Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:94058246-96228257

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477 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Carcdq1 8 39709256 to 94689598 54980342 QTL cardiac collagen deposition QTL 1
Q 8 68123250 to 94173804 26050554 heritable phenotypic marker quinky
Ogfod1 8 94037198 to 94067921 30723 + protein coding gene 2-oxoglutarate and iron-dependent oxygenase domain containing 1
Bbs2 8 94067954 to 94098928 30974 - protein coding gene Bardet-Biedl syndrome 2 (human)
Tssr82479 8 94070206 to 94070248 42 - TSS region transcription start site region 82479
D8Mit209 8 94097044 to 94097187 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 209
Cpgi20836 8 94098138 to 94098879 741 CpG island CpG island 20836
Tssr82480 8 94098342 to 94098388 46 - TSS region transcription start site region 82480
Tssr82481 8 94098431 to 94098442 11 - TSS region transcription start site region 82481
Tssr82482 8 94098490 to 94098534 44 - TSS region transcription start site region 82482
Gm39226 8 94099542 to 94100572 1030 + lncRNA gene predicted gene, 39226
Tssr2647 8 94102277 to 94102284 7 + TSS region transcription start site region 2647
Tssr78817 8 94137197 to 94137213 16 + TSS region transcription start site region 78817
Mt4 8 94137204 to 94139031 1827 + protein coding gene metallothionein 4
Cpgi20837 8 94152483 to 94152926 443 CpG island CpG island 20837
Mt3 8 94152607 to 94154146 1539 + protein coding gene metallothionein 3
Tssr78818 8 94152735 to 94152751 16 + TSS region transcription start site region 78818
Tssr78819 8 94152992 to 94153004 12 + TSS region transcription start site region 78819
Tssr78820 8 94153022 to 94153033 11 + TSS region transcription start site region 78820
Tssr78821 8 94153895 to 94153911 16 + TSS region transcription start site region 78821
Tssr82483 8 94153951 to 94153992 41 - TSS region transcription start site region 82483
Tssr82484 8 94154006 to 94154021 15 - TSS region transcription start site region 82484
Tssr82485 8 94154144 to 94154146 2 - TSS region transcription start site region 82485
D8Jpk2 8 94155681 to 94155813 132 DNA segment DNA segment, Chr 8, Japan, Kominami 2
Gm39227 8 94166124 to 94172524 6400 - lncRNA gene predicted gene, 39227
Gm45774 8 94170748 to 94173412 2664 - antisense lncRNA gene predicted gene 45774
Cpgi20838 8 94172065 to 94173330 1265 CpG island CpG island 20838
Mt2 8 94172664 to 94173568 904 + protein coding gene metallothionein 2
Tssr78822 8 94172774 to 94172792 18 + TSS region transcription start site region 78822
Tssr78823 8 94173353 to 94173394 41 + TSS region transcription start site region 78823
Tssr82486 8 94173464 to 94173494 30 - TSS region transcription start site region 82486
D8Mit15 8 94173625 to 94173804 179 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 15
Tssr82487 8 94178765 to 94178803 38 - TSS region transcription start site region 82487
Cpgi20839 8 94178799 to 94179550 751 CpG island CpG island 20839
Mt1 8 94179084 to 94180327 1243 + protein coding gene metallothionein 1
Tssr78824 8 94179234 to 94179248 14 + TSS region transcription start site region 78824
Tssr78825 8 94179805 to 94179861 56 + TSS region transcription start site region 78825
Tssr78826 8 94180077 to 94180084 7 + TSS region transcription start site region 78826
Tssr78827 8 94180093 to 94180203 110 + TSS region transcription start site region 78827
Tssr82488 8 94180154 to 94180165 11 - TSS region transcription start site region 82488
Cpgi20840 8 94180168 to 94180357 189 CpG island CpG island 20840
Tssr78828 8 94180217 to 94180256 39 + TSS region transcription start site region 78828
Tssr82489 8 94180226 to 94180255 29 - TSS region transcription start site region 82489
Tssr82490 8 94180257 to 94180291 34 - TSS region transcription start site region 82490
Tssr82491 8 94180318 to 94180326 8 - TSS region transcription start site region 82491
Cpgi20841 8 94183265 to 94183520 255 CpG island CpG island 20841
Gm39228 8 94183289 to 94184969 1680 + lincRNA gene predicted gene, 39228
Cpgi20842 8 94186577 to 94186856 279 CpG island CpG island 20842
Cpgi20843 8 94191297 to 94191488 191 CpG island CpG island 20843
Tssr82492 8 94194805 to 94194811 6 - TSS region transcription start site region 82492
Cpgi20844 8 94214249 to 94215136 887 CpG island CpG island 20844
Nup93 8 94214540 to 94315066 100526 + protein coding gene nucleoporin 93
Tssr78829 8 94214547 to 94214558 11 + TSS region transcription start site region 78829
Tssr78830 8 94214567 to 94214608 41 + TSS region transcription start site region 78830
Tssr78831 8 94222947 to 94222949 2 + TSS region transcription start site region 78831
Rpl10-ps5 8 94222993 to 94223634 641 + pseudogene ribosomal protein L10, pseudogene 5
Tssr78832 8 94227534 to 94227611 77 + TSS region transcription start site region 78832
Tssr78833 8 94227652 to 94227673 21 + TSS region transcription start site region 78833
Tssr78834 8 94266825 to 94266838 13 + TSS region transcription start site region 78834
Tssr78835 8 94267086 to 94267101 15 + TSS region transcription start site region 78835
Tssr78836 8 94267105 to 94267151 46 + TSS region transcription start site region 78836
Gm45804 8 94273426 to 94276860 3434 + unclassified gene predicted gene 45804
C78859 8 94322158 to 94328100 5942 + lincRNA gene expressed sequence C78859
Mir138-2 8 94324311 to 94324381 70 + miRNA gene microRNA 138-2
Slc12a3 8 94329201 to 94366214 37013 + protein coding gene solute carrier family 12, member 3
Tssr78837 8 94329201 to 94329217 16 + TSS region transcription start site region 78837
Tssr78838 8 94329626 to 94329653 27 + TSS region transcription start site region 78838
Tssr2648 8 94340520 to 94340531 11 + TSS region transcription start site region 2648
Tssr2649 8 94340562 to 94340570 8 + TSS region transcription start site region 2649
Tssr78839 8 94347406 to 94347419 13 + TSS region transcription start site region 78839
Tssr78840 8 94354996 to 94355003 7 + TSS region transcription start site region 78840
Tssr78841 8 94355046 to 94355089 43 + TSS region transcription start site region 78841
Tssr2650 8 94355159 to 94355168 9 + TSS region transcription start site region 2650
Tssr2651 8 94355192 to 94355195 3 + TSS region transcription start site region 2651
Tssr78842 8 94355797 to 94355799 2 + TSS region transcription start site region 78842
Tssr78843 8 94355889 to 94355909 20 + TSS region transcription start site region 78843
Tssr78844 8 94358137 to 94358155 18 + TSS region transcription start site region 78844
Tssr82493 8 94364029 to 94364035 6 - TSS region transcription start site region 82493
Tssr78845 8 94365848 to 94365860 12 + TSS region transcription start site region 78845
Tssr78846 8 94365894 to 94365900 6 + TSS region transcription start site region 78846
Tssr78847 8 94366099 to 94366113 14 + TSS region transcription start site region 78847
Tssr82494 8 94375807 to 94375820 13 - TSS region transcription start site region 82494
Tssr78848 8 94377852 to 94377864 12 + TSS region transcription start site region 78848
Tssr78849 8 94377868 to 94377881 13 + TSS region transcription start site region 78849
Gm15889 8 94377872 to 94380317 2445 + lincRNA gene predicted gene 15889
Tssr78850 8 94377882 to 94377893 11 + TSS region transcription start site region 78850
Tssr78851 8 94377896 to 94377907 11 + TSS region transcription start site region 78851
Tssr78852 8 94377911 to 94377938 27 + TSS region transcription start site region 78852
Gm15890 8 94379184 to 94386972 7788 - antisense lncRNA gene predicted gene 15890
Cpgi20845 8 94385925 to 94387533 1608 CpG island CpG island 20845
Tssr78853 8 94386167 to 94386174 7 + TSS region transcription start site region 78853
Tssr78854 8 94386178 to 94386206 28 + TSS region transcription start site region 78854
Herpud1 8 94386438 to 94395377 8939 + protein coding gene homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
Tssr78855 8 94386467 to 94386468 1 + TSS region transcription start site region 78855
Tssr78856 8 94386486 to 94386509 23 + TSS region transcription start site region 78856
Tssr78857 8 94386510 to 94386519 9 + TSS region transcription start site region 78857
Tssr78858 8 94386523 to 94386534 11 + TSS region transcription start site region 78858
Tssr78859 8 94388193 to 94388198 5 + TSS region transcription start site region 78859
Tssr78860 8 94393544 to 94393548 4 + TSS region transcription start site region 78860
Tssr78861 8 94394814 to 94394827 13 + TSS region transcription start site region 78861
Ap3s1-ps2 8 94405211 to 94405789 578 + pseudogene adaptor-related protein complex 3, sigma 1 subunit, pseudogene 2
Tssr78862 8 94415457 to 94415488 31 + TSS region transcription start site region 78862
9330175E14Rik 8 94433127 to 94435103 1976 - lincRNA gene RIKEN cDNA 9330175E14 gene
Cpgi20846 8 94433871 to 94434581 710 CpG island CpG island 20846
Tssr82495 8 94434142 to 94434170 28 - TSS region transcription start site region 82495
Tssr82496 8 94434259 to 94434297 38 - TSS region transcription start site region 82496
Tssr78863 8 94434343 to 94434354 11 + TSS region transcription start site region 78863
Nlrc5 8 94434356 to 94527272 92916 + protein coding gene NLR family, CARD domain containing 5
Tssr78864 8 94434378 to 94434403 25 + TSS region transcription start site region 78864
Tssr78865 8 94434723 to 94434744 21 + TSS region transcription start site region 78865
Tssr78866 8 94446332 to 94446334 2 + TSS region transcription start site region 78866
Tssr78867 8 94449667 to 94449672 5 + TSS region transcription start site region 78867
Tssr78868 8 94449769 to 94449796 27 + TSS region transcription start site region 78868
Tssr78869 8 94450202 to 94450213 11 + TSS region transcription start site region 78869
Tssr78870 8 94460471 to 94460475 4 + TSS region transcription start site region 78870
Tssr78871 8 94460525 to 94460534 9 + TSS region transcription start site region 78871
Tssr78872 8 94460776 to 94460779 3 + TSS region transcription start site region 78872
Tssr78873 8 94478644 to 94478661 17 + TSS region transcription start site region 78873
Tssr78874 8 94478694 to 94478722 28 + TSS region transcription start site region 78874
Tssr78875 8 94479876 to 94479907 31 + TSS region transcription start site region 78875
Tssr78876 8 94480584 to 94480597 13 + TSS region transcription start site region 78876
Tssr78877 8 94480681 to 94480692 11 + TSS region transcription start site region 78877
Tssr78878 8 94480698 to 94480712 14 + TSS region transcription start site region 78878
D8Mit311 8 94485588 to 94485710 122 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 311
Mir7072 8 94505046 to 94505105 59 + miRNA gene microRNA 7072
Tssr78879 8 94513305 to 94513322 17 + TSS region transcription start site region 78879
Tssr78880 8 94513330 to 94513341 11 + TSS region transcription start site region 78880
Tssr2652 8 94524844 to 94524854 10 + TSS region transcription start site region 2652
Tssr78881 8 94524872 to 94524882 10 + TSS region transcription start site region 78881
Tssr78882 8 94526814 to 94526818 4 + TSS region transcription start site region 78882
Tssr78883 8 94531541 to 94531548 7 + TSS region transcription start site region 78883
Cpgi20847 8 94532439 to 94533751 1312 CpG island CpG island 20847
Tssr82497 8 94532905 to 94532917 12 - TSS region transcription start site region 82497
Tssr82498 8 94532918 to 94532932 14 - TSS region transcription start site region 82498
Cpne2 8 94532990 to 94570531 37541 + protein coding gene copine II
Tssr78884 8 94532991 to 94532996 5 + TSS region transcription start site region 78884
Tssr78885 8 94533009 to 94533074 65 + TSS region transcription start site region 78885
Tssr78886 8 94533103 to 94533114 11 + TSS region transcription start site region 78886
Tssr78887 8 94544172 to 94544185 13 + TSS region transcription start site region 78887
Gm38555 8 94550579 to 94568584 18005 - lncRNA gene predicted gene, 38555
Tssr78888 8 94555970 to 94555989 19 + TSS region transcription start site region 78888
D8Mit182 8 94559987 to 94560125 138 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 182
Tssr78889 8 94562373 to 94562376 3 + TSS region transcription start site region 78889
Tssr78890 8 94564700 to 94564718 18 + TSS region transcription start site region 78890
Tssr78891 8 94568320 to 94568333 13 + TSS region transcription start site region 78891
Tssr78892 8 94568337 to 94568358 21 + TSS region transcription start site region 78892
Tssr78893 8 94568360 to 94568375 15 + TSS region transcription start site region 78893
Tssr78894 8 94568421 to 94568435 14 + TSS region transcription start site region 78894
Tssr78895 8 94570170 to 94570183 13 + TSS region transcription start site region 78895
Cpgi20848 8 94574252 to 94574454 202 CpG island CpG island 20848
Fam192a 8 94574940 to 94601726 26786 - protein coding gene family with sequence similarity 192, member A
Tssr82499 8 94588079 to 94588093 14 - TSS region transcription start site region 82499
Tssr82500 8 94591383 to 94591388 5 - TSS region transcription start site region 82500
Tssr82501 8 94599706 to 94599714 8 - TSS region transcription start site region 82501
Cpgi20849 8 94600936 to 94602871 1935 CpG island CpG island 20849
Tssr82502 8 94601542 to 94601556 14 - TSS region transcription start site region 82502
Tssr82503 8 94601614 to 94601630 16 - TSS region transcription start site region 82503
Tssr82504 8 94601632 to 94601708 76 - TSS region transcription start site region 82504
Tssr82505 8 94601720 to 94601739 19 - TSS region transcription start site region 82505
Tssr78896 8 94601928 to 94602003 75 + TSS region transcription start site region 78896
Rspry1 8 94601941 to 94660276 58335 + protein coding gene ring finger and SPRY domain containing 1
Tssr78897 8 94602012 to 94602029 17 + TSS region transcription start site region 78897
Tssr78898 8 94602085 to 94602111 26 + TSS region transcription start site region 78898
Gm45797 8 94610777 to 94612697 1920 + unclassified gene predicted gene 45797
Gm18002 8 94640942 to 94641524 582 + pseudogene predicted gene, 18002
Cpgi20850 8 94666519 to 94667346 827 CpG island CpG island 20850
Arl2bp 8 94666600 to 94674425 7825 + protein coding gene ADP-ribosylation factor-like 2 binding protein
Tssr78899 8 94666614 to 94666650 36 + TSS region transcription start site region 78899
Tssr78900 8 94666652 to 94666676 24 + TSS region transcription start site region 78900
Tssr78901 8 94666700 to 94666711 11 + TSS region transcription start site region 78901
Tssr78902 8 94666722 to 94666769 47 + TSS region transcription start site region 78902
Tssr78903 8 94666776 to 94666787 11 + TSS region transcription start site region 78903
Tssr82506 8 94666949 to 94666987 38 - TSS region transcription start site region 82506
Tssr78904 8 94667082 to 94667128 46 + TSS region transcription start site region 78904
Tssr82507 8 94667128 to 94667137 9 - TSS region transcription start site region 82507
Tssr82508 8 94667203 to 94667216 13 - TSS region transcription start site region 82508
Pllp 8 94674895 to 94696242 21347 - protein coding gene plasma membrane proteolipid
Gm45767 8 94675606 to 94680166 4560 + antisense lncRNA gene predicted gene 45767
Tssr82509 8 94678725 to 94678739 14 - TSS region transcription start site region 82509
Cpgi20851 8 94695482 to 94696375 893 CpG island CpG island 20851
Tssr2653 8 94696178 to 94696200 22 - TSS region transcription start site region 2653
Tssr82510 8 94696223 to 94696287 64 - TSS region transcription start site region 82510
Gm22846 8 94698016 to 94698285 269 - unclassified non-coding RNA gene predicted gene, 22846
Cpgi20852 8 94703534 to 94703717 183 CpG island CpG island 20852
n-TLcag5 8 94703631 to 94703713 82 + tRNA gene nuclear encoded tRNA leucine 5 (anticodon CAG)
n-TLcag4 8 94704004 to 94704086 82 - tRNA gene nuclear encoded tRNA leucine 4 (anticodon CAG)
Cpgi20853 8 94704230 to 94704760 530 CpG island CpG island 20853
Tssr82511 8 94711400 to 94711422 22 - TSS region transcription start site region 82511
D8Mit210 8 94743583 to 94743730 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 210
Tssr78905 8 94745677 to 94745693 16 + TSS region transcription start site region 78905
Ccl22 8 94745684 to 94751388 5704 + protein coding gene chemokine (C-C motif) ligand 22
Tssr78906 8 94746938 to 94746950 12 + TSS region transcription start site region 78906
Tssr78907 8 94749274 to 94749318 44 + TSS region transcription start site region 78907
Tssr78908 8 94749846 to 94749853 7 + TSS region transcription start site region 78908
Tssr78909 8 94749889 to 94749896 7 + TSS region transcription start site region 78909
Tssr2654 8 94749929 to 94749930 1 + TSS region transcription start site region 2654
Tssr78910 8 94750006 to 94750017 11 + TSS region transcription start site region 78910
Tssr78911 8 94750021 to 94750033 12 + TSS region transcription start site region 78911
Tssr78912 8 94750268 to 94750285 17 + TSS region transcription start site region 78912
Tssr78913 8 94750448 to 94750457 9 + TSS region transcription start site region 78913