8078930079
C3H/HeJ both 15.6955952381 0.5738845169 16.8215774235 14.5696130527
C57BL/6J both 12.5350625 0.6601345309 13.8302703333 11.2398546667
C57BLKS/J both 13.0319099379 0.6226301557 14.2535328301 11.8102870456
C57BR/cdJ both 13.9306428571 0.6400555498 15.186455003 12.6748307113
C57L/J both 16.2911904762 0.5302328149 17.3315264429 15.2508545095
C58/J both 11.5254736842 0.5884339613 12.6800024058 10.3709449626
CAST/EiJ both 13.8635897436 0.7353006162 15.3062761557 12.4209033315
CBA/J both 15.1010233918 0.7432555917 16.5593177538 13.6427290298
CE/J both 14.3288038278 0.5752558081 15.457476536 13.2001311195
DBA/2J both 11.6246794872 0.6325295069 12.8657252647 10.3836337096
FVB/NJ both 10.8906932773 0.6629024027 12.1913317753 9.5900547794
I/LnJ both 9.7875 1.4727005927 12.6769918454 6.8980081546
KK/HlJ both 12.3223214286 0.7225855257 13.7400603732 10.9045824839
LP/J both 15.7092132505 0.5543831191 16.7969329878 14.6214935132
MA/MyJ both 12.8946428571 0.9051752391 14.6706294256 11.1186562886
NOD/ShiLtJ both 12.9284189723 0.5477573619 14.0031387342 11.8536992104
NON/ShiLtJ both 12.3247368421 0.5959302375 13.4939735289 11.1555001553
NZB/BlNJ both 15.4804411765 0.6629024027 16.7810796744 14.1798026785
NZW/LacJ both 11.9103250774 0.6132071555 13.1134597023 10.7071904525
PL/J both 12.8492156863 0.6211986935 14.068029998 11.6304013746
RBF/DnJ both 12.656 1.1616818938 14.9352619053 10.3767380947
RIIIS/J both 12.7177302632 0.6232387604 13.9405472599 11.4949132664
SEA/GnJ both 9.0289583333 0.5109451252 10.031451155 8.0264655116
SJL/J both 13.138125 0.8140658824 14.7353517143 11.5408982857
SM/J both 11.6800793651 0.5899886112 12.837658366 10.5225003641
SWR/J both 15.226147343 0.5780281413 16.3602594693 14.0920352167




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA