Project measure / variable:   Schoonjans1   CA_plasma_t30_HFD

ID, description, units MPD:112691   CA_plasma_t30_HFD   plasma bile acid cholic acid amount, glucose kinetic test, at 20 wks of age, after 30 min   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 20wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means13.127   ng/mL
Median of the strain means8.6219   ng/mL
SD of the strain means± 13.207
Coefficient of variation (CV)1.0061
Min–max range of strain means0.33065   –   52.82   ng/mL
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 26683.2835 762.3795 1.5749 0.0382
Residuals 116 56154.3773 484.0895


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 36 (36)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 m 9.4665 9.613   5 4.2991 1.0155 0.762, 24.491 -0.28
BXD100 m 1.6929 1.9495   7 0.73685 1.1516 0.012, 5.5 -0.87
BXD11 m 10.352 7.422   3 4.2851 0.717 2.472, 17.21 -0.21
BXD12 m 6.8355 7.9683   4 3.9842 1.1657 0.204, 17.83 -0.48
BXD27 m 44.038 66.84   4 33.419 1.5177 0.58, 143.7 2.34
BXD32 m 11.223 10.162   4 5.0812 0.9055 2.234, 21.642 -0.14
BXD34 m 11.104 9.4   4 4.7 0.8466 2.502, 23.134 -0.15
BXD39 m 7.3987 6.2781   3 3.6246 0.8485 0.37, 12.45 -0.43
BXD40 m 32.689 26.192   4 13.096 0.8013 8.448, 62.03 1.48
BXD43 m 0.33065 0.274   4 0.137 0.8287 0.096, 0.72059 -0.97
BXD45 m 5.0004 1.322   5 0.59122 0.2644 3.376, 6.428 -0.62
BXD48 m 11.986 13.4   4 6.7001 1.1179 0.304, 27.78 -0.09
BXD48a m 12.713 5.3118   4 2.6559 0.4178 7.682, 20.214 -0.03
BXD49 m 52.82 69.16   5 30.93 1.3093 3.402, 158.7 3.01
BXD51 m 2.2268 1.6867   3 0.97381 0.7574 0.84, 4.1045 -0.83
BXD53 m 5.9532 4.2327   5 1.8929 0.711 2.922, 12.75 -0.54
BXD55 m 22.479 25.429   5 11.372 1.1312 3.984, 66.09 0.71
BXD6 m 28.907 31.965   5 14.295 1.1058 3.084, 75.73 1.19
BXD62 m 13.119 19.378   4 9.6892 1.4771 2.546, 42.128 0.0
BXD63 m 10.401 11.239   5 5.0264 1.0806 1.316, 29.894 -0.21
BXD64 m 6.8768 5.5099   5 2.4641 0.8012 1.356, 13.528 -0.47
BXD66 m 3.8513 1.4049   3 0.81114 0.3648 2.282, 4.992 -0.7
BXD67 m 13.641 13.704   5 6.1284 1.0046 2.438, 37.485 0.04
BXD69 m 44.391 35.576   4 17.788 0.8014 6.31, 86.44 2.37
BXD73 m 10.84 10.68   3 6.1664 0.9853 2.548, 22.892 -0.17
BXD75 m 34.971 43.115   4 21.558 1.2329 1.398, 98.17 1.65
BXD77 m 7.7772 4.3923   5 1.9643 0.5648 0.5, 11.09 -0.41
BXD79 m 4.0452 2.9682   5 1.3274 0.7338 1.798, 9.074 -0.69
BXD8 m 6.7127 8.6073   3 4.9694 1.2822 0.04, 16.428 -0.49
BXD81 m 7.0124 3.867   5 1.7294 0.5514 1.924, 12.128 -0.46
BXD84 m 3.1304 2.6849   5 1.2007 0.8577 0.614, 6.238 -0.76
BXD87 m 4.558 5.4804   4 2.7402 1.2024 1.394, 12.738 -0.65
BXD89 m 6.26 7.2887   5 3.2596 1.1643 0.604, 18.506 -0.52
BXD90 m 2.362 2.1152   3 1.2212 0.8955 0.97, 4.796 -0.82
C57BL/6J m 12.396 4.7098   3 2.7192 0.3799 7.162, 16.292 -0.06
DBA/2J m 3.0243 2.9925   3 1.7277 0.9895 0.92, 6.45 -0.76


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 9.46646 9.8396083188 28.9550440903 -10.0221240903
BXD100 m 1.6928571429 8.3159868355 18.1637169054 -14.7780026197
BXD11 m 10.352 12.7028797173 35.5116538743 -14.8076538743
BXD12 m 6.8355 11.0010165364 28.6243994056 -14.9533994056
BXD27 m 44.038 11.0010165364 65.8268994056 22.2491005944
BXD32 m 11.223 11.0010165364 33.0118994056 -10.5658994056
BXD34 m 11.1035 11.0010165364 32.8923994056 -10.6853994056
BXD39 m 7.3986666667 12.7028797173 32.558320541 -17.7609872076
BXD40 m 32.689 11.0010165364 54.4778994056 10.9001005944
BXD43 m 0.3306475 11.0010165364 22.1195469056 -21.4582519056
BXD45 m 5.0004 9.8396083188 24.4889840903 -14.4881840903
BXD48 m 11.9865 11.0010165364 33.7753994056 -9.8023994056
BXD48a m 12.713 11.0010165364 34.5018994056 -9.0758994056
BXD49 m 52.8216 9.8396083188 72.3101840903 33.3330159097
BXD51 m 2.2268333333 12.7028797173 27.3864872076 -22.932820541
BXD53 m 5.9532 9.8396083188 25.4417840903 -13.5353840903
BXD55 m 22.4792 9.8396083188 41.9677840903 2.9906159097
BXD6 m 28.9068 9.8396083188 48.3953840903 9.4182159097
BXD62 m 13.119 11.0010165364 34.9078994056 -8.6698994056
BXD63 m 10.4012 9.8396083188 29.8897840903 -9.0873840903
BXD64 m 6.8768 9.8396083188 26.3653840903 -12.6117840903
BXD66 m 3.8513333333 12.7028797173 29.0109872076 -21.308320541
BXD67 m 13.641 9.8396083188 33.1295840903 -5.8475840903
BXD69 m 44.3905 11.0010165364 66.1793994056 22.6016005944
BXD73 m 10.84 12.7028797173 35.9996538743 -14.3196538743
BXD75 m 34.9705 11.0010165364 56.7593994056 13.1816005944
BXD77 m 7.7772 9.8396083188 27.2657840903 -11.7113840903
BXD79 m 4.0452 9.8396083188 23.5337840903 -15.4433840903
BXD8 m 6.7126666667 12.7028797173 31.872320541 -18.4469872076
BXD81 m 7.0124 9.8396083188 26.5009840903 -12.4761840903
BXD84 m 3.1304 9.8396083188 22.6189840903 -16.3581840903
BXD87 m 4.558 11.0010165364 26.3468994056 -17.2308994056
BXD89 m 6.26 9.8396083188 25.7485840903 -13.2285840903
BXD90 m 2.362 12.7028797173 27.5216538743 -22.7976538743
C57BL/6J m 12.396 12.7028797173 37.5556538743 -12.7636538743
DBA/2J m 3.0243 12.7028797173 28.1839538743 -22.1353538743




  GWAS USING LINEAR MIXED MODELS

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