Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:4871804-5071814

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116 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi18260 7 4876879 to 4877357 478 CpG island CpG island 18260
Tssr64369 7 4877047 to 4877111 64 + TSS region transcription start site region 64369
Isoc2a 7 4877053 to 4895717 18664 + protein coding gene isochorismatase domain containing 2a
Tssr64370 7 4877112 to 4877127 15 + TSS region transcription start site region 64370
Gm36210 7 4898450 to 4906516 8066 - protein coding gene predicted gene, 36210
Cpgi18261 7 4899264 to 4899418 154 CpG island CpG island 18261
Gm44983 7 4908886 to 4912357 3471 - lincRNA gene predicted gene 44983
Gm5320 7 4909038 to 4910556 1518 + pseudogene predicted gene 5320
Tssr70556 7 4912394 to 4912429 35 - TSS region transcription start site region 70556
Tssr64371 7 4912531 to 4912558 27 + TSS region transcription start site region 64371
Cpgi18262 7 4914944 to 4915596 652 CpG island CpG island 18262
Tssr64372 7 4915176 to 4915199 23 + TSS region transcription start site region 64372
Tssr64373 7 4915202 to 4915230 28 + TSS region transcription start site region 64373
Zfp628 7 4915217 to 4922002 6785 + protein coding gene zinc finger protein 628
Tssr64374 7 4915233 to 4915256 23 + TSS region transcription start site region 64374
Cpgi18263 7 4920218 to 4920674 456 CpG island CpG island 18263
Nat14 7 4922028 to 4925006 2978 + protein coding gene N-acetyltransferase 14
Tssr64375 7 4922563 to 4922593 30 + TSS region transcription start site region 64375
Tssr64376 7 4922597 to 4922613 16 + TSS region transcription start site region 64376
Cpgi18264 7 4922715 to 4923046 331 CpG island CpG island 18264
Tssr64377 7 4922844 to 4922896 52 + TSS region transcription start site region 64377
Cpgi18265 7 4923866 to 4924324 458 CpG island CpG island 18265
Ssc5d 7 4925785 to 4944826 19041 + protein coding gene scavenger receptor cysteine rich family, 5 domains
Tssr64378 7 4925802 to 4925868 66 + TSS region transcription start site region 64378
Cpgi18266 7 4943352 to 4943518 166 CpG island CpG island 18266
Tssr64379 7 4943840 to 4943854 14 + TSS region transcription start site region 64379
Tssr64380 7 4943880 to 4943897 17 + TSS region transcription start site region 64380
Tssr64381 7 4943996 to 4944015 19 + TSS region transcription start site region 64381
Sbk2 7 4956910 to 4964470 7560 - protein coding gene SH3-binding domain kinase family, member 2
Tssr70557 7 4964333 to 4964365 32 - TSS region transcription start site region 70557
Tssr70558 7 4964368 to 4964386 18 - TSS region transcription start site region 70558
Tssr70559 7 4964395 to 4964411 16 - TSS region transcription start site region 70559
Sbk3 7 4965260 to 4971168 5908 - protein coding gene SH3 domain binding kinase family, member 3
Tssr70560 7 4971771 to 4971778 7 - TSS region transcription start site region 70560
Tssr70561 7 4971804 to 4971814 10 - TSS region transcription start site region 70561
Tssr70562 7 4971834 to 4971884 50 - TSS region transcription start site region 70562
Zfp579 7 4992852 to 4996101 3249 - protein coding gene zinc finger protein 579
Cpgi18267 7 4993169 to 4994899 1730 CpG island CpG island 18267
Tssr70563 7 4995298 to 4995319 21 - TSS region transcription start site region 70563
Tssr70564 7 4995388 to 4995414 26 - TSS region transcription start site region 70564
Cpgi18268 7 4995773 to 4996150 377 CpG island CpG island 18268
Tssr70565 7 4996023 to 4996032 9 - TSS region transcription start site region 70565
Tssr70566 7 4996044 to 4996094 50 - TSS region transcription start site region 70566
Tssr70567 7 4996095 to 4996116 21 - TSS region transcription start site region 70567
Tssr70568 7 4996122 to 4996141 19 - TSS region transcription start site region 70568
Tssr70569 7 4996184 to 4996195 11 - TSS region transcription start site region 70569
D7Mit168 7 5003764 to 5003963 199 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 168
Fiz1 7 5007059 to 5014697 7638 - protein coding gene Flt3 interacting zinc finger protein 1
Tssr70570 7 5013244 to 5013264 20 - TSS region transcription start site region 70570
Tssr70571 7 5013281 to 5013302 21 - TSS region transcription start site region 70571
Tssr64382 7 5013372 to 5013388 16 + TSS region transcription start site region 64382
Cpgi18269 7 5014323 to 5014709 386 CpG island CpG island 18269
Tssr64383 7 5014438 to 5014454 16 + TSS region transcription start site region 64383
Tssr70572 7 5014645 to 5014684 39 - TSS region transcription start site region 70572
Cpgi18270 7 5015139 to 5016155 1016 CpG island CpG island 18270
Zfp524 7 5015252 to 5018493 3241 + protein coding gene zinc finger protein 524
Tssr64384 7 5015422 to 5015442 20 + TSS region transcription start site region 64384
Tssr64385 7 5015466 to 5015509 43 + TSS region transcription start site region 64385
Gm44973 7 5015496 to 5033097 17601 + protein coding gene predicted gene 44973
Tssr64386 7 5015521 to 5015536 15 + TSS region transcription start site region 64386
Cpgi18271 7 5020172 to 5020807 635 CpG island CpG island 18271
Zfp865 7 5020314 to 5033226 12912 + protein coding gene zinc finger protein 865
Tssr64387 7 5020415 to 5020426 11 + TSS region transcription start site region 64387
Tssr64388 7 5020441 to 5020452 11 + TSS region transcription start site region 64388
Tssr64389 7 5020453 to 5020463 10 + TSS region transcription start site region 64389
Tssr2073 7 5020472 to 5020481 9 + TSS region transcription start site region 2073
Tssr70573 7 5020502 to 5020516 14 - TSS region transcription start site region 70573
Tssr64390 7 5020561 to 5020602 41 + TSS region transcription start site region 64390
Tssr64391 7 5020610 to 5020631 21 + TSS region transcription start site region 64391
Cpgi18272 7 5029546 to 5032211 2665 CpG island CpG island 18272
4632433K11Rik 7 5034118 to 5035246 1128 + unclassified non-coding RNA gene RIKEN cDNA 4632433K11 gene
Zfp784 7 5034446 to 5038446 4000 - protein coding gene zinc finger protein 784
Cpgi18273 7 5035798 to 5036122 324 CpG island CpG island 18273
Cpgi18274 7 5038018 to 5038699 681 CpG island CpG island 18274
Tssr64392 7 5038308 to 5038323 15 + TSS region transcription start site region 64392
Tssr70574 7 5038413 to 5038426 13 - TSS region transcription start site region 70574
Tssr70575 7 5038427 to 5038450 23 - TSS region transcription start site region 70575
Gm45970 7 5038440 to 5048733 10293 + lncRNA gene predicted gene, 45970
Tssr64393 7 5039286 to 5039288 2 + TSS region transcription start site region 64393
Gm15510 7 5046946 to 5051486 4540 - antisense lncRNA gene predicted gene 15510
Cpgi18275 7 5051252 to 5052096 844 CpG island CpG island 18275
Tssr64394 7 5051467 to 5051476 9 + TSS region transcription start site region 64394
Tssr64395 7 5051485 to 5051496 11 + TSS region transcription start site region 64395
Tssr64396 7 5051500 to 5051511 11 + TSS region transcription start site region 64396
Tssr64397 7 5051515 to 5051557 42 + TSS region transcription start site region 64397
Zfp580 7 5051538 to 5053723 2185 + protein coding gene zinc finger protein 580
Tssr64398 7 5051563 to 5051601 38 + TSS region transcription start site region 64398
Tssr64399 7 5051603 to 5051632 29 + TSS region transcription start site region 64399
Cpgi18276 7 5052579 to 5053629 1050 CpG island CpG island 18276
Ccdc106 7 5053823 to 5060785 6962 + protein coding gene coiled-coil domain containing 106
Cpgi18277 7 5053966 to 5054158 192 CpG island CpG island 18277
Gm38941 7 5054472 to 5055000 528 + pseudogene predicted gene, 38941
Gm38940 7 5056373 to 5056837 464 - lncRNA gene predicted gene, 38940
Cpgi18278 7 5056669 to 5057326 657 CpG island CpG island 18278
Tssr64400 7 5056706 to 5056741 35 + TSS region transcription start site region 64400
Tssr64401 7 5056882 to 5056906 24 + TSS region transcription start site region 64401
Tssr64402 7 5057161 to 5057188 27 + TSS region transcription start site region 64402
Gm45133 7 5059277 to 5062049 2772 - unclassified gene predicted gene 45133
Tssr64403 7 5059651 to 5059676 25 + TSS region transcription start site region 64403
Cpgi18279 7 5060214 to 5062738 2524 CpG island CpG island 18279
Tssr64404 7 5061357 to 5061383 26 + TSS region transcription start site region 64404
Tssr64405 7 5061398 to 5061411 13 + TSS region transcription start site region 64405
Tssr64406 7 5061672 to 5061752 80 + TSS region transcription start site region 64406
Tssr64407 7 5061753 to 5061762 9 + TSS region transcription start site region 64407
Tssr70576 7 5062054 to 5062104 50 - TSS region transcription start site region 70576
U2af2 7 5062143 to 5079938 17795 + protein coding gene U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
Tssr64408 7 5062183 to 5062241 58 + TSS region transcription start site region 64408
Tssr64409 7 5062256 to 5062267 11 + TSS region transcription start site region 64409
Tssr64410 7 5065064 to 5065075 11 + TSS region transcription start site region 64410
Tssr64411 7 5065206 to 5065211 5 + TSS region transcription start site region 64411
Tssr64412 7 5068901 to 5069002 101 + TSS region transcription start site region 64412
Tssr64413 7 5069005 to 5069024 19 + TSS region transcription start site region 64413
Tssr64414 7 5069046 to 5069065 19 + TSS region transcription start site region 64414
Tssr64415 7 5069093 to 5069110 17 + TSS region transcription start site region 64415
Tssr64416 7 5069149 to 5069185 36 + TSS region transcription start site region 64416
Tssr64417 7 5069189 to 5069202 13 + TSS region transcription start site region 64417