Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:91075090-95465093

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695 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Capsq4 8 36163000 to 92728652 56565652 QTL capsaicin sensitivity related QTL 4
Carcdq1 8 39709256 to 94689598 54980342 QTL cardiac collagen deposition QTL 1
Q 8 68123250 to 94173804 26050554 heritable phenotypic marker quinky
nmf242 8 84220392 to 92685497 8465105 heritable phenotypic marker neuroscience mutagenesis facility, 242
Fts 8 90905517 to 92728652 1823135 heritable phenotypic marker fused toes
Rbl2 8 91070057 to 91123844 53787 + protein coding gene RB transcriptional corepressor like 2
Tssr78715 8 91082169 to 91082189 20 + TSS region transcription start site region 78715
Tssr78716 8 91082241 to 91082270 29 + TSS region transcription start site region 78716
Tssr78717 8 91082459 to 91082486 27 + TSS region transcription start site region 78717
Tssr78718 8 91106389 to 91106414 25 + TSS region transcription start site region 78718
Tssr78719 8 91106521 to 91106545 24 + TSS region transcription start site region 78719
Tssr78720 8 91106554 to 91106561 7 + TSS region transcription start site region 78720
Tssr78721 8 91106563 to 91106595 32 + TSS region transcription start site region 78721
Aktip 8 91107639 to 91135494 27855 - protein coding gene thymoma viral proto-oncogene 1 interacting protein
Tssr78722 8 91112071 to 91112090 19 + TSS region transcription start site region 78722
Gm45464 8 91113762 to 91116671 2909 - sense intronic lncRNA gene predicted gene 45464
Tssr78723 8 91115716 to 91115727 11 + TSS region transcription start site region 78723
Tssr2641 8 91117654 to 91117659 5 - TSS region transcription start site region 2641
Tssr82404 8 91124024 to 91124028 4 - TSS region transcription start site region 82404
Cpgi20808 8 91133418 to 91134480 1062 CpG island CpG island 20808
Tssr82405 8 91133949 to 91134022 73 - TSS region transcription start site region 82405
Tssr82406 8 91134027 to 91134038 11 - TSS region transcription start site region 82406
Tssr82407 8 91135659 to 91135668 9 - TSS region transcription start site region 82407
Tssr82408 8 91135687 to 91135699 12 - TSS region transcription start site region 82408
Tssr82409 8 91135702 to 91135713 11 - TSS region transcription start site region 82409
Gm45665 8 91152207 to 91152374 167 + pseudogene predicted gene 45665
Gm8489 8 91157886 to 91158545 659 + pseudogene predicted gene 8489
Gm45666 8 91160516 to 91171180 10664 + antisense lncRNA gene predicted gene 45666
Gm23408 8 91184919 to 91185183 264 - unclassified non-coding RNA gene predicted gene, 23408
Cpgi20809 8 91190845 to 91191057 212 CpG island CpG island 20809
Gm36243 8 91210570 to 91224667 14097 + antisense lncRNA gene predicted gene, 36243
Rpgrip1l 8 91217030 to 91313262 96232 - protein coding gene Rpgrip1-like
Gm18603 8 91249617 to 91250142 525 - pseudogene predicted gene, 18603
Gm45662 8 91258438 to 91260535 2097 - unclassified gene predicted gene 45662
Gm36163 8 91273747 to 91300367 26620 + lncRNA gene predicted gene, 36163
Gm45428 8 91305967 to 91307755 1788 - unclassified gene predicted gene 45428
Cpgi20810 8 91312966 to 91313801 835 CpG island CpG island 20810
Tssr82410 8 91313223 to 91313279 56 - TSS region transcription start site region 82410
Tssr78724 8 91313245 to 91313246 1 + TSS region transcription start site region 78724
Tssr78725 8 91313280 to 91313293 13 + TSS region transcription start site region 78725
Tssr78726 8 91313301 to 91313306 5 + TSS region transcription start site region 78726
Tssr82411 8 91313376 to 91313388 12 - TSS region transcription start site region 82411
Tssr2642 8 91313432 to 91313463 31 + TSS region transcription start site region 2642
Fto 8 91313525 to 91668439 354914 + protein coding gene fat mass and obesity associated
Tssr78727 8 91313529 to 91313557 28 + TSS region transcription start site region 78727
Tssr78728 8 91313560 to 91313575 15 + TSS region transcription start site region 78728
Tssr78729 8 91313586 to 91313591 5 + TSS region transcription start site region 78729
Tssr78730 8 91318117 to 91318119 2 + TSS region transcription start site region 78730
Tssr78731 8 91363261 to 91363266 5 + TSS region transcription start site region 78731
B130011D17Rik 8 91365668 to 91367265 1597 unclassified gene RIKEN cDNA B130011D17 gene
Tssr78732 8 91384692 to 91384710 18 + TSS region transcription start site region 78732
Tssr78733 8 91387355 to 91387359 4 + TSS region transcription start site region 78733
Gm45427 8 91390693 to 91391945 1252 - unclassified gene predicted gene 45427
Hfhl2 8 91441742 to 91441742 0 QTL high-frequency hearing loss 2
Gm45292 8 91450306 to 91452512 2206 + unclassified gene predicted gene 45292
4831440D22Rik 8 91450612 to 91467685 17073 - antisense lncRNA gene RIKEN cDNA 4831440D22 gene
Tssr78734 8 91467695 to 91467725 30 + TSS region transcription start site region 78734
Gm45289 8 91493019 to 91495595 2576 + unclassified gene predicted gene 45289
Gm45290 8 91528835 to 91532724 3889 - unclassified gene predicted gene 45290
Gm45294 8 91579288 to 91581389 2101 + unclassified gene predicted gene 45294
Tssr78735 8 91619227 to 91619230 3 + TSS region transcription start site region 78735
Gm3235 8 91621448 to 91629729 8281 - antisense lncRNA gene predicted gene 3235
D8Mit196 8 91628533 to 91628620 87 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 196
Tssr82412 8 91629707 to 91629734 27 - TSS region transcription start site region 82412
Tssr78736 8 91631062 to 91631070 8 + TSS region transcription start site region 78736
Gm45293 8 91633079 to 91634890 1811 + unclassified gene predicted gene 45293
Tssr82413 8 91656708 to 91656720 12 - TSS region transcription start site region 82413
Gm45295 8 91670852 to 91671897 1045 - unclassified gene predicted gene 45295
Gm9619 8 91688374 to 91689135 761 - pseudogene predicted gene 9619
Gm2875 8 91689753 to 91690112 359 + pseudogene predicted gene 2875
Tssr82414 8 91708499 to 91708505 6 - TSS region transcription start site region 82414
Gm36325 8 91712698 to 91715184 2486 - lincRNA gene predicted gene, 36325
Cpgi20811 8 91712869 to 91713125 256 CpG island CpG island 20811
Tssr82415 8 91713328 to 91713350 22 - TSS region transcription start site region 82415
D8Mit309 8 91757909 to 91758024 115 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 309
Tssr2643 8 91759147 to 91759152 5 + TSS region transcription start site region 2643
Tssr78737 8 91759176 to 91759183 7 + TSS region transcription start site region 78737
Gm36380 8 91788514 to 91793790 5276 - lincRNA gene predicted gene, 36380
Gm39222 8 91795574 to 91797743 2169 - lncRNA gene predicted gene, 39222
Cpgi20812 8 91797651 to 91798067 416 CpG island CpG island 20812
Irx3 8 91798511 to 91801654 3143 - protein coding gene Iroquois related homeobox 3
Cpgi20813 8 91799330 to 91802515 3185 CpG island CpG island 20813
Tssr82416 8 91800281 to 91800294 13 - TSS region transcription start site region 82416
Tssr78738 8 91800406 to 91800429 23 + TSS region transcription start site region 78738
Tssr82417 8 91801374 to 91801389 15 - TSS region transcription start site region 82417
Tssr82418 8 91801422 to 91801467 45 - TSS region transcription start site region 82418
Tssr82419 8 91801475 to 91801486 11 - TSS region transcription start site region 82419
Tssr82420 8 91801547 to 91801560 13 - TSS region transcription start site region 82420
Tssr82421 8 91801587 to 91801611 24 - TSS region transcription start site region 82421
Tssr2644 8 91801617 to 91801637 20 - TSS region transcription start site region 2644
Tssr82422 8 91801880 to 91801892 12 - TSS region transcription start site region 82422
Tssr82423 8 91801900 to 91801914 14 - TSS region transcription start site region 82423
Tssr82424 8 91801915 to 91801940 25 - TSS region transcription start site region 82424
Tssr82425 8 91801948 to 91801970 22 - TSS region transcription start site region 82425
Irx3os 8 91804234 to 91807377 3143 + antisense lncRNA gene iroquois homeobox 3, opposite strand
Cpgi20814 8 91804307 to 91804796 489 CpG island CpG island 20814
Cpgi20815 8 91805272 to 91805751 479 CpG island CpG island 20815
Cpgi20816 8 91806244 to 91806719 475 CpG island CpG island 20816
Gm39223 8 91822584 to 91830637 8053 + lncRNA gene predicted gene, 39223
Gm28511 8 91865871 to 91872995 7124 + lincRNA gene predicted gene 28511
Cpgi20817 8 91872703 to 91872897 194 CpG island CpG island 20817
Gm28515 8 91907565 to 91913066 5501 - lincRNA gene predicted gene 28515
D8Mit147 8 91954072 to 91954211 139 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 147
Gm36670 8 91974263 to 91991849 17586 - lincRNA gene predicted gene, 36670
Gm36843 8 91997594 to 92009006 11412 + lincRNA gene predicted gene, 36843
Gm28516 8 92024442 to 92038438 13996 + lincRNA gene predicted gene 28516
Gm24254 8 92039917 to 92040020 103 + snRNA gene predicted gene, 24254
Tssr82426 8 92059691 to 92059695 4 - TSS region transcription start site region 82426
D8Mit1006 8 92070043 to 92070192 149 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 1006
Tssr78739 8 92097311 to 92097317 6 + TSS region transcription start site region 78739
Gm45332 8 92152096 to 92158266 6170 - lincRNA gene predicted gene 45332
Tssr82427 8 92158274 to 92158283 9 - TSS region transcription start site region 82427
Gm45335 8 92172587 to 92189124 16537 + lincRNA gene predicted gene 45335
Tssr78740 8 92189429 to 92189440 11 + TSS region transcription start site region 78740
Tssr78741 8 92189450 to 92189466 16 + TSS region transcription start site region 78741
Tssr78742 8 92193362 to 92193367 5 + TSS region transcription start site region 78742
Gm45334 8 92233125 to 92247959 14834 + lincRNA gene predicted gene 45334
Tssr2645 8 92251253 to 92251259 6 - TSS region transcription start site region 2645
Crnde 8 92326033 to 92356120 30087 - lncRNA gene colorectal neoplasia differentially expressed (non-protein coding)
Gm21817 8 92336668 to 92339250 2582 - lincRNA gene predicted gene, 21817
Tssr82428 8 92354580 to 92354604 24 - TSS region transcription start site region 82428
Tssr82429 8 92355495 to 92355506 11 - TSS region transcription start site region 82429
Cpgi20818 8 92355587 to 92360909 5322 CpG island CpG island 20818
Tssr82430 8 92355836 to 92355852 16 - TSS region transcription start site region 82430
Tssr2646 8 92355856 to 92355879 23 - TSS region transcription start site region 2646
Tssr82431 8 92355885 to 92355915 30 - TSS region transcription start site region 82431
Tssr78743 8 92355963 to 92356009 46 + TSS region transcription start site region 78743
Tssr82432 8 92356103 to 92356119 16 - TSS region transcription start site region 82432
Tssr82433 8 92356122 to 92356143 21 - TSS region transcription start site region 82433
Tssr82434 8 92357582 to 92357605 23 - TSS region transcription start site region 82434
Tssr78744 8 92357740 to 92357751 11 + TSS region transcription start site region 78744
Tssr78745 8 92357787 to 92357801 14 + TSS region transcription start site region 78745
Irx5 8 92357796 to 92361456 3660 + protein coding gene Iroquois homeobox 5
Tssr78746 8 92357834 to 92357891 57 + TSS region transcription start site region 78746
Tssr78747 8 92357973 to 92357988 15 + TSS region transcription start site region 78747
Tssr78748 8 92358003 to 92358011 8 + TSS region transcription start site region 78748
Tssr78749 8 92358308 to 92358327 19 + TSS region transcription start site region 78749
Cpgi20819 8 92363370 to 92363678 308 CpG island CpG island 20819
Cpgi20820 8 92365502 to 92365889 387 CpG island CpG island 20820
Cpgi20821 8 92366529 to 92366899 370 CpG island CpG island 20821
Cpgi20822 8 92460050 to 92461353 1303 CpG island CpG island 20822
Gm45336 8 92465767 to 92469665 3898 + lincRNA gene predicted gene 45336
D8Mit267 8 92548074 to 92548180 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 267
Tssr78750 8 92549273 to 92549274 1 + TSS region transcription start site region 78750
Cpgi20823 8 92673362 to 92675031 1669 CpG island CpG island 20823
Irx6 8 92674289 to 92680956 6667 + protein coding gene Iroquois homeobox 6
D8Mit284 8 92675517 to 92675623 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 284
Lith18 8 92675517 to 92675623 106 QTL lithogenic gene 18
Cpgi20824 8 92678251 to 92678667 416 CpG island CpG island 20824
Gm45505 8 92680172 to 92682194 2022 - antisense lncRNA gene predicted gene 45505
Obq16 8 92685348 to 92685497 149 QTL obesity QTL 16
Nhdlq14 8 92685348 to 92685497 149 QTL non-HDL QTL 14
Hdlq16 8 92685348 to 92685497 149 QTL HDL QTL 16
D8Mit248 8 92685348 to 92685497 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 248
Gm3272 8 92715746 to 92716946 1200 - pseudogene predicted pseudogene 3272
D8Mit240 8 92728530 to 92728652 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 240
Tssr78751 8 92815404 to 92815413 9 + TSS region transcription start site region 78751
Tssr78752 8 92826257 to 92826274 17 + TSS region transcription start site region 78752
Tssr78753 8 92827273 to 92827395 122 + TSS region transcription start site region 78753
Mmp2 8 92827291 to 92853420 26129 + protein coding gene matrix metallopeptidase 2
Cpgi20825 8 92827344 to 92827860 516 CpG island CpG island 20825
Tssr78754 8 92827396 to 92827429 33 + TSS region transcription start site region 78754
Tssr78755 8 92827434 to 92827439 5 + TSS region transcription start site region 78755
Tssr78756 8 92827448 to 92827457 9 + TSS region transcription start site region 78756
Cpgi20826 8 92828543 to 92828707 164 CpG island CpG island 20826
Tssr78757 8 92830764 to 92830807 43 + TSS region transcription start site region 78757
Tssr78758 8 92840162 to 92840175 13 + TSS region transcription start site region 78758
Tssr78759 8 92840223 to 92840235 12 + TSS region transcription start site region 78759
Tssr78760 8 92840432 to 92840457 25 + TSS region transcription start site region 78760
Gm45472 8 92853653 to 92856334 2681 - antisense lncRNA gene predicted gene 45472
Tssr82435 8 92854829 to 92854833 4 - TSS region transcription start site region 82435
Cpgi20827 8 92855148 to 92856066 918 CpG island CpG island 20827
Tssr82436 8 92855256 to 92855298 42 - TSS region transcription start site region 82436
Tssr78761 8 92855319 to 92855400 81 + TSS region transcription start site region 78761
Lpcat2 8 92855339 to 92919279 63940 + protein coding gene lysophosphatidylcholine acyltransferase 2
Tssr78762 8 92855404 to 92855415 11 + TSS region transcription start site region 78762
Tssr78763 8 92864881 to 92864883 2 + TSS region transcription start site region 78763
Tssr78764 8 92880780 to 92880795 15 + TSS region transcription start site region 78764
Tssr78765 8 92882120 to 92882146 26 + TSS region transcription start site region 78765
Tssr78766 8 92885865 to 92885879 14 + TSS region transcription start site region 78766
Tssr78767 8 92887400 to 92887416 16 + TSS region transcription start site region 78767
Tssr78768 8 92887449 to 92887457 8 + TSS region transcription start site region 78768
Tssr78769 8 92892635 to 92892670 35 + TSS region transcription start site region 78769
Tssr78770 8 92901369 to 92901380 11 + TSS region transcription start site region 78770
Tssr78771 8 92901387 to 92901411 24 + TSS region transcription start site region 78771
Capns2 8 92901407 to 92902411 1004 + protein coding gene calpain, small subunit 2
Tssr78772 8 92901419 to 92901437 18 + TSS region transcription start site region 78772
Tssr78773 8 92901438 to 92901447 9 + TSS region transcription start site region 78773
Tssr78774 8 92901448 to 92901466 18 + TSS region transcription start site region 78774
Tssr78775 8 92911719 to 92911728 9 + TSS region transcription start site region 78775
Tssr78776 8 92911766 to 92911777 11 + TSS region transcription start site region 78776
Gm22151 8 92913132 to 92913189 57 - miRNA gene predicted gene, 22151
Tssr78777 8 92918324 to 92918327 3 + TSS region transcription start site region 78777
Gm2947 8 92922522 to 92922870 348 + pseudogene predicted gene 2947
20.MMHAP88FRG8.seq 8 92941728 to 92941913 185 DNA segment DNA segment, 20.MMHAP88FRG8.seq
Cpgi20828 8 92960324 to 92961577 1253 CpG island CpG island 20828
Slc6a2 8 92960418 to 93001667 41249 + protein coding gene solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2
Tssr78778 8 92960572 to 92960584 12 + TSS region transcription start site region 78778
Tssr78779 8 92960600 to 92960616 16 + TSS region transcription start site region 78779
Tssr78780 8 92961027 to 92961044 17 + TSS region transcription start site region 78780