Project measure / variable:   Graubert1   lymphoid_tumor_enu

ID, description, units MPD:11658   lymphoid_tumor_enu   lymphoid tumor frequency rate   [score]  ENU  
ENU study
Data set, strains Graubert1   inbred   20 strains     sex: both     age: 13-68wks
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  STRAIN COMPARISON PLOT
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Graubert1 - lymphoid tumor frequency rate ENU



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested20 strains20 strains
Mean of the strain means0.214   score 0.156   score
Median of the strain means0.167   score 0.0835   score
SD of the strain means± 0.258 ± 0.189
Coefficient of variation (CV)1.21 1.21
Min–max range of strain means0   –   0.833   score 0   –   0.500   score
Mean sample size per strain6.1   mice 6.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1322 0.1322 1.103 0.2949
strain 19 9.185 0.4834 4.0321 < 0.0001
sex:strain 19 2.6375 0.1388 1.1578 0.2972
Residuals 200 23.9786 0.1199


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   6 0.0 0.0 -0.83
129S1/SvImJ m 0.167 0.408   6 0.167 2.45 0.06
A/J f 0.0 0.0   8 0.0 0.0 -0.83
A/J m 0.0 0.0   6 0.0 0.0 -0.83
AKR/J f 0.667 0.516   6 0.211 0.775 1.75
AKR/J m 0.5 0.548   6 0.224 1.1 1.82
BALB/cByJ f 0.167 0.408   6 0.167 2.45 -0.18
BALB/cByJ m 0.333 0.516   6 0.211 1.55 0.94
C3H/HeJ f 0.0 0.0   6 0.0 0.0 -0.83
C3H/HeJ m 0.167 0.408   6 0.167 2.45 0.06
C57BL/6J f 0.5 0.548   6 0.224 1.1 1.11
C57BL/6J m 0.286 0.488   7 0.184 1.71 0.69
C57L/J f 0.167 0.408   6 0.167 2.45 -0.18
C57L/J m 0.0 0.0   6 0.0 0.0 -0.83
C58/J f 0.667 0.516   6 0.211 0.775 1.75
C58/J m 0.5 0.548   6 0.224 1.1 1.82
CAST/EiJ f 0.0 0.0   6 0.0 0.0 -0.83
CAST/EiJ m 0.0 0.0   6 0.0 0.0 -0.83
DBA/2J f 0.2 0.447   5 0.2 2.24 -0.06
DBA/2J m 0.0 0.0   7 0.0 0.0 -0.83
FVB/NJ f 0.833 0.408   6 0.167 0.49 2.39
FVB/NJ m 0.167 0.408   6 0.167 2.45 0.06
MOLF/EiJ f 0.0 0.0   2   0.0 0.0 -0.83
MOLF/EiJ m 0.0 0.0   5 0.0 0.0 -0.83
NOD/ShiLtJ f 0.333 0.516   6 0.211 1.55 0.46
NOD/ShiLtJ m 0.5 0.548   6 0.224 1.1 1.82
NZB/BlNJ f 0.167 0.408   6 0.167 2.45 -0.18
NZB/BlNJ m 0.0 0.0   6 0.0 0.0 -0.83
PERA/EiJ f 0.167 0.408   6 0.167 2.45 -0.18
PERA/EiJ m 0.0 0.0   6 0.0 0.0 -0.83
PL/J f 0.167 0.408   6 0.167 2.45 -0.18
PL/J m 0.167 0.408   6 0.167 2.45 0.06
SJL/J f 0.25 0.5   4 0.25 2.0 0.14
SJL/J m 0.0 0.0   6 0.0 0.0 -0.83
SM/J f 0.0 0.0   6 0.0 0.0 -0.83
SM/J m 0.333 0.516   6 0.211 1.55 0.94
SPRET/EiJ f 0.0 0.0   10 0.0 0.0 -0.83
SPRET/EiJ m 0.0 0.0   4 0.0 0.0 -0.83
SWR/J f 0.0 0.0   8 0.0 0.0 -0.83
SWR/J m 0.0 0.0   6 0.0 0.0 -0.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.1414 0.2787 -0.2787
129S1/SvImJ m 0.1667 0.1414 0.4454 -0.1121
A/J f 0.0 0.1224 0.2414 -0.2414
A/J m 0.0 0.1414 0.2787 -0.2787
AKR/J f 0.6667 0.1414 0.9454 0.3879
AKR/J m 0.5 0.1414 0.7787 0.2213
BALB/cByJ f 0.1667 0.1414 0.4454 -0.1121
BALB/cByJ m 0.3333 0.1414 0.6121 0.0546
C3H/HeJ f 0.0 0.1414 0.2787 -0.2787
C3H/HeJ m 0.1667 0.1414 0.4454 -0.1121
C57BL/6J f 0.5 0.1414 0.7787 0.2213
C57BL/6J m 0.2857 0.1309 0.5438 0.0276
C57L/J f 0.1667 0.1414 0.4454 -0.1121
C57L/J m 0.0 0.1414 0.2787 -0.2787
C58/J f 0.6667 0.1414 0.9454 0.3879
C58/J m 0.5 0.1414 0.7787 0.2213
CAST/EiJ f 0.0 0.1414 0.2787 -0.2787
CAST/EiJ m 0.0 0.1414 0.2787 -0.2787
DBA/2J f 0.2 0.1549 0.5053 -0.1053
DBA/2J m 0.0 0.1309 0.2581 -0.2581
FVB/NJ f 0.8333 0.1414 1.1121 0.5546
FVB/NJ m 0.1667 0.1414 0.4454 -0.1121
MOLF/EiJ f 0.0 0.2448 0.4828 -0.4828
MOLF/EiJ m 0.0 0.1549 0.3053 -0.3053
NOD/ShiLtJ f 0.3333 0.1414 0.6121 0.0546
NOD/ShiLtJ m 0.5 0.1414 0.7787 0.2213
NZB/BlNJ f 0.1667 0.1414 0.4454 -0.1121
NZB/BlNJ m 0.0 0.1414 0.2787 -0.2787
PERA/EiJ f 0.1667 0.1414 0.4454 -0.1121
PERA/EiJ m 0.0 0.1414 0.2787 -0.2787
PL/J f 0.1667 0.1414 0.4454 -0.1121
PL/J m 0.1667 0.1414 0.4454 -0.1121
SJL/J f 0.25 0.1731 0.5914 -0.0914
SJL/J m 0.0 0.1414 0.2787 -0.2787
SM/J f 0.0 0.1414 0.2787 -0.2787
SM/J m 0.3333 0.1414 0.6121 0.0546
SPRET/EiJ f 0.0 0.1095 0.2159 -0.2159
SPRET/EiJ m 0.0 0.1731 0.3414 -0.3414
SWR/J f 0.0 0.1224 0.2414 -0.2414
SWR/J m 0.0 0.1414 0.2787 -0.2787


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0833 0.1 0.2804 -0.1138
A/J both 0.0 0.0935 0.1844 -0.1844
AKR/J both 0.5833 0.1 0.7804 0.3862
BALB/cByJ both 0.25 0.1 0.4471 0.0529
C3H/HeJ both 0.0833 0.1 0.2804 -0.1138
C57BL/6J both 0.3929 0.0963 0.5828 0.2029
C57L/J both 0.0833 0.1 0.2804 -0.1138
C58/J both 0.5833 0.1 0.7804 0.3862
CAST/EiJ both 0.0 0.1 0.1971 -0.1971
DBA/2J both 0.1 0.1014 0.2999 -0.0999
FVB/NJ both 0.5 0.1 0.6971 0.3029
MOLF/EiJ both 0.0 0.1448 0.2856 -0.2856
NOD/ShiLtJ both 0.4167 0.1 0.6138 0.2196
NZB/BlNJ both 0.0833 0.1 0.2804 -0.1138
PERA/EiJ both 0.0833 0.1 0.2804 -0.1138
PL/J both 0.1667 0.1 0.3638 -0.0304
SJL/J both 0.125 0.1118 0.3454 -0.0954
SM/J both 0.1667 0.1 0.3638 -0.0304
SPRET/EiJ both 0.0 0.1024 0.202 -0.202
SWR/J both 0.0 0.0935 0.1844 -0.1844




  GWAS USING LINEAR MIXED MODELS