Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:90823949-91444022

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr78687 8 90828305 to 90828336 31 + TSS region transcription start site region 78687
Chd9 8 90828357 to 91054516 226159 + protein coding gene chromodomain helicase DNA binding protein 9
Cpgi20804 8 90828600 to 90829150 550 CpG island CpG island 20804
Tssr78688 8 90828820 to 90828842 22 + TSS region transcription start site region 78688
Tssr78689 8 90828848 to 90828895 47 + TSS region transcription start site region 78689
Gm45641 8 90848034 to 90849846 1812 - antisense lncRNA gene predicted gene 45641
Tssr78690 8 90858080 to 90858086 6 + TSS region transcription start site region 78690
Tssr78691 8 90861954 to 90861957 3 + TSS region transcription start site region 78691
D8Mit310 8 90863290 to 90863381 91 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 310
Tssr78692 8 90876356 to 90876365 9 + TSS region transcription start site region 78692
Tssr78693 8 90876454 to 90876467 13 + TSS region transcription start site region 78693
Tssr78694 8 90876566 to 90876579 13 + TSS region transcription start site region 78694
Gm45640 8 90876581 to 90878476 1895 + unclassified gene predicted gene 45640
Tssr78695 8 90876600 to 90876635 35 + TSS region transcription start site region 78695
Tssr78696 8 90876637 to 90876669 32 + TSS region transcription start site region 78696
Cpgi20805 8 90877147 to 90877394 247 CpG island CpG island 20805
Tssr78697 8 90884056 to 90884084 28 + TSS region transcription start site region 78697
Gm45643 8 90893155 to 90894638 1483 + unclassified gene predicted gene 45643
Tssr78698 8 90896291 to 90896297 6 + TSS region transcription start site region 78698
Tssr78699 8 90900120 to 90900123 3 + TSS region transcription start site region 78699
Fts 8 90905517 to 92728652 1823135 heritable phenotypic marker fused toes
D8Mit251 8 90905517 to 90905638 121 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 251
Gm6658 8 90906532 to 90908416 1884 - protein coding gene predicted gene 6658
Cpgi20806 8 90907675 to 90909513 1838 CpG island CpG island 20806
Tssr78700 8 90908565 to 90908597 32 + TSS region transcription start site region 78700
Tssr78701 8 90908599 to 90908619 20 + TSS region transcription start site region 78701
Tssr78702 8 90935239 to 90935245 6 + TSS region transcription start site region 78702
Tssr78703 8 90954923 to 90955059 136 + TSS region transcription start site region 78703
Tssr78704 8 90955079 to 90955096 17 + TSS region transcription start site region 78704
Tssr78705 8 90955398 to 90955415 17 + TSS region transcription start site region 78705
Tssr78706 8 90955418 to 90955488 70 + TSS region transcription start site region 78706
Tssr78707 8 90955509 to 90955519 10 + TSS region transcription start site region 78707
Gm45363 8 91055264 to 91056557 1293 + unclassified gene predicted gene 45363
Gm39221 8 91059351 to 91061885 2534 + lncRNA gene predicted gene, 39221
Gm22428 8 91061265 to 91061396 131 - snoRNA gene predicted gene, 22428
Cpgi20807 8 91069913 to 91070622 709 CpG island CpG island 20807
Tssr78708 8 91070052 to 91070123 71 + TSS region transcription start site region 78708
Rbl2 8 91070057 to 91123844 53787 + protein coding gene RB transcriptional corepressor like 2
Tssr78709 8 91070139 to 91070151 12 + TSS region transcription start site region 78709
Tssr78710 8 91073779 to 91073790 11 + TSS region transcription start site region 78710
Tssr78711 8 91073973 to 91073994 21 + TSS region transcription start site region 78711
Tssr78712 8 91074072 to 91074080 8 + TSS region transcription start site region 78712
Tssr78713 8 91074085 to 91074105 20 + TSS region transcription start site region 78713
Tssr78714 8 91074200 to 91074229 29 + TSS region transcription start site region 78714
Tssr78715 8 91082169 to 91082189 20 + TSS region transcription start site region 78715
Tssr78716 8 91082241 to 91082270 29 + TSS region transcription start site region 78716
Tssr78717 8 91082459 to 91082486 27 + TSS region transcription start site region 78717
Tssr78718 8 91106389 to 91106414 25 + TSS region transcription start site region 78718
Tssr78719 8 91106521 to 91106545 24 + TSS region transcription start site region 78719
Tssr78720 8 91106554 to 91106561 7 + TSS region transcription start site region 78720
Tssr78721 8 91106563 to 91106595 32 + TSS region transcription start site region 78721
Aktip 8 91107639 to 91135494 27855 - protein coding gene thymoma viral proto-oncogene 1 interacting protein
Tssr78722 8 91112071 to 91112090 19 + TSS region transcription start site region 78722
Gm45464 8 91113762 to 91116671 2909 - sense intronic lncRNA gene predicted gene 45464
Tssr78723 8 91115716 to 91115727 11 + TSS region transcription start site region 78723
Tssr2641 8 91117654 to 91117659 5 - TSS region transcription start site region 2641
Tssr82404 8 91124024 to 91124028 4 - TSS region transcription start site region 82404
Cpgi20808 8 91133418 to 91134480 1062 CpG island CpG island 20808
Tssr82405 8 91133949 to 91134022 73 - TSS region transcription start site region 82405
Tssr82406 8 91134027 to 91134038 11 - TSS region transcription start site region 82406
Tssr82407 8 91135659 to 91135668 9 - TSS region transcription start site region 82407
Tssr82408 8 91135687 to 91135699 12 - TSS region transcription start site region 82408
Tssr82409 8 91135702 to 91135713 11 - TSS region transcription start site region 82409
Gm45665 8 91152207 to 91152374 167 + pseudogene predicted gene 45665
Gm8489 8 91157886 to 91158545 659 + pseudogene predicted gene 8489
Gm45666 8 91160516 to 91171180 10664 + antisense lncRNA gene predicted gene 45666
Gm23408 8 91184919 to 91185183 264 - unclassified non-coding RNA gene predicted gene, 23408
Cpgi20809 8 91190845 to 91191057 212 CpG island CpG island 20809
Gm36243 8 91210570 to 91224667 14097 + antisense lncRNA gene predicted gene, 36243
Rpgrip1l 8 91217030 to 91313262 96232 - protein coding gene Rpgrip1-like
Gm18603 8 91249617 to 91250142 525 - pseudogene predicted gene, 18603
Gm45662 8 91258438 to 91260535 2097 - unclassified gene predicted gene 45662
Gm36163 8 91273747 to 91300367 26620 + lncRNA gene predicted gene, 36163
Gm45428 8 91305967 to 91307755 1788 - unclassified gene predicted gene 45428
Cpgi20810 8 91312966 to 91313801 835 CpG island CpG island 20810
Tssr82410 8 91313223 to 91313279 56 - TSS region transcription start site region 82410
Tssr78724 8 91313245 to 91313246 1 + TSS region transcription start site region 78724
Tssr78725 8 91313280 to 91313293 13 + TSS region transcription start site region 78725
Tssr78726 8 91313301 to 91313306 5 + TSS region transcription start site region 78726
Tssr82411 8 91313376 to 91313388 12 - TSS region transcription start site region 82411
Tssr2642 8 91313432 to 91313463 31 + TSS region transcription start site region 2642
Fto 8 91313525 to 91668439 354914 + protein coding gene fat mass and obesity associated
Tssr78727 8 91313529 to 91313557 28 + TSS region transcription start site region 78727
Tssr78728 8 91313560 to 91313575 15 + TSS region transcription start site region 78728
Tssr78729 8 91313586 to 91313591 5 + TSS region transcription start site region 78729
Tssr78730 8 91318117 to 91318119 2 + TSS region transcription start site region 78730
Tssr78731 8 91363261 to 91363266 5 + TSS region transcription start site region 78731
B130011D17Rik 8 91365668 to 91367265 1597 unclassified gene RIKEN cDNA B130011D17 gene
Tssr78732 8 91384692 to 91384710 18 + TSS region transcription start site region 78732
Tssr78733 8 91387355 to 91387359 4 + TSS region transcription start site region 78733
Gm45427 8 91390693 to 91391945 1252 - unclassified gene predicted gene 45427
Hfhl2 8 91441742 to 91441742 0 QTL high-frequency hearing loss 2