Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:72744283-77694298

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234 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acigg8 8 61221786 to 75127057 13905271 QTL anti COL7 IgG2b antibody 8
Sin3b 8 72723285 to 72758201 34916 + protein coding gene transcriptional regulator, SIN3B (yeast)
Cpgi20593 8 72749757 to 72750013 256 CpG island CpG island 20593
Cpgi20594 8 72756748 to 72757445 697 CpG island CpG island 20594
Tssr78021 8 72761868 to 72761896 28 + TSS region transcription start site region 78021
F2rl3 8 72761880 to 72763874 1994 + protein coding gene coagulation factor II (thrombin) receptor-like 3
Cpgi20595 8 72762595 to 72762849 254 CpG island CpG island 20595
D8Mit133 8 72763829 to 72763978 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 133
Gm45706 8 72765481 to 72767616 2135 - unclassified gene predicted gene 45706
Gm45705 8 72765481 to 72767614 2133 + unclassified gene predicted gene 45705
Gm39198 8 72766388 to 72784995 18607 - lncRNA gene predicted gene, 39198
Gm45704 8 72771658 to 72784333 12675 - pseudogene predicted gene 45704
Tssr2607 8 72772905 to 72772908 3 + TSS region transcription start site region 2607
Gm45791 8 72795136 to 72795487 351 - pseudogene predicted gene 45791
Large1 8 72814599 to 73353540 538941 - protein coding gene LARGE xylosyl- and glucuronyltransferase 1
Tssr81804 8 72835983 to 72836020 37 - TSS region transcription start site region 81804
D8Mit303 8 72849157 to 72849275 118 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 303
D8Mit341 8 72952849 to 72952995 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 341
Tssr81805 8 72988520 to 72988539 19 - TSS region transcription start site region 81805
Tssr81806 8 72998346 to 72998347 1 - TSS region transcription start site region 81806
Mir28b 8 73016512 to 73016591 79 + miRNA gene microRNA 28b
B930093H17Rik 8 73087956 to 73091175 3219 unclassified gene RIKEN cDNA B930093H17 gene
Tssr81807 8 73171728 to 73171733 5 - TSS region transcription start site region 81807
Gm22532 8 73175119 to 73175258 139 - snoRNA gene predicted gene, 22532
A730070K21Rik 8 73199257 to 73200673 1416 unclassified gene RIKEN cDNA A730070K21 gene
Tssr81808 8 73207710 to 73207714 4 - TSS region transcription start site region 81808
Tssr81809 8 73305721 to 73305741 20 - TSS region transcription start site region 81809
Tssr81810 8 73313406 to 73313431 25 - TSS region transcription start site region 81810
Cpgi20596 8 73352362 to 73354907 2545 CpG island CpG island 20596
Tssr81811 8 73353477 to 73353551 74 - TSS region transcription start site region 81811
Tssr2608 8 73353554 to 73353565 11 - TSS region transcription start site region 2608
Tssr78022 8 73383391 to 73383400 9 + TSS region transcription start site region 78022
Gm7943 8 73436571 to 73437604 1033 - pseudogene predicted gene 7943
D8Mit193 8 73438421 to 73438563 142 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 193
Gm23255 8 73641396 to 73641505 109 - miRNA gene predicted gene, 23255
Crry-ps 8 73749475 to 73750783 1308 - pseudogene complement receptor related protein, pseudogene
D8Mit1003 8 73759879 to 73759978 99 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1003
Gm7948 8 73871693 to 73872536 843 + pseudogene predicted gene 7948
Tssr2609 8 73888375 to 73888382 7 + TSS region transcription start site region 2609
Gm45821 8 74081645 to 74093684 12039 - lincRNA gene predicted gene 45821
Gm27864 8 74270247 to 74270436 189 + miRNA gene predicted gene, 27864
Gm11033 8 74590987 to 74833947 242960 - lincRNA gene predicted gene 11033
Cpgi20597 8 74807550 to 74807769 219 CpG island CpG island 20597
D8Mit304 8 74860901 to 74861012 111 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 304
Tssr78023 8 74872692 to 74872740 48 + TSS region transcription start site region 78023
Tssr78024 8 74872751 to 74872763 12 + TSS region transcription start site region 78024
Tssr78025 8 74873127 to 74873137 10 + TSS region transcription start site region 78025
Isx 8 74873174 to 74893506 20332 + protein coding gene intestine specific homeobox
Tssr78026 8 74873196 to 74873228 32 + TSS region transcription start site region 78026
Tssr78027 8 74873270 to 74873283 13 + TSS region transcription start site region 78027
Tssr78028 8 74873291 to 74873303 12 + TSS region transcription start site region 78028
Tssr78029 8 74873593 to 74873615 22 + TSS region transcription start site region 78029
Tssr78030 8 74876348 to 74876352 4 + TSS region transcription start site region 78030
Tssr78031 8 74935738 to 74935740 2 + TSS region transcription start site region 78031
Cpgi20598 8 74993500 to 74994677 1177 CpG island CpG island 20598
Hmgxb4 8 74993518 to 75031978 38460 + protein coding gene HMG box domain containing 4
Tssr78032 8 74993659 to 74993698 39 + TSS region transcription start site region 78032
Tssr81812 8 74994265 to 74994283 18 - TSS region transcription start site region 81812
D8Mit180 8 75007384 to 75007530 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 180
Tssr78033 8 75015100 to 75015102 2 + TSS region transcription start site region 78033
Tssr78034 8 75016229 to 75016246 17 + TSS region transcription start site region 78034
Tssr78035 8 75016258 to 75016271 13 + TSS region transcription start site region 78035
Tssr78036 8 75016297 to 75016308 11 + TSS region transcription start site region 78036
Gm45822 8 75024097 to 75033941 9844 - antisense lncRNA gene predicted gene 45822
Tssr81813 8 75026056 to 75026059 3 - TSS region transcription start site region 81813
Cpgi20599 8 75033355 to 75034579 1224 CpG island CpG island 20599
Tssr78037 8 75033641 to 75033663 22 + TSS region transcription start site region 78037
Tssr78038 8 75033673 to 75033702 29 + TSS region transcription start site region 78038
Tom1 8 75033705 to 75070121 36416 + protein coding gene target of myb1 trafficking protein
Tssr81814 8 75034367 to 75034417 50 - TSS region transcription start site region 81814
Gm45820 8 75037434 to 75045246 7812 - antisense lncRNA gene predicted gene 45820
Tssr81815 8 75039816 to 75039824 8 - TSS region transcription start site region 81815
Tssr78039 8 75058273 to 75058284 11 + TSS region transcription start site region 78039
Tssr78040 8 75058295 to 75058320 25 + TSS region transcription start site region 78040
Tssr78041 8 75058343 to 75058357 14 + TSS region transcription start site region 78041
Tssr78042 8 75060322 to 75060333 11 + TSS region transcription start site region 78042
Tssr78043 8 75067492 to 75067520 28 + TSS region transcription start site region 78043
Gm2059 8 75079141 to 75079871 730 + pseudogene predicted gene 2059
Cpgi20600 8 75083845 to 75084084 239 CpG island CpG island 20600
Tssr81816 8 75085046 to 75085074 28 - TSS region transcription start site region 81816
Tssr81817 8 75085086 to 75085097 11 - TSS region transcription start site region 81817
Cpgi20601 8 75093496 to 75093957 461 CpG island CpG island 20601
Tssr78044 8 75093612 to 75093629 17 + TSS region transcription start site region 78044
Hmox1 8 75093621 to 75100589 6968 + protein coding gene heme oxygenase 1
Tssr78045 8 75094170 to 75094189 19 + TSS region transcription start site region 78045
Tssr78046 8 75094462 to 75094473 11 + TSS region transcription start site region 78046
Tssr78047 8 75094554 to 75094564 10 + TSS region transcription start site region 78047
Tssr78048 8 75095835 to 75095927 92 + TSS region transcription start site region 78048
Tssr78049 8 75096839 to 75096876 37 + TSS region transcription start site region 78049
Tssr78050 8 75096880 to 75096903 23 + TSS region transcription start site region 78050
Tssr81818 8 75096895 to 75096932 37 - TSS region transcription start site region 81818
Tssr78051 8 75096908 to 75096938 30 + TSS region transcription start site region 78051
Tssr78052 8 75097005 to 75097018 13 + TSS region transcription start site region 78052
Tssr78053 8 75097066 to 75097077 11 + TSS region transcription start site region 78053
Tssr78054 8 75097092 to 75097103 11 + TSS region transcription start site region 78054
Tssr78055 8 75097130 to 75097141 11 + TSS region transcription start site region 78055
Tssr78056 8 75097160 to 75097172 12 + TSS region transcription start site region 78056
Tssr78057 8 75097187 to 75097214 27 + TSS region transcription start site region 78057
Tssr78058 8 75097215 to 75097224 9 + TSS region transcription start site region 78058
Tssr78059 8 75097226 to 75097231 5 + TSS region transcription start site region 78059
Tssr78060 8 75097234 to 75097245 11 + TSS region transcription start site region 78060
Tssr78061 8 75097306 to 75097318 12 + TSS region transcription start site region 78061
Tssr78062 8 75098757 to 75098836 79 + TSS region transcription start site region 78062
Tssr81819 8 75098833 to 75098848 15 - TSS region transcription start site region 81819
Tssr78063 8 75099877 to 75099888 11 + TSS region transcription start site region 78063
Tssr78064 8 75099907 to 75099949 42 + TSS region transcription start site region 78064
Tssr78065 8 75099956 to 75099971 15 + TSS region transcription start site region 78065
Tssr78066 8 75100006 to 75100016 10 + TSS region transcription start site region 78066
Tssr78067 8 75100036 to 75100049 13 + TSS region transcription start site region 78067
Tssr78068 8 75100075 to 75100087 12 + TSS region transcription start site region 78068
Tssr78069 8 75100120 to 75100138 18 + TSS region transcription start site region 78069
Tssr78070 8 75100169 to 75100183 14 + TSS region transcription start site region 78070
Tssr78071 8 75100218 to 75100237 19 + TSS region transcription start site region 78071
Tssr78072 8 75100239 to 75100252 13 + TSS region transcription start site region 78072
Tssr78073 8 75100300 to 75100322 22 + TSS region transcription start site region 78073
Tssr78074 8 75100352 to 75100376 24 + TSS region transcription start site region 78074
Tssr78075 8 75100377 to 75100385 8 + TSS region transcription start site region 78075
Tssr78076 8 75100416 to 75100430 14 + TSS region transcription start site region 78076
Tssr78077 8 75100508 to 75100525 17 + TSS region transcription start site region 78077
Tssr81820 8 75100586 to 75100593 7 - TSS region transcription start site region 81820
Cpgi20602 8 75109132 to 75110132 1000 CpG island CpG island 20602
Tssr81821 8 75109330 to 75109373 43 - TSS region transcription start site region 81821
Tssr78078 8 75109511 to 75109522 11 + TSS region transcription start site region 78078
Tssr78079 8 75109559 to 75109601 42 + TSS region transcription start site region 78079
Mcm5 8 75109569 to 75128439 18870 + protein coding gene minichromosome maintenance complex component 5
Tssr78080 8 75117611 to 75117627 16 + TSS region transcription start site region 78080
Tssr78081 8 75126236 to 75126277 41 + TSS region transcription start site region 78081
Gm45899 8 75176458 to 75177733 1275 + lincRNA gene predicted gene 45899
Gm45903 8 75201439 to 75210042 8603 + lincRNA gene predicted gene 45903
Gf7 8 75201479 to 75201479 0 QTL gonadal fat pad weight 7
Cpgi20603 8 75212618 to 75214185 1567 CpG island CpG island 20603
Tssr78082 8 75213179 to 75213257 78 + TSS region transcription start site region 78082
Tssr78083 8 75213259 to 75213285 26 + TSS region transcription start site region 78083
Tssr78084 8 75213288 to 75213297 9 + TSS region transcription start site region 78084
Tssr78085 8 75213325 to 75213334 9 + TSS region transcription start site region 78085
Tssr78086 8 75213356 to 75213369 13 + TSS region transcription start site region 78086
Tssr78087 8 75213430 to 75213461 31 + TSS region transcription start site region 78087
Tssr78088 8 75213482 to 75213492 10 + TSS region transcription start site region 78088
Rasd2 8 75213944 to 75224113 10169 + protein coding gene RASD family, member 2
Tssr78089 8 75219283 to 75219298 15 + TSS region transcription start site region 78089
Gm9644 8 75274482 to 75275664 1182 - pseudogene predicted gene 9644
Gm45907 8 75294570 to 75294762 192 + pseudogene predicted gene 45907
Cpgi20604 8 75383703 to 75383904 201 CpG island CpG island 20604
Umpk-ps 8 75383802 to 75384628 826 + pseudogene uridine monophosphate kinase, pseudogene
Gm7984 8 75398511 to 75399048 537 + pseudogene predicted gene 7984
Gm19885 8 75401968 to 75402310 342 + pseudogene predicted gene, 19885
D8Mit28 8 75404498 to 75404616 118 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 28
Gm10358 8 75405337 to 75406537 1200 - protein coding gene predicted gene 10358
Tssr81822 8 75406584 to 75406593 9 - TSS region transcription start site region 81822
Obq31 8 75409776 to 75409776 0 QTL obesity QTL 31
Iqcm 8 75448694 to 75984503 535809 + protein coding gene IQ motif containing M
Tssr78090 8 75448710 to 75448739 29 + TSS region transcription start site region 78090
Tssr78091 8 75448751 to 75448760 9 + TSS region transcription start site region 78091
Tssr78092 8 75448770 to 75448775 5 + TSS region transcription start site region 78092
Gm38270 8 75595779 to 75596185 406 - unclassified gene predicted gene, 38270
Gm7901 8 75711600 to 75713196 1596 - pseudogene predicted gene 7901
Tssr78093 8 75770902 to 75770904 2 + TSS region transcription start site region 78093
D8Mit282 8 75857530 to 75857647 117 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 282
D8Mit302 8 75857534 to 75857647 113 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 302
Gm45740 8 75992509 to 76415040 422531 - lincRNA gene predicted gene 45740
Gm45741 8 76010026 to 76011139 1113 + lincRNA gene predicted gene 45741
Gm22544 8 76021929 to 76022055 126 - snoRNA gene predicted gene, 22544
Gm45742 8 76116595 to 76117027 432 - pseudogene predicted gene 45742
Gm22509 8 76274344 to 76274450 106 - snRNA gene predicted gene, 22509
Gm45798 8 76289516 to 76296013 6497 + lincRNA gene predicted gene 45798
Gm7069 8 76293972 to 76294979 1007 + pseudogene predicted gene 7069
Gm7990 8 76395134 to 76395724 590 - pseudogene predicted gene 7990
Gm39199 8 76437089 to 76445882 8793 - lncRNA gene predicted gene, 39199
Tssr81823 8 76551847 to 76551854 7 - TSS region transcription start site region 81823
Gm27355 8 76619155 to 76619282 127 - rRNA gene predicted gene, 27355
Gm10649 8 76795761 to 76821102 25341 - bidirectional promoter lncRNA gene predicted gene 10649
Gm5353 8 76862256 to 76863048 792 - pseudogene predicted gene 5353
Cpgi20605 8 76898834 to 76901054 2220 CpG island CpG island 20605
Tssr78094 8 76899245 to 76899279 34 + TSS region transcription start site region 78094
Tssr78095 8 76899773 to 76899828 55 + TSS region transcription start site region 78095
Tssr78096 8 76899852 to 76899864 12 + TSS region transcription start site region 78096
Nr3c2 8 76900179 to 77244010 343831 + protein coding gene nuclear receptor subfamily 3, group C, member 2
Tssr78097 8 76901543 to 76901556 13 + TSS region transcription start site region 78097
Cpgi20606 8 76901563 to 76902681 1118 CpG island CpG island 20606
Tssr81824 8 76902009 to 76902023 14 - TSS region transcription start site region 81824
Tssr78098 8 76902277 to 76902376 99 + TSS region transcription start site region 78098
Tssr78099 8 77093375 to 77093378 3 + TSS region transcription start site region 78099
Gm24838 8 77146351 to 77146480 129 - snoRNA gene predicted gene, 24838
Cpgi20607 8 77185850 to 77186236 386 CpG island CpG island 20607
Gm23260 8 77194695 to 77194866 171 + snRNA gene predicted gene, 23260
Arhgap10 8 77250366 to 77517953 267587 - protein coding gene Rho GTPase activating protein 10
Gm45406 8 77282861 to 77286207 3346 + antisense lncRNA gene predicted gene 45406
Tssr81825 8 77286902 to 77286906 4 - TSS region transcription start site region 81825
Tssr81826 8 77289956 to 77289978 22 - TSS region transcription start site region 81826
4933421D24Rik 8 77305533 to 77313299 7766 + antisense lncRNA gene RIKEN cDNA 4933421D24 gene
Tssr81827 8 77310937 to 77310947 10 - TSS region transcription start site region 81827
Gm45285 8 77331970 to 77336922 4952 + antisense lncRNA gene predicted gene 45285
Gm45407 8 77368841 to 77372516 3675 - unclassified gene predicted gene 45407
Tssr81828 8 77376219 to 77376223 4 - TSS region transcription start site region 81828
Tssr81829 8 77387305 to 77387324 19 - TSS region transcription start site region 81829
Tssr81830 8 77387399 to 77387417 18 - TSS region transcription start site region 81830
Tssr81831 8 77387489 to 77387502 13 - TSS region transcription start site region 81831
Tssr81832 8 77433255 to 77433266 11 - TSS region transcription start site region 81832
Tssr81833 8 77452087 to 77452091 4 - TSS region transcription start site region 81833
Tssr81834 8 77466060 to 77466071 11 - TSS region transcription start site region 81834