Project measure / variable:   Schoonjans1   CDCA_plasma_t30_CD

ID, description, units MPD:112692   CDCA_plasma_t30_CD   plasma bile acid chenodeoxycholic acid amount, glucose kinetic test, at 20 wks of age, after 30 min   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 20wks
Procedure biomarker quantification
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  STRAIN COMPARISON PLOT
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Schoonjans1 - plasma bile acid chenodeoxycholic acid amount, glucose kinetic test, at 20 wks of age, after 30 min CD

BXD6BXD55BXD77BXD40BXD49BXD32BXD12BXD73C57BL/6JBXD45BXD87BXD34BXD81BXD100BXD69BXD27BXD1BXD48aBXD89BXD79BXD43BXD90BXD66BXD62BXD75BXD48BXD39BXD51BXD8DBA/2JBXD53BXD64BXD63BXD11BXD67BXD84 ng/mL 051015202530femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means3.135   ng/mL
Median of the strain means1.4748   ng/mL
SD of the strain means± 3.6878
Coefficient of variation (CV)1.1764
Min–max range of strain means0.14551   –   14.446   ng/mL
Mean sample size per strain4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 2243.6621 64.1046 2.8384 < 0.0001
Residuals 125 2823.0696 22.5846


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 36 (36)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 1.7121 3.0896   5 1.3817 1.8046 0.19, 7.2344 -0.39
BXD100 m 2.0332 1.6424   5 0.73449 0.8078 0.668, 4.858 -0.3
BXD11 m 0.279 0.04562   4 0.02281 0.1635 0.226, 0.32 -0.77
BXD12 m 6.8587 7.7591   3 4.4797 1.1313 1.262, 15.716 1.01
BXD27 m 1.8275 1.455   4 0.7275 0.7962 0.53, 3.628 -0.35
BXD32 m 7.6964 12.234   5 5.4711 1.5895 0.734, 29.408 1.24
BXD34 m 2.546 0.91032   5 0.40711 0.3575 1.578, 3.768 -0.16
BXD39 m 0.86333 0.7419   3 0.42833 0.8593 0.434, 1.72 -0.62
BXD40 m 9.6 7.6259   4 3.813 0.7944 1.066, 17.102 1.75
BXD43 m 1.0845 1.0999   6 0.44904 1.0142 0.082, 3.1 -0.56
BXD45 m 3.1995 4.1179   4 2.059 1.287 0.436, 9.328 0.02
BXD48 m 0.8728 0.30956   5 0.13844 0.3547 0.612, 1.286 -0.61
BXD48a m 1.5135 0.08205   4 0.04102 0.0542 1.41, 1.594 -0.44
BXD49 m 8.3044 7.2525   5 3.2434 0.8733 0.752, 17.958 1.4
BXD51 m 0.8365 0.42763   4 0.21381 0.5112 0.32, 1.276 -0.62
BXD53 m 0.664 0.75252   4 0.37626 1.1333 0.116, 1.772 -0.67
BXD55 m 11.918 8.5217   5 3.811 0.715 5.672, 24.818 2.38
BXD6 m 14.446 11.641   5 5.2058 0.8058 4.896, 33.256 3.07
BXD62 m 0.9956 0.3739   5 0.16721 0.3755 0.54, 1.56 -0.58
BXD63 m 0.5145 0.19466   4 0.09733 0.3784 0.25, 0.718 -0.71
BXD64 m 0.5592 0.19937   5 0.08916 0.3565 0.286, 0.776 -0.7
BXD66 m 1.004 0.34529   5 0.15442 0.3439 0.702, 1.562 -0.58
BXD67 m 0.182 0.17168   4 0.08584 0.9433 0.026, 0.388 -0.8
BXD69 m 1.8456 3.0695   5 1.3727 1.6631 0.21, 7.31 -0.35
BXD73 m 5.042 7.0379   3 4.0634 1.3959 0.536, 13.152 0.52
BXD75 m 0.9508 0.63768   5 0.28518 0.6707 0.27, 1.972 -0.59
BXD77 m 10.209 11.494   5 5.1403 1.1259 2.682, 29.538 1.92
BXD79 m 1.2085 2.0019   4 1.0009 1.6565 0.07, 4.2 -0.52
BXD8 m 0.808 0.9048   5 0.40464 1.1198 0.148, 2.38 -0.63
BXD81 m 2.4477 1.9099   3 1.1027 0.7803 0.63, 4.438 -0.19
BXD84 m 0.14551 0.09946   5 0.04448 0.6835 0.028, 0.284 -0.81
BXD87 m 2.7944 2.353   5 1.0523 0.842 0.914, 6.788 -0.09
BXD89 m 1.436 1.0304   4 0.51522 0.7176 0.854, 2.98 -0.46
BXD90 m 1.0612 0.97134   5 0.4344 0.9153 0.054, 2.66 -0.56
C57BL/6J m 4.7128 3.4135   5 1.5266 0.7243 1.44, 9.458 0.43
DBA/2J m 0.6865 0.50048   4 0.25024 0.729 0.288, 1.382 -0.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 1.71208 2.125302669 5.9183177521 -2.4941577521
BXD100 m 2.0332 2.125302669 6.2394377521 -2.1730377521
BXD11 m 0.279 2.3761606204 4.9817167716 -4.4237167716
BXD12 m 6.8586666667 2.7437539476 12.2888962547 1.4284370786
BXD27 m 1.8275 2.3761606204 6.5302167716 -2.8752167716
BXD32 m 7.6964 2.125302669 11.9026377521 3.4901622479
BXD34 m 2.546 2.125302669 6.7522377521 -1.6602377521
BXD39 m 0.8633333333 2.7437539476 6.2935629214 -4.5668962547
BXD40 m 9.6 2.3761606204 14.3027167716 4.8972832284
BXD43 m 1.0845 1.9401270223 4.9242521651 -2.7552521651
BXD45 m 3.1995 2.3761606204 7.9022167716 -1.5032167716
BXD48 m 0.8728 2.125302669 5.0790377521 -3.3334377521
BXD48a m 1.5135 2.3761606204 6.2162167716 -3.1892167716
BXD49 m 8.3044 2.125302669 12.5106377521 4.0981622479
BXD51 m 0.8365 2.3761606204 5.5392167716 -3.8662167716
BXD53 m 0.664 2.3761606204 5.3667167716 -4.0387167716
BXD55 m 11.9184 2.125302669 16.1246377521 7.7121622479
BXD6 m 14.4456 2.125302669 18.6518377521 10.2393622479
BXD62 m 0.9956 2.125302669 5.2018377521 -3.2106377521
BXD63 m 0.5145 2.3761606204 5.2172167716 -4.1882167716
BXD64 m 0.5592 2.125302669 4.7654377521 -3.6470377521
BXD66 m 1.004 2.125302669 5.2102377521 -3.2022377521
BXD67 m 0.182 2.3761606204 4.8847167716 -4.5207167716
BXD69 m 1.8456 2.125302669 6.0518377521 -2.3606377521
BXD73 m 5.042 2.7437539476 10.4722295881 -0.3882295881
BXD75 m 0.9508 2.125302669 5.1570377521 -3.2554377521
BXD77 m 10.2092 2.125302669 14.4154377521 6.0029622479
BXD79 m 1.2085 2.3761606204 5.9112167716 -3.4942167716
BXD8 m 0.808 2.125302669 5.0142377521 -3.3982377521
BXD81 m 2.4476666667 2.7437539476 7.8778962547 -2.9825629214
BXD84 m 0.145506 2.125302669 4.3517437521 -4.0607317521
BXD87 m 2.7944 2.125302669 7.0006377521 -1.4118377521
BXD89 m 1.436 2.3761606204 6.1387167716 -3.2667167716
BXD90 m 1.0612 2.125302669 5.2674377521 -3.1450377521
C57BL/6J m 4.7128 2.125302669 8.9190377521 0.5065622479
DBA/2J m 0.6865 2.3761606204 5.3892167716 -4.0162167716




  GWAS USING LINEAR MIXED MODELS

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