Project measure / variable:   Tordoff3   lean_wt

ID, description, units MPD:10328   lean_wt   weight of lean tissue, head excluded   [g]  
Data set, strains Tordoff3   inbred w/CC7   40 strains     sex: both     age: 14-18wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Tordoff3 - weight of lean tissue, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested40 strains40 strains
Mean of the strain means15.3   g 19.1   g
Median of the strain means15.6   g 19.6   g
SD of the strain means± 3.67 ± 4.41
Coefficient of variation (CV)0.240 0.231
Min–max range of strain means8.18   –   22.8   g 9.75   –   26.7   g
Mean sample size per strain9.7   mice 9.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2970.6983 2970.6983 919.595 < 0.0001
strain 39 12140.3239 311.2904 96.3615 < 0.0001
sex:strain 39 350.0989 8.9769 2.7788 < 0.0001
Residuals 707 2283.9224 3.2304


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 15.2 1.11   10 0.35 0.0725 13.8, 16.6 -0.02
129S1/SvImJ m 18.4 0.897   9 0.299 0.0488 17.2, 19.5 -0.16
A/J f 15.9 1.63   10 0.515 0.103 13.7, 18.8 0.17
A/J m 18.1 2.42   10 0.765 0.134 13.4, 21.3 -0.23
AKR/J f 17.9 3.05   9 1.02 0.17 12.2, 21.3 0.72
AKR/J m 23.5 2.24   10 0.709 0.0953 20.0, 28.6 1.0
BALB/cByJ f 17.8 1.24   9 0.412 0.0694 16.4, 20.6 0.69
BALB/cByJ m 21.9 1.52   10 0.48 0.0692 19.5, 24.7 0.63
BTBR T+ Itpr3tf/J f 20.9 1.13   10 0.359 0.0543 18.5, 22.1 1.54
BTBR T+ Itpr3tf/J m 25.3 1.69   10 0.536 0.0669 22.6, 27.6 1.4
BUB/BnJ f 21.1 0.765   10 0.242 0.0363 19.9, 21.9 1.59
BUB/BnJ m 24.6 0.974   9 0.325 0.0396 23.3, 26.1 1.25
C3H/HeJ f 16.4 1.19   10 0.377 0.0726 14.2, 18.2 0.31
C3H/HeJ m 21.2 1.01   10 0.318 0.0474 20.1, 23.2 0.47
C57BL/10J f 17.3 0.792   10 0.25 0.0458 16.1, 18.8 0.55
C57BL/10J m 22.7 1.3   10 0.41 0.0571 20.2, 25.0 0.81
C57BL/6J f 15.6 2.31   9 0.771 0.148 10.8, 19.4 0.09
C57BL/6J m 21.2 1.38   9 0.461 0.0654 19.5, 23.9 0.47
C57BLKS/J f 15.7 0.929   10 0.294 0.0591 14.0, 16.9 0.12
C57BLKS/J m 19.7 1.52   8 0.537 0.0771 17.7, 21.7 0.13
C57BR/cdJ f 17.7 1.42   15 0.367 0.0804 15.5, 20.1 0.66
C57BR/cdJ m 22.8 1.68   13 0.467 0.0739 19.5, 25.2 0.84
C57L/J f 17.2 0.643   10 0.203 0.0373 15.9, 17.9 0.53
C57L/J m 22.1 1.94   10 0.614 0.088 18.1, 25.0 0.68
C58/J f 17.0 1.25   9 0.416 0.0737 15.2, 19.2 0.47
C58/J m 19.5 1.13   9 0.376 0.0577 17.8, 21.4 0.09
CAST/EiJ f 8.83 0.604   10 0.191 0.0684 8.0, 9.8 -1.75
CAST/EiJ m 11.1 0.661   10 0.209 0.0595 9.9, 12.2 -1.82
CBA/J f 17.0 1.03   10 0.326 0.0606 15.1, 18.7 0.47
CBA/J m 23.4 1.43   10 0.453 0.0614 20.8, 26.2 0.97
CE/J f 11.8 2.98   9 0.993 0.252 7.9, 16.3 -0.94
CE/J m 15.1 2.11   8 0.745 0.139 12.0, 17.4 -0.91
CZECHII/EiJ f 9.22 1.4   9 0.467 0.152 7.7, 11.2 -1.65
CZECHII/EiJ m 12.2 1.39   10 0.439 0.114 10.1, 14.3 -1.57
DBA/2J f 16.4 1.22   10 0.386 0.0744 14.2, 17.9 0.31
DBA/2J m 19.9 2.36   10 0.747 0.119 14.2, 23.4 0.18
FVB/NJ f 13.5 2.28   10 0.721 0.169 8.7, 17.1 -0.48
FVB/NJ m 19.3 1.28   10 0.404 0.0661 17.5, 21.5 0.04
I/LnJ f 14.1 0.686   10 0.217 0.0487 13.1, 15.4 -0.32
I/LnJ m 19.4 2.42   10 0.766 0.125 15.9, 24.7 0.07
JF1/MsJ f 10.7 0.713   10 0.225 0.0665 10.0, 12.2 -1.24
JF1/MsJ m 14.7 1.35   10 0.427 0.0917 11.7, 16.2 -1.0
KK/HlJ f 22.8 1.03   10 0.325 0.0452 21.2, 24.5 2.05
KK/HlJ m 25.5 2.07   10 0.653 0.081 21.7, 29.0 1.45
LP/J f 14.8 0.629   10 0.199 0.0427 13.8, 15.8 -0.13
LP/J m 20.2 2.14   10 0.677 0.106 16.9, 24.3 0.25
MA/MyJ f 15.3 0.969   8 0.343 0.0635 14.4, 17.0 0.01
MA/MyJ m 19.2 1.62   15 0.419 0.0845 15.3, 21.3 0.02
MOLF/EiJ f 9.0 0.495   9 0.165 0.055 8.3, 9.8 -1.71
MOLF/EiJ m 10.8 0.513   10 0.162 0.0475 10.1, 11.6 -1.89
MSM/MsJ f 8.18 0.437   10 0.138 0.0534 7.4, 8.9 -1.93
MSM/MsJ m 9.75 0.659   10 0.208 0.0676 8.9, 11.1 -2.12
NOD/ShiLtJ f 16.2 2.21   8 0.782 0.136 11.3, 18.7 0.25
NOD/ShiLtJ m 21.7 1.12   10 0.353 0.0515 20.0, 23.2 0.59
NON/ShiLtJ f 21.1 1.41   10 0.445 0.0669 18.9, 23.6 1.59
NON/ShiLtJ m 26.7 2.0   10 0.633 0.075 22.6, 29.9 1.72
NZB/BlNJ f 19.7 1.94   10 0.615 0.0988 16.3, 23.4 1.21
NZB/BlNJ m 24.8 2.56   10 0.81 0.103 22.2, 29.1 1.29
NZW/LacJ f 20.8 1.18   10 0.373 0.0567 19.1, 22.9 1.51
NZW/LacJ m 23.4 1.39   10 0.44 0.0595 20.7, 24.8 0.97
PERA/EiJ f 13.4 1.79   10 0.565 0.134 9.9, 15.3 -0.51
PERA/EiJ m 16.8 2.15   10 0.68 0.128 11.5, 19.4 -0.52
PL/J f 13.3 0.604   10 0.191 0.0455 12.3, 14.2 -0.54
PL/J m 17.4 2.52   10 0.796 0.145 10.5, 19.3 -0.39
PWK/PhJ f 11.6 0.606   10 0.192 0.0521 10.7, 12.6 -1.0
PWK/PhJ m 12.7 1.3   10 0.41 0.102 10.4, 15.1 -1.45
RIIIS/J f 17.4 6.08   10 1.92 0.348 11.3, 27.5 0.58
RIIIS/J m 20.3 4.88   10 1.54 0.24 14.1, 26.0 0.27
SEA/GnJ f 16.7 0.713   10 0.226 0.0428 15.7, 17.9 0.39
SEA/GnJ m 19.9 1.57   10 0.496 0.0789 16.8, 21.9 0.18
SJL/J f 14.9 1.12   10 0.353 0.0749 13.6, 17.5 -0.1
SJL/J m 19.3 2.86   10 0.903 0.148 12.5, 23.4 0.04
SM/J f 12.5 2.7   10 0.854 0.216 7.3, 15.1 -0.75
SM/J m 15.7 2.54   10 0.802 0.162 9.5, 18.1 -0.77
SPRET/EiJ f 10.4 0.845   9 0.282 0.0811 9.2, 11.7 -1.33
SPRET/EiJ m 13.2 0.665   5 0.297 0.0503 12.4, 14.2 -1.34
SWR/J f 13.9 1.45   10 0.458 0.104 12.4, 17.4 -0.37
SWR/J m 17.9 1.2   9 0.4 0.0671 15.9, 19.5 -0.27
WSB/EiJ f 11.4 1.3   10 0.412 0.114 10.0, 14.2 -1.05
WSB/EiJ m 13.1 1.24   10 0.392 0.0951 11.0, 15.6 -1.36


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 15.25 0.5684 16.3659 14.1341
129S1/SvImJ m 18.4 0.5991 19.5763 17.2237
A/J f 15.87 0.5684 16.9859 14.7541
A/J m 18.1 0.5684 19.2159 16.9841
AKR/J f 17.8889 0.5991 19.0651 16.7126
AKR/J m 23.52 0.5684 24.6359 22.4041
BALB/cByJ f 17.8111 0.5991 18.9874 16.6349
BALB/cByJ m 21.92 0.5684 23.0359 20.8041
BTBR T+ Itpr3tf/J f 20.89 0.5684 22.0059 19.7741
BTBR T+ Itpr3tf/J m 25.3 0.5684 26.4159 24.1841
BUB/BnJ f 21.07 0.5684 22.1859 19.9541
BUB/BnJ m 24.5889 0.5991 25.7651 23.4126
C3H/HeJ f 16.43 0.5684 17.5459 15.3141
C3H/HeJ m 21.21 0.5684 22.3259 20.0941
C57BL/10J f 17.3 0.5684 18.4159 16.1841
C57BL/10J m 22.68 0.5684 23.7959 21.5641
C57BL/6J f 15.6111 0.5991 16.7874 14.4349
C57BL/6J m 21.1556 0.5991 22.3318 19.9793
C57BLKS/J f 15.71 0.5684 16.8259 14.5941
C57BLKS/J m 19.6875 0.6355 20.9351 18.4399
C57BR/cdJ f 17.7067 0.4641 18.6178 16.7955
C57BR/cdJ m 22.7846 0.4985 23.7633 21.8059
C57L/J f 17.25 0.5684 18.3659 16.1341
C57L/J m 22.07 0.5684 23.1859 20.9541
C58/J f 16.9556 0.5991 18.1318 15.7793
C58/J m 19.5222 0.5991 20.6985 18.346
CAST/EiJ f 8.83 0.5684 9.9459 7.7141
CAST/EiJ m 11.12 0.5684 12.2359 10.0041
CBA/J f 16.99 0.5684 18.1059 15.8741
CBA/J m 23.35 0.5684 24.4659 22.2341
CE/J f 11.8111 0.5991 12.9874 10.6349
CE/J m 15.125 0.6355 16.3726 13.8774
CZECHII/EiJ f 9.2222 0.5991 10.3985 8.046
CZECHII/EiJ m 12.16 0.5684 13.2759 11.0441
DBA/2J f 16.4 0.5684 17.5159 15.2841
DBA/2J m 19.88 0.5684 20.9959 18.7641
FVB/NJ f 13.51 0.5684 14.6259 12.3941
FVB/NJ m 19.32 0.5684 20.4359 18.2041
I/LnJ f 14.08 0.5684 15.1959 12.9641
I/LnJ m 19.38 0.5684 20.4959 18.2641
JF1/MsJ f 10.72 0.5684 11.8359 9.6041
JF1/MsJ m 14.71 0.5684 15.8259 13.5941
KK/HlJ f 22.79 0.5684 23.9059 21.6741
KK/HlJ m 25.52 0.5684 26.6359 24.4041
LP/J f 14.75 0.5684 15.8659 13.6341
LP/J m 20.21 0.5684 21.3259 19.0941
MA/MyJ f 15.2625 0.6355 16.5101 14.0149
MA/MyJ m 19.1867 0.4641 20.0978 18.2755
MOLF/EiJ f 9.0 0.5991 10.1763 7.8237
MOLF/EiJ m 10.79 0.5684 11.9059 9.6741
MSM/MsJ f 8.18 0.5684 9.2959 7.0641
MSM/MsJ m 9.75 0.5684 10.8659 8.6341
NOD/ShiLtJ f 16.2125 0.6355 17.4601 14.9649
NOD/ShiLtJ m 21.65 0.5684 22.7659 20.5341
NON/ShiLtJ f 21.06 0.5684 22.1759 19.9441
NON/ShiLtJ m 26.69 0.5684 27.8059 25.5741
NZB/BlNJ f 19.67 0.5684 20.7859 18.5541
NZB/BlNJ m 24.76 0.5684 25.8759 23.6441
NZW/LacJ f 20.81 0.5684 21.9259 19.6941
NZW/LacJ m 23.38 0.5684 24.4959 22.2641
PERA/EiJ f 13.35 0.5684 14.4659 12.2341
PERA/EiJ m 16.81 0.5684 17.9259 15.6941
PL/J f 13.27 0.5684 14.3859 12.1541
PL/J m 17.35 0.5684 18.4659 16.2341
PWK/PhJ f 11.63 0.5684 12.7459 10.5141
PWK/PhJ m 12.73 0.5684 13.8459 11.6141
RIIIS/J f 17.45 0.5684 18.5659 16.3341
RIIIS/J m 20.32 0.5684 21.4359 19.2041
SEA/GnJ f 16.67 0.5684 17.7859 15.5541
SEA/GnJ m 19.87 0.5684 20.9859 18.7541
SJL/J f 14.89 0.5684 16.0059 13.7741
SJL/J m 19.31 0.5684 20.4259 18.1941
SM/J f 12.5 0.5684 13.6159 11.3841
SM/J m 15.7 0.5684 16.8159 14.5841
SPRET/EiJ f 10.4222 0.5991 11.5985 9.246
SPRET/EiJ m 13.22 0.8038 14.7981 11.6419
SWR/J f 13.88 0.5684 14.9959 12.7641
SWR/J m 17.8667 0.5991 19.0429 16.6904
WSB/EiJ f 11.43 0.5684 12.5459 10.3141
WSB/EiJ m 13.05 0.5684 14.1659 11.9341


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 16.825 0.4129 17.6357 16.0143
A/J both 16.985 0.4019 17.7741 16.1959
AKR/J both 20.7044 0.4129 21.5151 19.8938
BALB/cByJ both 19.8656 0.4129 20.6762 19.0549
BTBR T+ Itpr3tf/J both 23.095 0.4019 23.8841 22.3059
BUB/BnJ both 22.8294 0.4129 23.6401 22.0188
C3H/HeJ both 18.82 0.4019 19.6091 18.0309
C57BL/10J both 19.99 0.4019 20.7791 19.2009
C57BL/6J both 18.3833 0.4236 19.2151 17.5516
C57BLKS/J both 17.6988 0.4263 18.5357 16.8618
C57BR/cdJ both 20.2456 0.3405 20.9142 19.5771
C57L/J both 19.66 0.4019 20.4491 18.8709
C58/J both 18.2389 0.4236 19.0706 17.4072
CAST/EiJ both 9.975 0.4019 10.7641 9.1859
CBA/J both 20.17 0.4019 20.9591 19.3809
CE/J both 13.4681 0.4367 14.3254 12.6107
CZECHII/EiJ both 10.6911 0.4129 11.5018 9.8804
DBA/2J both 18.14 0.4019 18.9291 17.3509
FVB/NJ both 16.415 0.4019 17.2041 15.6259
I/LnJ both 16.73 0.4019 17.5191 15.9409
JF1/MsJ both 12.715 0.4019 13.5041 11.9259
KK/HlJ both 24.155 0.4019 24.9441 23.3659
LP/J both 17.48 0.4019 18.2691 16.6909
MA/MyJ both 17.2246 0.3934 17.997 16.4521
MOLF/EiJ both 9.895 0.4129 10.7057 9.0843
MSM/MsJ both 8.965 0.4019 9.7541 8.1759
NOD/ShiLtJ both 18.9312 0.4263 19.7682 18.0943
NON/ShiLtJ both 23.875 0.4019 24.6641 23.0859
NZB/BlNJ both 22.215 0.4019 23.0041 21.4259
NZW/LacJ both 22.095 0.4019 22.8841 21.3059
PERA/EiJ both 15.08 0.4019 15.8691 14.2909
PL/J both 15.31 0.4019 16.0991 14.5209
PWK/PhJ both 12.18 0.4019 12.9691 11.3909
RIIIS/J both 18.885 0.4019 19.6741 18.0959
SEA/GnJ both 18.27 0.4019 19.0591 17.4809
SJL/J both 17.1 0.4019 17.8891 16.3109
SM/J both 14.1 0.4019 14.8891 13.3109
SPRET/EiJ both 11.8211 0.5013 12.8052 10.837
SWR/J both 15.8733 0.4129 16.684 15.0627
WSB/EiJ both 12.24 0.4019 13.0291 11.4509




  GWAS USING LINEAR MIXED MODELS