Project measure / variable:   Schoonjans1   oxo_CA_feces_HFD

ID, description, units MPD:112755   oxo_CA_feces_HFD   bile acid 3-oxocholic acid amount in feces, at 24 wks   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 24wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid 3-oxocholic acid amount in feces, at 24 wks HFD

BXD48BXD51BXD1BXD48aC57BL/6JBXD11BXD6BXD77BXD75BXD53BXD32BXD87BXD73DBA/2JBXD69BXD49BXD45BXD90BXD66BXD89BXD55BXD34BXD81BXD27BXD43BXD39BXD63BXD67BXD40BXD64BXD12BXD79BXD84BXD62BXD100BXD8 ng/mL 0.00.51.01.52.02.53.0femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.37483   ng/mL
Median of the strain means0.26582   ng/mL
SD of the strain means± 0.34329
Coefficient of variation (CV)0.9158
Min–max range of strain means0.02313   –   1.4604   ng/mL
Mean sample size per strain4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 20.0009 0.5715 4.6303 < 0.0001
Residuals 136 16.7846 0.1234


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 36 (36)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 1.0118 0.48901   5 0.21869 0.4833 0.5664, 1.7423 1.86
BXD100 m 0.07603 0.01571   4 0.00785723 0.2067 0.05521, 0.09294 -0.87
BXD11 m 0.6745 0.62784   3 0.36248 0.9308 0.07463, 1.327 0.87
BXD12 m 0.1088 0.06474   4 0.03237 0.595 0.02798, 0.18083 -0.77
BXD27 m 0.18267 0.16707   6 0.06821 0.9146 0.05666, 0.51127 -0.56
BXD32 m 0.41595 0.19953   4 0.09977 0.4797 0.23804, 0.66927 0.12
BXD34 m 0.19155 0.09211   4 0.04605 0.4808 0.11685, 0.31852 -0.53
BXD39 m 0.1623 0.13201   5 0.05904 0.8134 0.07015, 0.39252 -0.62
BXD40 m 0.13282 0.11353   5 0.05077 0.8548 0.05916, 0.3241 -0.7
BXD43 m 0.17968 0.17792   5 0.07957 0.9902 0.0285, 0.48283 -0.57
BXD45 m 0.28579 0.26752   5 0.11964 0.9361 0.11577, 0.75482 -0.26
BXD48 m 1.4604 1.1242   5 0.50278 0.7698 0.2216, 3.0835 3.16
BXD48a m 0.9083 0.70187   5 0.31388 0.7727 0.30872, 2.1125 1.55
BXD49 m 0.30437 0.18118   5 0.08103 0.5953 0.13423, 0.60639 -0.21
BXD51 m 1.3151 0.55189   5 0.24681 0.4197 0.58727, 1.8528 2.74
BXD53 m 0.44419 0.46384   5 0.20744 1.0442 0.02656, 1.195 0.2
BXD55 m 0.20615 0.07926   5 0.03545 0.3845 0.0905, 0.27208 -0.49
BXD6 m 0.64489 0.49773   5 0.22259 0.7718 0.07876, 1.2353 0.79
BXD62 m 0.08198 0.05615   5 0.02511 0.685 0.02769, 0.16227 -0.85
BXD63 m 0.1481 0.03572   5 0.01597 0.2412 0.11282, 0.19602 -0.66
BXD64 m 0.11377 0.07235   5 0.03236 0.636 0.04466, 0.22644 -0.76
BXD66 m 0.24955 0.19131   5 0.08556 0.7666 0.09483, 0.56311 -0.36
BXD67 m 0.13513 0.11329   5 0.05067 0.8384 0.03349, 0.30089 -0.7
BXD69 m 0.3166 0.15896   5 0.07109 0.5021 0.18631, 0.55923 -0.17
BXD73 m 0.34354 0.38014   5 0.17 1.1066 0.1304, 1.0189 -0.09
BXD75 m 0.56186 0.36318   5 0.16242 0.6464 0.09878, 1.0261 0.54
BXD77 m 0.57074 0.42104   5 0.1883 0.7377 0.05167, 1.0391 0.57
BXD79 m 0.1047 0.04998   5 0.02235 0.4773 0.03734, 0.16381 -0.79
BXD8 m 0.02313 0.01136   4 0.00568003 0.4912 0.00717125, 0.03341 -1.02
BXD81 m 0.19152 0.21134   5 0.09452 1.1035 0.06979, 0.56386 -0.53
BXD84 m 0.0952 0.02507   3 0.01447 0.2633 0.0665, 0.11278 -0.81
BXD87 m 0.34792 0.18475   5 0.08262 0.531 0.09541, 0.53509 -0.08
BXD89 m 0.22611 0.10278   5 0.04597 0.4546 0.09994, 0.34862 -0.43
BXD90 m 0.28208 0.08999   5 0.04025 0.319 0.21779, 0.43538 -0.27
C57BL/6J m 0.67462 0.58755   5 0.26276 0.8709 0.06909, 1.4407 0.87
DBA/2J m 0.32215 0.07202   5 0.03221 0.2236 0.23716, 0.41431 -0.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 1.011762 0.1571090034 1.3224546027 0.7010693973
BXD100 m 0.0760325 0.1756532057 0.4233973898 -0.2713323898
BXD11 m 0.6744966667 0.2028268512 1.075599092 0.2733942413
BXD12 m 0.108805 0.1756532057 0.4561698898 -0.2385598898
BXD27 m 0.1826666667 0.1434202419 0.4662889116 -0.1009555782
BXD32 m 0.4159475 0.1756532057 0.7633123898 0.0685826102
BXD34 m 0.1915525 0.1756532057 0.5389173898 -0.1558123898
BXD39 m 0.162296 0.1571090034 0.4729886027 -0.1483966027
BXD40 m 0.132818 0.1571090034 0.4435106027 -0.1778746027
BXD43 m 0.179678 0.1571090034 0.4903706027 -0.1310146027
BXD45 m 0.285794 0.1571090034 0.5964866027 -0.0248986027
BXD48 m 1.46042 0.1571090034 1.7711126027 1.1497273973
BXD48a m 0.908296 0.1571090034 1.2189886027 0.5976033973
BXD49 m 0.30437 0.1571090034 0.6150626027 -0.0063226027
BXD51 m 1.31509 0.1571090034 1.6257826027 1.0043973973
BXD53 m 0.444194 0.1571090034 0.7548866027 0.1335013973
BXD55 m 0.20615 0.1571090034 0.5168426027 -0.1045426027
BXD6 m 0.644888 0.1571090034 0.9555806027 0.3341953973
BXD62 m 0.081976 0.1571090034 0.3926686027 -0.2287166027
BXD63 m 0.1481 0.1571090034 0.4587926027 -0.1625926027
BXD64 m 0.113766 0.1571090034 0.4244586027 -0.1969266027
BXD66 m 0.249552 0.1571090034 0.5602446027 -0.0611406027
BXD67 m 0.135126 0.1571090034 0.4458186027 -0.1755666027
BXD69 m 0.316604 0.1571090034 0.6272966027 0.0059113973
BXD73 m 0.343536 0.1571090034 0.6542286027 0.0328433973
BXD75 m 0.561856 0.1571090034 0.8725486027 0.2511633973
BXD77 m 0.57074 0.1571090034 0.8814326027 0.2600473973
BXD79 m 0.1047 0.1571090034 0.4153926027 -0.2059926027
BXD8 m 0.0231278125 0.1756532057 0.3704927023 -0.3242370773
BXD81 m 0.191522 0.1571090034 0.5022146027 -0.1191706027
BXD84 m 0.0952033333 0.2028268512 0.4963057587 -0.305899092
BXD87 m 0.34792 0.1571090034 0.6586126027 0.0372273973
BXD89 m 0.226114 0.1571090034 0.5368066027 -0.0845786027
BXD90 m 0.282082 0.1571090034 0.5927746027 -0.0286106027
C57BL/6J m 0.674624 0.1571090034 0.9853166027 0.3639313973
DBA/2J m 0.32215 0.1571090034 0.6328426027 0.0114573973




  GWAS USING LINEAR MIXED MODELS

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