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Project measure / variable:   CSNA03   omit_cc_rev_Binghamton

ID, description, units MPD:112896   omit_cc_rev_Binghamton   total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), CC   [n]  reversal  
Data set, strains CSNA03   CC w/par   18 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of omissions (successful response in central nose poke hole, but no response in flanking hole within 30 s) (reversal learning assay), CC reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested17 strains18 strains
Mean of the strain means31.933   n 23.563   n
Median of the strain means23.714   n 19.7   n
SD of the strain means± 29.173 ± 15.451
Coefficient of variation (CV)0.9136 0.6558
Min–max range of strain means5.5   –   110.0   n 2.4   –   46.333   n
Mean sample size per strain4.4   mice 3.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 556.3762 556.3762 0.5833 0.4468
strain 15 34582.884 2305.5256 2.417 0.0047
sex:strain 15 19627.1152 1308.4743 1.3718 0.1752
Residuals 104 99202.2643 953.8679


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 23.714 21.085   7 7.9693 0.8891 2.0, 53.0 -0.28
129S1/SvImJ m 44.2 31.87   5 14.253 0.721 5.0, 92.0 1.34
A/J f 82.83 56.26   6 22.967 0.6792 8.0, 146.0 1.74
A/J m 30.2 28.665   5 12.82 0.9492 5.0, 76.0 0.43
C57BL/6J f 16.333 10.764   6 4.3944 0.659 1.0, 30.0 -0.53
C57BL/6J m 46.333 55.86   6 22.806 1.2057 1.0, 147.0 1.47
CAST/EiJ f 27.286 34.659   7 13.1 1.2702 1.0, 102.0 -0.16
CAST/EiJ m 16.25 12.176   4 6.0879 0.7493 4.0, 32.0 -0.47
CC002/UncJ f 110.0 140.0   2   99.0 1.2728 11.0, 209.0 2.68
CC002/UncJ m 45.0 57.98   2   41.0 1.2885 4.0, 86.0 1.39
CC004/TauUncJ f 5.5 5.6862   4 2.8431 1.0339 2.0, 14.0 -0.91
CC004/TauUncJ m 20.0 24.664   7 9.3223 1.2332 1.0, 72.0 -0.23
CC006/TauUncJ f 5.6667 5.6862   3 3.283 1.0035 1.0, 12.0 -0.9
CC006/TauUncJ m 12.667 9.815   3 5.6667 0.7749 7.0, 24.0 -0.71
CC011/UncJ f 68.33 58.39   3 33.711 0.8545 1.0, 105.0 1.25
CC011/UncJ m 7.0 0.0   1   0.0 0.0 7.0, 7.0 -1.07
CC012/GeniUncJ f 47.0 43.509   3 25.12 0.9257 3.0, 90.0 0.52
CC012/GeniUncJ m 35.5 37.477   2   26.5 1.0557 9.0, 62.0 0.77
CC025/GeniUncJ m 7.5 9.1924   2   6.5 1.2257 1.0, 14.0 -1.04
CC028/GeniUncJ f 16.0 14.422   3 8.3267 0.9014 4.0, 32.0 -0.55
CC028/GeniUncJ m 4.0 2.6458   3 1.5275 0.6614 1.0, 6.0 -1.27
CC032/GeniUncJ f 20.5 17.678   2   12.5 0.8623 8.0, 33.0 -0.39
CC032/GeniUncJ m 37.333 34.559   3 19.953 0.9257 4.0, 73.0 0.89
CC041/TauUncJ f 28.25 22.853   4 11.426 0.8089 9.0, 54.0 -0.13
CC041/TauUncJ m 19.4 21.916   5 9.801 1.1297 1.0, 52.0 -0.27
CC061/GeniUncJ f 9.0 9.5394   3 5.5076 1.0599 3.0, 20.0 -0.79
CC061/GeniUncJ m 42.0 39.598   2   28.0 0.9428 14.0, 70.0 1.19
NOD/ShiLtJ f 17.8 15.057   5 6.7335 0.8459 1.0, 40.0 -0.48
NOD/ShiLtJ m 9.6 12.219   5 5.4644 1.2728 1.0, 31.0 -0.9
NZO/HlLtJ f 24.857 23.305   7 8.8086 0.9376 5.0, 72.0 -0.24
NZO/HlLtJ m 31.75 27.011   4 13.505 0.8507 6.0, 65.0 0.53
PWK/PhJ f 10.0 7.0711   4 3.5355 0.7071 1.0, 18.0 -0.75
PWK/PhJ m 2.4 1.1402   5 0.5099 0.4751 1.0, 4.0 -1.37
WSB/EiJ f 29.8 18.308   5 8.1878 0.6144 7.0, 57.0 -0.07
WSB/EiJ m 13.0 13.54   4 6.77 1.0415 3.0, 33.0 -0.68


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 23.7142857143 11.6733391344 46.8629552771 0.5656161514
129S1/SvImJ m 44.2 13.8120811308 71.5898752013 16.8101247987
A/J f 82.8333333333 12.6086473358 107.8367541583 57.8299125083
A/J m 30.2 13.8120811308 57.5898752013 2.8101247987
C57BL/6J f 16.3333333333 12.6086473358 41.3367541583 -8.6700874917
C57BL/6J m 46.3333333333 12.6086473358 71.3367541583 21.3299125083
CAST/EiJ f 27.2857142857 11.6733391344 50.4343838486 4.1370447229
CAST/EiJ m 16.25 15.4423761596 46.8728114227 -14.3728114227
CC002/UncJ f 110.0 21.8388178002 153.3071952319 66.6928047681
CC002/UncJ m 45.0 21.8388178002 88.3071952319 1.6928047681
CC004/TauUncJ f 5.5 15.4423761596 36.1228114227 -25.1228114227
CC004/TauUncJ m 20.0 11.6733391344 43.1486695629 -3.1486695629
CC006/TauUncJ f 5.6666666667 17.8313200654 41.0268435031 -29.6935101698
CC006/TauUncJ m 12.6666666667 17.8313200654 48.0268435031 -22.6935101698
CC012/GeniUncJ f 47.0 17.8313200654 82.3601768364 11.6398231636
CC012/GeniUncJ m 35.5 21.8388178002 78.8071952319 -7.8071952319
CC028/GeniUncJ f 16.0 17.8313200654 51.3601768364 -19.3601768364
CC028/GeniUncJ m 4.0 17.8313200654 39.3601768364 -31.3601768364
CC032/GeniUncJ f 20.5 21.8388178002 63.8071952319 -22.8071952319
CC032/GeniUncJ m 37.3333333333 17.8313200654 72.6935101698 1.9731564969
CC041/TauUncJ f 28.25 15.4423761596 58.8728114227 -2.3728114227
CC041/TauUncJ m 19.4 13.8120811308 46.7898752013 -7.9898752013
CC061/GeniUncJ f 9.0 17.8313200654 44.3601768364 -26.3601768364
CC061/GeniUncJ m 42.0 21.8388178002 85.3071952319 -1.3071952319
NOD/ShiLtJ f 17.8 13.8120811308 45.1898752013 -9.5898752013
NOD/ShiLtJ m 9.6 13.8120811308 36.9898752013 -17.7898752013
NZO/HlLtJ f 24.8571428571 11.6733391344 48.00581242 1.7084732943
NZO/HlLtJ m 31.75 15.4423761596 62.3728114227 1.1271885773
PWK/PhJ f 10.0 15.4423761596 40.6228114227 -20.6228114227
PWK/PhJ m 2.4 13.8120811308 29.7898752013 -24.9898752013
WSB/EiJ f 29.8 13.8120811308 57.1898752013 2.4101247987
WSB/EiJ m 13.0 15.4423761596 43.6228114227 -17.6228114227


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 33.9571428571 9.0421296124 51.8880251979 16.0262605164
A/J both 56.5166666667 9.3508231296 75.0596998361 37.9736334972
C57BL/6J both 31.3333333333 8.9156600327 49.0134217515 13.6532449151
CAST/EiJ both 21.7678571429 9.6790214898 40.9617199768 2.5739943089
CC002/UncJ both 77.5 15.4423761596 108.1228114227 46.8771885773
CC004/TauUncJ both 12.75 9.6790214898 31.943862834 -6.443862834
CC006/TauUncJ both 9.1666666667 12.6086473358 34.1700874917 -15.8367541583
CC012/GeniUncJ both 41.25 14.0968962735 69.2046743174 13.2953256826
CC028/GeniUncJ both 10.0 12.6086473358 35.003420825 -15.003420825
CC032/GeniUncJ both 28.9166666667 14.0968962735 56.871340984 0.9619923493
CC041/TauUncJ both 23.825 10.3590608481 44.367406401 3.282593599
CC061/GeniUncJ both 25.5 14.0968962735 53.4546743174 -2.4546743174
NOD/ShiLtJ both 13.7 9.7666162299 33.0675664907 -5.6675664907
NZO/HlLtJ both 28.3035714286 9.6790214898 47.4974342625 9.1097085946
PWK/PhJ both 6.2 10.3590608481 26.742406401 -14.342406401
WSB/EiJ both 21.4 10.3590608481 41.942406401 0.857593599




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA