Project measure / variable:   CSNA03   days_criteria_cc_acq_JAX

ID, description, units MPD:110487   days_criteria_cc_acq_JAX   number of days to meet criteria, (reversal learning assay), CC   [n]  acquisition  
Data set, strains CSNA03   CC w/par   52 strains     sex: both     age:
Procedure operant conditioning chamber
Ontology mappings

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  STRAIN COMPARISON PLOT
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CSNA03 - number of days to meet criteria, (reversal learning assay), CC acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested51 strains49 strains
Mean of the strain means3.4365   n 3.1794   n
Median of the strain means2.3333   n 2.5   n
SD of the strain means± 2.7286 ± 2.1866
Coefficient of variation (CV)0.794 0.6878
Min–max range of strain means1.0   –   13.0   n 1.0   –   10.0   n
Mean sample size per strain3.0   mice 3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 10.2413 10.2413 1.3384 0.2488
strain 34 959.8265 28.2302 3.6893 < 0.0001
sex:strain 34 327.9471 9.6455 1.2605 0.1679
Residuals 192 1469.1644 7.6519


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 13.0 5.2915   3 3.0551 0.407 7.0, 17.0 3.5
129S1/SvImJ m 4.25 4.717   4 2.3585 1.1099 1.0, 11.0 0.49
A/J f 7.6667 3.4448   6 1.4063 0.4493 1.0, 10.0 1.55
A/J m 9.2 4.0866   5 1.8276 0.4442 5.0, 14.0 2.75
C57BL/6J f 2.9286 1.4917   14 0.39868 0.5094 1.0, 6.0 -0.19
C57BL/6J m 1.8182 0.98165   11 0.29598 0.5399 1.0, 4.0 -0.62
CAST/EiJ f 2.4 1.2649   10 0.4 0.527 1.0, 5.0 -0.38
CAST/EiJ m 4.125 3.3139   8 1.1717 0.8034 1.0, 9.0 0.43
CC001/UncJ f 5.0 1.0   3 0.57735 0.2 4.0, 6.0 0.57
CC001/UncJ m 2.5 0.70711   2   0.5 0.2828 2.0, 3.0 -0.31
CC002/UncJ f 1.5 0.57735   4 0.28868 0.3849 1.0, 2.0 -0.71
CC002/UncJ m 1.5 0.57735   4 0.28868 0.3849 1.0, 2.0 -0.77
CC003/UncJ f 2.0 1.4142   2   1.0 0.7071 1.0, 3.0 -0.53
CC003/UncJ m 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.54
CC004/TauUncJ f 4.0 0.0   1   0.0 0.0 4.0, 4.0 0.21
CC004/TauUncJ m 6.5 7.7782   2   5.5 1.1966 1.0, 12.0 1.52
CC005/TauUncJ f 3.0 1.0   3 0.57735 0.3333 2.0, 4.0 -0.16
CC005/TauUncJ m 1.0 0.0   2   0.0 0.0 1.0, 1.0 -1.0
CC006/TauUncJ f 2.0 1.4142   2   1.0 0.7071 1.0, 3.0 -0.53
CC006/TauUncJ m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.77
CC007/UncJ f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.89
CC008/GeniUncJ f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.89
CC008/GeniUncJ m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.54
CC009/UncJ f 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.71
CC009/UncJ m 1.0 0.0   2   0.0 0.0 1.0, 1.0 -1.0
CC011/UncJ f 3.0 1.7321   3 1.0 0.5774 2.0, 5.0 -0.16
CC011/UncJ m 1.6667 1.1547   3 0.66667 0.6928 1.0, 3.0 -0.69
CC012/GeniUncJ f 1.3333 0.57735   3 0.33333 0.433 1.0, 2.0 -0.77
CC012/GeniUncJ m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.08
CC013/GeniUncJ f 6.5 0.70711   2   0.5 0.1088 6.0, 7.0 1.12
CC013/GeniUncJ m 4.0 1.4142   2   1.0 0.3536 3.0, 5.0 0.38
CC015/UncJ f 11.0 0.0   1   0.0 0.0 11.0, 11.0 2.77
CC015/UncJ m 8.0 0.0   1   0.0 0.0 8.0, 8.0 2.2
CC016/GeniUncJ f 1.3333 0.57735   3 0.33333 0.433 1.0, 2.0 -0.77
CC016/GeniUncJ m 1.25 0.5   4 0.25 0.4 1.0, 2.0 -0.88
CC017/UncJ f 1.0 0.0   2   0.0 0.0 1.0, 1.0 -0.89
CC017/UncJ m 1.6667 1.1547   3 0.66667 0.6928 1.0, 3.0 -0.69
CC018/UncJ f 3.6667 3.0551   3 1.7638 0.8332 1.0, 7.0 0.08
CC018/UncJ m 1.0 0.0   2   0.0 0.0 1.0, 1.0 -1.0
CC019/TauUncJ f 1.75 0.5   4 0.25 0.2857 1.0, 2.0 -0.62
CC019/TauUncJ m 2.5 1.7321   4 0.86603 0.6928 1.0, 5.0 -0.31
CC023/GeniUncJ f 3.5 3.5355   2   2.5 1.0102 1.0, 6.0 0.02
CC023/GeniUncJ m 10.0 0.0   1   0.0 0.0 10.0, 10.0 3.12
CC025/GeniUncJ f 5.6667 1.5275   3 0.88192 0.2696 4.0, 7.0 0.82
CC025/GeniUncJ m 2.6667 2.0817   3 1.2019 0.7806 1.0, 5.0 -0.23
CC026/GeniUncJ f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.89
CC026/GeniUncJ m 4.0 4.2426   2   3.0 1.0607 1.0, 7.0 0.38
CC027/GeniUncJ f 2.0 1.4142   2   1.0 0.7071 1.0, 3.0 -0.53
CC027/GeniUncJ m 4.75 3.7749   4 1.8875 0.7947 2.0, 10.0 0.72
CC028/GeniUncJ f 10.0 9.5394   3 5.5076 0.9539 4.0, 21.0 2.41
CC028/GeniUncJ m 3.6667 2.5166   3 1.453 0.6863 1.0, 6.0 0.22
CC029/UncJ f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.53
CC029/UncJ m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.54
CC030/GeniUncJ f 1.0 0.0   2   0.0 0.0 1.0, 1.0 -0.89
CC030/GeniUncJ m 2.0 1.4142   2   1.0 0.7071 1.0, 3.0 -0.54
CC032/GeniUncJ f 3.5 3.5355   2   2.5 1.0102 1.0, 6.0 0.02
CC033/GeniUncJ f 4.5 0.70711   2   0.5 0.1571 4.0, 5.0 0.39
CC033/GeniUncJ m 2.5 0.70711   2   0.5 0.2828 2.0, 3.0 -0.31
CC035/UncJ m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.08
CC036/UncJ f 2.3333 0.57735   3 0.33333 0.2474 2.0, 3.0 -0.4
CC036/UncJ m 3.0 1.7321   3 1.0 0.5774 2.0, 5.0 -0.08
CC037/TauUncJ f 3.5 0.70711   2   0.5 0.202 3.0, 4.0 0.02
CC037/TauUncJ m 2.0 1.7321   3 1.0 0.866 1.0, 4.0 -0.54
CC040/TauUncJ f 1.6667 0.57735   3 0.33333 0.3464 1.0, 2.0 -0.65
CC040/TauUncJ m 3.3333 2.0817   3 1.2019 0.6245 1.0, 5.0 0.07
CC041/TauUncJ f 4.3333 3.5119   3 2.0276 0.8104 1.0, 8.0 0.33
CC041/TauUncJ m 7.5 2.1213   2   1.5 0.2828 6.0, 9.0 1.98
CC043/GeniUncJ f 3.0 2.8284   2   2.0 0.9428 1.0, 5.0 -0.16
CC043/GeniUncJ m 5.0 5.6569   2   4.0 1.1314 1.0, 9.0 0.83
CC044/UncJ f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.89
CC051/TauUncJ f 8.0 0.0   1   0.0 0.0 8.0, 8.0 1.67
CC051/TauUncJ m 4.0 0.0   1   0.0 0.0 4.0, 4.0 0.38
CC057/UncJ f 1.0 0.0   2   0.0 0.0 1.0, 1.0 -0.89
CC057/UncJ m 3.5 2.1213   2   1.5 0.6061 2.0, 5.0 0.15
CC059/TauUncJ f 6.5 6.455   4 3.2275 0.9931 2.0, 16.0 1.12
CC059/TauUncJ m 7.6 7.7974   5 3.4871 1.026 1.0, 21.0 2.02
CC060/UncJ f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.89
CC060/UncJ m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.54
CC061/GeniUncJ f 5.6667 4.1633   3 2.4037 0.7347 1.0, 9.0 0.82
CC061/GeniUncJ m 3.5 2.1213   2   1.5 0.6061 2.0, 5.0 0.15
CC074/UncJ f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.53
CC074/UncJ m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.54
CC075/UncJ f 1.0 0.0   2   0.0 0.0 1.0, 1.0 -0.89
CC075/UncJ m 1.0 0.0   1   0.0 0.0 1.0, 1.0 -1.0
CC078/TauUncJ f 2.0 1.0   3 0.57735 0.5 1.0, 3.0 -0.53
CC078/TauUncJ m 1.6667 1.1547   3 0.66667 0.6928 1.0, 3.0 -0.69
CC079/TauUncJ f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -0.53
CC079/TauUncJ m 1.5 0.70711   2   0.5 0.4714 1.0, 2.0 -0.77
CC080/TauUncJ f 5.5 4.9497   2   3.5 0.9 2.0, 9.0 0.76
CC080/TauUncJ m 1.0 0.0   1   0.0 0.0 1.0, 1.0 -1.0
CC084/TauJ f 5.5 6.364   2   4.5 1.1571 1.0, 10.0 0.76
CC084/TauJ m 4.0 2.8284   2   2.0 0.7071 2.0, 6.0 0.38
NOD/ShiLtJ f 2.125 2.031   8 0.71807 0.9558 1.0, 7.0 -0.48
NOD/ShiLtJ m 2.5455 1.9164   11 0.57783 0.7529 1.0, 7.0 -0.29
NZO/HlLtJ f 2.3333 2.3094   3 1.3333 0.9897 1.0, 5.0 -0.4
NZO/HlLtJ m 1.0 0.0   2   0.0 0.0 1.0, 1.0 -1.0
PWK/PhJ f 1.5556 0.88192   9 0.29397 0.5669 1.0, 3.0 -0.69
PWK/PhJ m 2.75 2.7646   8 0.97742 1.0053 1.0, 9.0 -0.2
WSB/EiJ f 3.5 3.3806   8 1.1952 0.9659 1.0, 11.0 0.02
WSB/EiJ m 1.8333 0.98319   6 0.40139 0.5363 1.0, 3.0 -0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 13.0 1.5970700332 16.1500553299 9.8499446701
129S1/SvImJ m 4.25 1.3831032204 6.978027939 1.521972061
A/J f 7.6666666667 1.1292990505 9.8940921516 5.4392411818
A/J m 9.2 1.2370851283 11.6400223665 6.7599776335
C57BL/6J f 2.9285714286 0.7392997687 4.3867636985 1.4703791587
C57BL/6J m 1.8181818182 0.8340426233 3.4632445621 0.1731190743
CAST/EiJ f 2.4 0.8747512831 4.1253563616 0.6746436384
CAST/EiJ m 4.125 0.9780016662 6.0540070549 2.1959929451
CC001/UncJ f 5.0 1.5970700332 8.1500553299 1.8499446701
CC001/UncJ m 2.5 1.9560033324 6.3580141099 -1.3580141099
CC002/UncJ f 1.5 1.3831032204 4.228027939 -1.228027939
CC002/UncJ m 1.5 1.3831032204 4.228027939 -1.228027939
CC003/UncJ f 2.0 1.9560033324 5.8580141099 -1.8580141099
CC003/UncJ m 2.0 1.5970700332 5.1500553299 -1.1500553299
CC005/TauUncJ f 3.0 1.5970700332 6.1500553299 -0.1500553299
CC005/TauUncJ m 1.0 1.9560033324 4.8580141099 -2.8580141099
CC006/TauUncJ f 2.0 1.9560033324 5.8580141099 -1.8580141099
CC006/TauUncJ m 1.5 1.9560033324 5.3580141099 -2.3580141099
CC009/UncJ f 1.5 1.9560033324 5.3580141099 -2.3580141099
CC009/UncJ m 1.0 1.9560033324 4.8580141099 -2.8580141099
CC011/UncJ f 3.0 1.5970700332 6.1500553299 -0.1500553299
CC011/UncJ m 1.6666666667 1.5970700332 4.8167219966 -1.4833886632
CC013/GeniUncJ f 6.5 1.9560033324 10.3580141099 2.6419858901
CC013/GeniUncJ m 4.0 1.9560033324 7.8580141099 0.1419858901
CC016/GeniUncJ f 1.3333333333 1.5970700332 4.4833886632 -1.8167219966
CC016/GeniUncJ m 1.25 1.3831032204 3.978027939 -1.478027939
CC017/UncJ f 1.0 1.9560033324 4.8580141099 -2.8580141099
CC017/UncJ m 1.6666666667 1.5970700332 4.8167219966 -1.4833886632
CC018/UncJ f 3.6666666667 1.5970700332 6.8167219966 0.5166113368
CC018/UncJ m 1.0 1.9560033324 4.8580141099 -2.8580141099
CC019/TauUncJ f 1.75 1.3831032204 4.478027939 -0.978027939
CC019/TauUncJ m 2.5 1.3831032204 5.228027939 -0.228027939
CC025/GeniUncJ f 5.6666666667 1.5970700332 8.8167219966 2.5166113368
CC025/GeniUncJ m 2.6666666667 1.5970700332 5.8167219966 -0.4833886632
CC027/GeniUncJ f 2.0 1.9560033324 5.8580141099 -1.8580141099
CC027/GeniUncJ m 4.75 1.3831032204 7.478027939 2.021972061
CC028/GeniUncJ f 10.0 1.5970700332 13.1500553299 6.8499446701
CC028/GeniUncJ m 3.6666666667 1.5970700332 6.8167219966 0.5166113368
CC030/GeniUncJ f 1.0 1.9560033324 4.8580141099 -2.8580141099
CC030/GeniUncJ m 2.0 1.9560033324 5.8580141099 -1.8580141099
CC033/GeniUncJ f 4.5 1.9560033324 8.3580141099 0.6419858901
CC033/GeniUncJ m 2.5 1.9560033324 6.3580141099 -1.3580141099
CC036/UncJ f 2.3333333333 1.5970700332 5.4833886632 -0.8167219966
CC036/UncJ m 3.0 1.5970700332 6.1500553299 -0.1500553299
CC037/TauUncJ f 3.5 1.9560033324 7.3580141099 -0.3580141099
CC037/TauUncJ m 2.0 1.5970700332 5.1500553299 -1.1500553299
CC040/TauUncJ f 1.6666666667 1.5970700332 4.8167219966 -1.4833886632
CC040/TauUncJ m 3.3333333333 1.5970700332 6.4833886632 0.1832780034
CC041/TauUncJ f 4.3333333333 1.5970700332 7.4833886632 1.1832780034
CC041/TauUncJ m 7.5 1.9560033324 11.3580141099 3.6419858901
CC043/GeniUncJ f 3.0 1.9560033324 6.8580141099 -0.8580141099
CC043/GeniUncJ m 5.0 1.9560033324 8.8580141099 1.1419858901
CC057/UncJ f 1.0 1.9560033324 4.8580141099 -2.8580141099
CC057/UncJ m 3.5 1.9560033324 7.3580141099 -0.3580141099
CC059/TauUncJ f 6.5 1.3831032204 9.228027939 3.771972061
CC059/TauUncJ m 7.6 1.2370851283 10.0400223665 5.1599776335
CC061/GeniUncJ f 5.6666666667 1.5970700332 8.8167219966 2.5166113368
CC061/GeniUncJ m 3.5 1.9560033324 7.3580141099 -0.3580141099
CC078/TauUncJ f 2.0 1.5970700332 5.1500553299 -1.1500553299
CC078/TauUncJ m 1.6666666667 1.5970700332 4.8167219966 -1.4833886632
CC084/TauJ f 5.5 1.9560033324 9.3580141099 1.6419858901
CC084/TauJ m 4.0 1.9560033324 7.8580141099 0.1419858901
NOD/ShiLtJ f 2.125 0.9780016662 4.0540070549 0.1959929451
NOD/ShiLtJ m 2.5454545455 0.8340426233 4.1905172893 0.9003918016
NZO/HlLtJ f 2.3333333333 1.5970700332 5.4833886632 -0.8167219966
NZO/HlLtJ m 1.0 1.9560033324 4.8580141099 -2.8580141099
PWK/PhJ f 1.5555555556 0.9220688136 3.3742408482 -0.2631297371
PWK/PhJ m 2.75 0.9780016662 4.6790070549 0.8209929451
WSB/EiJ f 3.5 0.9780016662 5.4290070549 1.5709929451
WSB/EiJ m 1.8333333333 1.1292990505 4.0607588182 -0.3940921516


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 8.625 1.0563625336 10.7085657548 6.5414342452
A/J both 8.4333333333 0.837510591 10.0852362844 6.7814303822
C57BL/6J both 2.3733766234 0.5572681683 3.4725304033 1.2742228435
CAST/EiJ both 3.2625 0.6560634623 4.5565172712 1.9684827288
CC001/UncJ both 3.75 1.2625947219 6.2403373995 1.2596626005
CC002/UncJ both 1.5 0.9780016662 3.4290070549 -0.4290070549
CC003/UncJ both 2.0 1.2625947219 4.4903373995 -0.4903373995
CC005/TauUncJ both 2.0 1.2625947219 4.4903373995 -0.4903373995
CC006/TauUncJ both 1.75 1.3831032204 4.478027939 -0.978027939
CC009/UncJ both 1.25 1.3831032204 3.978027939 -1.478027939
CC011/UncJ both 2.3333333333 1.1292990505 4.5607588182 0.1059078484
CC013/GeniUncJ both 5.25 1.3831032204 7.978027939 2.521972061
CC016/GeniUncJ both 1.2916666667 1.0563625336 3.3752324214 -0.7918990881
CC017/UncJ both 1.3333333333 1.2625947219 3.8236707328 -1.1570040662
CC018/UncJ both 2.3333333333 1.2625947219 4.8236707328 -0.1570040662
CC019/TauUncJ both 2.125 0.9780016662 4.0540070549 0.1959929451
CC025/GeniUncJ both 4.1666666667 1.1292990505 6.3940921516 1.9392411818
CC027/GeniUncJ both 3.375 1.1978025249 5.7375414974 1.0124585026
CC028/GeniUncJ both 6.8333333333 1.1292990505 9.0607588182 4.6059078484
CC030/GeniUncJ both 1.5 1.3831032204 4.228027939 -1.228027939
CC033/GeniUncJ both 3.5 1.3831032204 6.228027939 0.771972061
CC036/UncJ both 2.6666666667 1.1292990505 4.8940921516 0.4392411818
CC037/TauUncJ both 2.75 1.2625947219 5.2403373995 0.2596626005
CC040/TauUncJ both 2.5 1.1292990505 4.7274254849 0.2725745151
CC041/TauUncJ both 5.9166666667 1.2625947219 8.4070040662 3.4263292672
CC043/GeniUncJ both 4.0 1.3831032204 6.728027939 1.271972061
CC057/UncJ both 2.25 1.3831032204 4.978027939 -0.478027939
CC059/TauUncJ both 7.05 0.9278138462 8.8800167749 5.2199832251
CC061/GeniUncJ both 4.5833333333 1.2625947219 7.0736707328 2.0929959338
CC078/TauUncJ both 1.8333333333 1.1292990505 4.0607588182 -0.3940921516
CC084/TauJ both 4.75 1.3831032204 7.478027939 2.021972061
NOD/ShiLtJ both 2.3352272727 0.6426730033 3.6028332495 1.067621296
NZO/HlLtJ both 1.6666666667 1.2625947219 4.1570040662 -0.8236707328
PWK/PhJ both 2.1527777778 0.672067362 3.4783610845 0.8271944711
WSB/EiJ both 2.6666666667 0.7469611109 4.1399701409 1.1933631924




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA