Project measure / variable:   Schoonjans1   THDCA_plasma_t30_HFD

ID, description, units MPD:112711   THDCA_plasma_t30_HFD   plasma bile acid taurohyodeoxycholic acid amount, glucose kinetic test, at 20 wks of age, after 30 min   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 20wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - plasma bile acid taurohyodeoxycholic acid amount, glucose kinetic test, at 20 wks of age, after 30 min HFD

BXD84C57BL/6JBXD69BXD12BXD81BXD40BXD89BXD48aBXD75BXD64BXD48BXD79BXD63BXD77BXD45BXD34BXD39BXD73BXD51BXD6DBA/2JBXD53BXD8BXD66BXD49BXD1BXD67BXD90BXD11BXD27BXD100BXD87BXD55BXD32BXD43BXD62 ng/mL 010203040506070femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means10.709   ng/mL
Median of the strain means7.5167   ng/mL
SD of the strain means± 9.2987
Coefficient of variation (CV)0.8683
Min–max range of strain means1.001   –   35.813   ng/mL
Mean sample size per strain4.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 12974.1143 370.689 4.2057 < 0.0001
Residuals 120 10576.8366 88.1403


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 36 (36)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 4.5433 1.7183   5 0.76846 0.3782 3.232, 7.4719 -0.66
BXD100 m 3.511 1.8414   8 0.65104 0.5245 0.544, 5.844 -0.77
BXD11 m 3.6513 2.0168   3 1.1644 0.5524 2.068, 5.922 -0.76
BXD12 m 29.649 24.004   4 12.002 0.8096 4.048, 56.53 2.04
BXD27 m 3.5604 1.5901   5 0.71109 0.4466 1.158, 5.424 -0.77
BXD32 m 1.9995 1.7626   4 0.88128 0.8815 0.39, 4.404 -0.94
BXD34 m 8.0515 6.6584   4 3.3292 0.827 2.3, 14.59 -0.29
BXD39 m 7.9473 8.8418   3 5.1048 1.1125 2.342, 18.14 -0.3
BXD40 m 19.776 4.7503   4 2.3752 0.2402 14.112, 25.716 0.98
BXD43 m 1.6675 0.62695   5 0.28038 0.376 0.87941, 2.572 -0.97
BXD45 m 8.3208 5.6172   5 2.5121 0.6751 3.62, 17.87 -0.26
BXD48 m 11.672 4.3899   5 1.9632 0.3761 8.1, 17.762 0.1
BXD48a m 16.591 12.515   4 6.2577 0.7543 6.398, 34.58 0.63
BXD49 m 5.0644 3.4646   5 1.5494 0.6841 1.396, 9.634 -0.61
BXD51 m 7.3493 2.2957   3 1.3254 0.3124 5.492, 9.9159 -0.36
BXD53 m 6.0764 1.5579   5 0.69671 0.2564 4.018, 7.676 -0.5
BXD55 m 2.6656 0.74473   5 0.33305 0.2794 1.778, 3.598 -0.87
BXD6 m 6.5573 6.2116   5 2.7779 0.9473 0.954, 16.945 -0.45
BXD62 m 1.001 0.32377   4 0.16189 0.3234 0.678, 1.442 -1.04
BXD63 m 9.8956 3.3854   5 1.514 0.3421 6.498, 14.018 -0.09
BXD64 m 14.73 7.3425   5 3.2836 0.4985 5.936, 25.296 0.43
BXD66 m 5.5173 1.6554   3 0.95576 0.3 3.744, 7.022 -0.56
BXD67 m 4.064 2.4554   5 1.0981 0.6042 1.678, 7.992 -0.71
BXD69 m 30.076 19.997   4 9.9985 0.6649 6.124, 53.92 2.08
BXD73 m 7.684 3.8836   3 2.2422 0.5054 3.238, 10.414 -0.33
BXD75 m 15.925 6.658   4 3.329 0.4181 10.218, 24.324 0.56
BXD77 m 8.4864 1.3387   5 0.59867 0.1577 6.99, 9.92 -0.24
BXD79 m 10.62 15.988   5 7.15 1.5054 1.602, 39.06 -0.01
BXD8 m 5.576 3.0886   2   2.184 0.5539 3.392, 7.76 -0.55
BXD81 m 24.384 8.5202   5 3.8104 0.3494 15.68, 36.854 1.47
BXD84 m 35.813 25.604   5 11.451 0.7149 15.632, 75.9 2.7
BXD87 m 3.4365 2.7453   4 1.3726 0.7989 0.6, 7.052 -0.78
BXD89 m 18.475 18.203   5 8.1407 0.9853 8.538, 50.97 0.84
BXD90 m 4.063 1.1093   4 0.55465 0.273 2.552, 5.18 -0.71
C57BL/6J m 31.047 15.871   3 9.1633 0.5112 20.52, 49.302 2.19
DBA/2J m 6.0795 5.7854   3 3.3402 0.9516 1.684, 12.634 -0.5


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 4.54332 4.1985784502 12.8562131318 -3.7695731318
BXD100 m 3.511 3.3192677094 10.0829190605 -3.0609190605
BXD11 m 3.6513333333 5.4203414718 14.3832322194 -7.0805655527
BXD12 m 29.6495 4.6941534118 38.9435970662 20.3554029338
BXD27 m 3.5604 4.1985784502 11.8732931318 -4.7524931318
BXD32 m 1.9995 4.6941534118 11.2935970662 -7.2945970662
BXD34 m 8.0515 4.6941534118 17.3455970662 -1.2425970662
BXD39 m 7.9473333333 5.4203414718 18.6792322194 -2.7845655527
BXD40 m 19.7755 4.6941534118 29.0695970662 10.4814029338
BXD43 m 1.667482 4.1985784502 9.9803751318 -6.6454111318
BXD45 m 8.3208 4.1985784502 16.6336931318 0.0079068682
BXD48 m 11.6724 4.1985784502 19.9852931318 3.3595068682
BXD48a m 16.591 4.6941534118 25.8850970662 7.2969029338
BXD49 m 5.0644 4.1985784502 13.3772931318 -3.2484931318
BXD51 m 7.3493 5.4203414718 18.081198886 -3.382598886
BXD53 m 6.0764 4.1985784502 14.3892931318 -2.2364931318
BXD55 m 2.6656 4.1985784502 10.9784931318 -5.6472931318
BXD6 m 6.55726 4.1985784502 14.8701531318 -1.7556331318
BXD62 m 1.001 4.6941534118 10.2950970662 -8.2930970662
BXD63 m 9.8956 4.1985784502 18.2084931318 1.5827068682
BXD64 m 14.73 4.1985784502 23.0428931318 6.4171068682
BXD66 m 5.5173333333 5.4203414718 16.2492322194 -5.2145655527
BXD67 m 4.064 4.1985784502 12.3768931318 -4.2488931318
BXD69 m 30.0765 4.6941534118 39.3705970662 20.7824029338
BXD73 m 7.684 5.4203414718 18.415898886 -3.047898886
BXD75 m 15.925 4.6941534118 25.2190970662 6.6309029338
BXD77 m 8.4864 4.1985784502 16.7992931318 0.1735068682
BXD79 m 10.6204 4.1985784502 18.9332931318 2.3075068682
BXD8 m 5.576 6.6385354188 18.719838121 -7.567838121
BXD81 m 24.384 4.1985784502 32.6968931318 16.0711068682
BXD84 m 35.8132 4.1985784502 44.1260931318 27.5003068682
BXD87 m 3.4365 4.6941534118 12.7305970662 -5.8575970662
BXD89 m 18.4752 4.1985784502 26.7880931318 10.1623068682
BXD90 m 4.062975 4.6941534118 13.3570720662 -5.2311220662
C57BL/6J m 31.0466666667 5.4203414718 41.7785655527 20.3147677806
DBA/2J m 6.0795333333 5.4203414718 16.8114322194 -4.6523655527




  GWAS USING LINEAR MIXED MODELS

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