Project measure / variable:   Schoonjans1   GCDCA_feces_CD

ID, description, units MPD:112772   GCDCA_feces_CD   bile acid glycochenodeoxycholic acid amount in feces, at 24 wks   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   32 strains     sex: m     age: 24wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid glycochenodeoxycholic acid amount in feces, at 24 wks CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested32 strains
Mean of the strain means0.07654   ng/mL
Median of the strain means0.08016   ng/mL
SD of the strain means± 0.01359
Coefficient of variation (CV)0.1775
Min–max range of strain means0.03064   –   0.08643   ng/mL
Mean sample size per strain1.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 1 0.0001 0.0001 0.0477 0.8411
Residuals 3 0.0083 0.0028


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.03064 0.0497   3 0.0287 1.6222 0.00039157, 0.088 -3.38
BXD100 m 0.0411 0.0576   2   0.04073 1.4013 0.00037425, 0.08183 -2.61
BXD34 m 0.0836 0.0   1   0.0 0.0 0.0836, 0.0836 0.52
BXD39 m 0.08643 0.0   1   0.0 0.0 0.08643, 0.08643 0.73
BXD40 m 0.0775 0.0   1   0.0 0.0 0.0775, 0.0775 0.07
BXD43 m 0.07958 0.0   1   0.0 0.0 0.07958, 0.07958 0.22
BXD45 m 0.0351 0.0   1   0.0 0.0 0.0351, 0.0351 -3.05
BXD48 m 0.07886 0.0   1   0.0 0.0 0.07886, 0.07886 0.17
BXD48a m 0.0827 0.0   1   0.0 0.0 0.0827, 0.0827 0.45
BXD49 m 0.07915 0.0   1   0.0 0.0 0.07915, 0.07915 0.19
BXD51 m 0.08106 0.0   1   0.0 0.0 0.08106, 0.08106 0.33
BXD53 m 0.08326 0.0   1   0.0 0.0 0.08326, 0.08326 0.49
BXD55 m 0.07799 0.0   1   0.0 0.0 0.07799, 0.07799 0.11
BXD6 m 0.08232 0.0   1   0.0 0.0 0.08232, 0.08232 0.43
BXD62 m 0.07868 0.0   1   0.0 0.0 0.07868, 0.07868 0.16
BXD63 m 0.08071 0.0   1   0.0 0.0 0.08071, 0.08071 0.31
BXD64 m 0.07905 0.0   1   0.0 0.0 0.07905, 0.07905 0.18
BXD66 m 0.07873 0.0   1   0.0 0.0 0.07873, 0.07873 0.16
BXD67 m 0.07994 0.0   1   0.0 0.0 0.07994, 0.07994 0.25
BXD69 m 0.08192 0.0   1   0.0 0.0 0.08192, 0.08192 0.4
BXD73 m 0.08138 0.0   1   0.0 0.0 0.08138, 0.08138 0.36
BXD75 m 0.07891 0.0   1   0.0 0.0 0.07891, 0.07891 0.17
BXD77 m 0.08037 0.0   1   0.0 0.0 0.08037, 0.08037 0.28
BXD79 m 0.08149 0.0   1   0.0 0.0 0.08149, 0.08149 0.36
BXD8 m 0.08333 0.0   1   0.0 0.0 0.08333, 0.08333 0.5
BXD81 m 0.07985 0.0   1   0.0 0.0 0.07985, 0.07985 0.24
BXD84 m 0.08132 0.0   1   0.0 0.0 0.08132, 0.08132 0.35
BXD87 m 0.07919 0.0   1   0.0 0.0 0.07919, 0.07919 0.2
BXD89 m 0.08337 0.0   1   0.0 0.0 0.08337, 0.08337 0.5
BXD90 m 0.08226 0.0   1   0.0 0.0 0.08226, 0.08226 0.42
C57BL/6J m 0.08125 0.0   1   0.0 0.0 0.08125, 0.08125 0.35
DBA/2J m 0.07817 0.0   1   0.0 0.0 0.07817, 0.07817 0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.0306382867 0.0302911294 0.1270381795 -0.0657616061
BXD100 m 0.041102125 0.0370989054 0.1591673993 -0.0769631493




  GWAS USING LINEAR MIXED MODELS