Project measure / variable:   Golani1   PIBS

ID, description, units MPD:10927   PIBS   proportion of incursions beginning with stop, 30 min test, logit transformed   [logit(ratio)]  
Data set, strains Golani1   inbred   5 strains     sex: m     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Golani1 - proportion of incursions beginning with stop, 30 min test, logit transformed

SJL/JDBA/2JC3H/HeJC57BL/6JFVB/NJ logit(ratio) 0.00.10.20.30.40.50.60.70.8femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means0.339   logit(ratio)
Median of the strain means0.393   logit(ratio)
SD of the strain means± 0.191
Coefficient of variation (CV)0.563
Min–max range of strain means0.132   –   0.566   logit(ratio)
Mean sample size per strain45.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 4 6.3449 1.5862 112.2943 < 0.0001
Residuals 222 3.1359 0.0141


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
C3H/HeJ m 0.393 0.191   35 0.0323 0.486 0.0265, 0.793 0.28
C57BL/6J m 0.151 0.0793   63 0.00999 0.525 0.0253, 0.408 -0.99
DBA/2J m 0.455 0.132   60 0.0171 0.291 0.157, 0.778 0.6
FVB/NJ m 0.132 0.0692   36 0.0115 0.526 0.0216, 0.333 -1.09
SJL/J m 0.566 0.0979   33 0.017 0.173 0.385, 0.824 1.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ m 0.3927 0.0201 0.4323 0.3531
C57BL/6J m 0.1509 0.015 0.1804 0.1214
DBA/2J m 0.4554 0.0153 0.4856 0.4252
FVB/NJ m 0.1317 0.0198 0.1707 0.0926
SJL/J m 0.5655 0.0207 0.6063 0.5247




  GWAS USING LINEAR MIXED MODELS

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