Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:34016385-42526418

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664 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro13 7 3463212 to 37142942 33679730 heritable phenotypic marker reproductive mutant 13, JAX Reproductive Mutagenesis Program
Prnr2 7 18994869 to 40024609 21029740 QTL prion resistance 2
Asp3 7 27606373 to 37142942 9536569 QTL audiogenic seizure prone 3
Tssr65870 7 34021479 to 34021483 4 + TSS region transcription start site region 65870
Tssr65871 7 34021544 to 34021557 13 + TSS region transcription start site region 65871
Scgb1b27 7 34021567 to 34022881 1314 + protein coding gene secretoglobin, family 1B, member 27
Tssr65872 7 34021746 to 34021760 14 + TSS region transcription start site region 65872
Tssr71973 7 34022778 to 34022791 13 - TSS region transcription start site region 71973
Tssr65873 7 34022810 to 34022817 7 + TSS region transcription start site region 65873
Gm12760 7 34036447 to 34037432 985 - pseudogene predicted gene 12760
Tssr71974 7 34037470 to 34037471 1 - TSS region transcription start site region 71974
Gm12779 7 34068555 to 34068697 142 - pseudogene predicted gene 12779
Scgb1b30 7 34095431 to 34100837 5406 + protein coding gene secretoglobin, family 1B, member 30
Tssr65874 7 34095495 to 34095503 8 + TSS region transcription start site region 65874
Wtip 7 34109543 to 34133268 23725 - protein coding gene WT1-interacting protein
Cpgi18841 7 34132336 to 34133867 1531 CpG island CpG island 18841
Tssr71975 7 34133215 to 34133297 82 - TSS region transcription start site region 71975
Uba2 7 34140697 to 34168585 27888 - protein coding gene ubiquitin-like modifier activating enzyme 2
Cpgi18842 7 34167851 to 34168754 903 CpG island CpG island 18842
Tssr71976 7 34168499 to 34168510 11 - TSS region transcription start site region 71976
Tssr71977 7 34168516 to 34168582 66 - TSS region transcription start site region 71977
Tssr65875 7 34168605 to 34168628 23 + TSS region transcription start site region 65875
Tssr65876 7 34168636 to 34168648 12 + TSS region transcription start site region 65876
Tssr65877 7 34168659 to 34168676 17 + TSS region transcription start site region 65877
Gm12778 7 34175712 to 34176044 332 + pseudogene predicted gene 12778
Gm12783 7 34176758 to 34180004 3246 + pseudogene predicted gene 12783
Pdcd2l 7 34184499 to 34196661 12162 - protein coding gene programmed cell death 2-like
Tssr71978 7 34189483 to 34189492 9 - TSS region transcription start site region 71978
Tssr71979 7 34189494 to 34189524 30 - TSS region transcription start site region 71979
Tssr71980 7 34192138 to 34192149 11 - TSS region transcription start site region 71980
Cpgi18843 7 34196048 to 34196841 793 CpG island CpG island 18843
Tssr71981 7 34196139 to 34196157 18 - TSS region transcription start site region 71981
Tssr71982 7 34196178 to 34196192 14 - TSS region transcription start site region 71982
Tssr71983 7 34196641 to 34196675 34 - TSS region transcription start site region 71983
Lar 7 34201330 to 34230336 29006 QTL low antibody response
Gpi1 7 34201330 to 34230336 29006 - protein coding gene glucose phosphate isomerase 1
Tssr71984 7 34207940 to 34207944 4 - TSS region transcription start site region 71984
Tssr71985 7 34209882 to 34209921 39 - TSS region transcription start site region 71985
Tssr71986 7 34213432 to 34213448 16 - TSS region transcription start site region 71986
Tssr71987 7 34213450 to 34213470 20 - TSS region transcription start site region 71987
Tssr71988 7 34221663 to 34221688 25 - TSS region transcription start site region 71988
Tssr71989 7 34223743 to 34223755 12 - TSS region transcription start site region 71989
Gm26762 7 34224755 to 34230236 5481 + lincRNA gene predicted gene, 26762
Tssr71990 7 34229415 to 34229436 21 - TSS region transcription start site region 71990
Tssr71991 7 34229445 to 34229461 16 - TSS region transcription start site region 71991
Cpgi18844 7 34229816 to 34230546 730 CpG island CpG island 18844
Tssr71992 7 34230253 to 34230276 23 - TSS region transcription start site region 71992
Tssr71993 7 34230284 to 34230308 24 - TSS region transcription start site region 71993
Tssr71994 7 34230313 to 34230324 11 - TSS region transcription start site region 71994
Tssr71995 7 34230426 to 34230450 24 - TSS region transcription start site region 71995
Gm12762 7 34231182 to 34233991 2809 - lincRNA gene predicted gene 12762
Gm12758 7 34233293 to 34236732 3439 + antisense lncRNA gene predicted gene 12758
Cpgi18845 7 34233722 to 34234905 1183 CpG island CpG island 18845
Tssr71996 7 34233990 to 34234017 27 - TSS region transcription start site region 71996
Tssr71997 7 34234067 to 34234099 32 - TSS region transcription start site region 71997
Tssr71998 7 34234559 to 34234566 7 - TSS region transcription start site region 71998
4931406P16Rik 7 34236707 to 34313551 76844 - protein coding gene RIKEN cDNA 4931406P16 gene
Tssr71999 7 34242333 to 34242358 25 - TSS region transcription start site region 71999
BC060293 7 34250252 to 34251355 1103 - unclassified gene cDNA sequence BC060293
Gm6096 7 34251038 to 34251493 455 + protein coding gene predicted gene 6096
Tssr72000 7 34292087 to 34292091 4 - TSS region transcription start site region 72000
Tssr72001 7 34305486 to 34305497 11 - TSS region transcription start site region 72001
Tssr72002 7 34305518 to 34305543 25 - TSS region transcription start site region 72002
Cpgi18846 7 34312715 to 34313852 1137 CpG island CpG island 18846
Tssr65878 7 34313018 to 34313026 8 + TSS region transcription start site region 65878
Tssr72003 7 34313489 to 34313500 11 - TSS region transcription start site region 72003
Tssr72004 7 34313508 to 34313528 20 - TSS region transcription start site region 72004
Tssr72005 7 34313531 to 34313568 37 - TSS region transcription start site region 72005
Lsm14a 7 34344637 to 34389637 45000 - protein coding gene LSM14A mRNA processing body assembly factor
Tssr72006 7 34357805 to 34357822 17 - TSS region transcription start site region 72006
Tssr72007 7 34360622 to 34360623 1 - TSS region transcription start site region 72007
Gm44567 7 34362701 to 34365331 2630 - unclassified gene predicted gene 44567
Gm12774 7 34383659 to 34384074 415 + pseudogene predicted gene 12774
Tssr72008 7 34385243 to 34385252 9 - TSS region transcription start site region 72008
Cpgi18847 7 34388580 to 34390232 1652 CpG island CpG island 18847
Tssr65879 7 34388604 to 34388671 67 + TSS region transcription start site region 65879
Gm12764 7 34388665 to 34394779 6114 + antisense lncRNA gene predicted gene 12764
Tssr72009 7 34389461 to 34389473 12 - TSS region transcription start site region 72009
Tssr72010 7 34389575 to 34389638 63 - TSS region transcription start site region 72010
Tssr72011 7 34389684 to 34389695 11 - TSS region transcription start site region 72011
Tssr72012 7 34389699 to 34389720 21 - TSS region transcription start site region 72012
2310043P16Rik 7 34389732 to 34393612 3880 + unclassified gene RIKEN cDNA 2310043P16 gene
Tssr65880 7 34389747 to 34389803 56 + TSS region transcription start site region 65880
Cpgi18848 7 34411021 to 34411288 267 CpG island CpG island 18848
D7Mit79 7 34422737 to 34422848 111 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 79
Gm12766 7 34438137 to 34520885 82748 + lincRNA gene predicted gene 12766
Gm12780 7 34495421 to 34496065 644 - pseudogene predicted gene 12780
Gm31709 7 34501027 to 34501407 380 - pseudogene predicted gene, 31709
Gm35297 7 34522341 to 34547064 24723 - lncRNA gene predicted gene, 35297
Tssr72013 7 34546783 to 34546798 15 - TSS region transcription start site region 72013
Gm12784 7 34547206 to 34560149 12943 + lincRNA gene predicted gene 12784
Cpgi18849 7 34570174 to 34571083 909 CpG island CpG island 18849
Cpgi18850 7 34606071 to 34606325 254 CpG island CpG island 18850
Gm35378 7 34629434 to 34631558 2124 + lncRNA gene predicted gene, 35378
Cpgi18851 7 34630484 to 34630985 501 CpG island CpG island 18851
Gm44837 7 34636996 to 34637712 716 - lincRNA gene predicted gene 44837
Kctd15 7 34639015 to 34655509 16494 - protein coding gene potassium channel tetramerisation domain containing 15
D7Ertd351e 7 34643926 to 34644148 222 DNA segment DNA segment, Chr 7, ERATO Doi 351, expressed
Cpgi18852 7 34652780 to 34655930 3150 CpG island CpG island 18852
Tssr72014 7 34654342 to 34654393 51 - TSS region transcription start site region 72014
Tssr65881 7 34655277 to 34655301 24 + TSS region transcription start site region 65881
Tssr72015 7 34655500 to 34655515 15 - TSS region transcription start site region 72015
Gm12781 7 34655570 to 34661202 5632 + antisense lncRNA gene predicted gene 12781
Tssr65882 7 34659958 to 34659969 11 + TSS region transcription start site region 65882
Tssr65883 7 34659970 to 34660004 34 + TSS region transcription start site region 65883
Gm12756 7 34665413 to 34673999 8586 - lincRNA gene predicted gene 12756
Chst8 7 34674468 to 34812711 138243 - protein coding gene carbohydrate sulfotransferase 8
Cpgi18853 7 34675081 to 34676233 1152 CpG island CpG island 18853
Cpgi18854 7 34693962 to 34694227 265 CpG island CpG island 18854
Tssr2198 7 34725059 to 34725060 1 + TSS region transcription start site region 2198
Tssr65884 7 34743946 to 34743950 4 + TSS region transcription start site region 65884
Tssr72016 7 34748289 to 34748294 5 - TSS region transcription start site region 72016
Cpgi18855 7 34753129 to 34753567 438 CpG island CpG island 18855
D7Mit156 7 34801081 to 34801224 143 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 156
Cpgi18856 7 34811527 to 34813354 1827 CpG island CpG island 18856
Tssr72017 7 34812677 to 34812693 16 - TSS region transcription start site region 72017
Gm38987 7 34812993 to 34844179 31186 + lncRNA gene predicted gene, 38987
Cpgi18857 7 34819796 to 34820177 381 CpG island CpG island 18857
D7Ertd1e 7 34854727 to 34854962 235 DNA segment DNA segment, Chr 7, ERATO Doi 1, expressed
Tssr2199 7 34881585 to 34881589 4 - TSS region transcription start site region 2199
Cpgi18858 7 34912243 to 34912880 637 CpG island CpG island 18858
Tssr65885 7 34912400 to 34912415 15 + TSS region transcription start site region 65885
Pepd 7 34912407 to 35044708 132301 + protein coding gene peptidase D
Prt5 7 34912407 to 46742980 11830573 heritable phenotypic marker protease 5
Gm25922 7 34943856 to 34943985 129 - snoRNA gene predicted gene, 25922
Tssr72018 7 34952985 to 34952994 9 - TSS region transcription start site region 72018
Tssr65886 7 34969335 to 34969372 37 + TSS region transcription start site region 65886
Gm35534 7 34983346 to 34990113 6767 - lncRNA gene predicted gene, 35534
Gm35484 7 35021050 to 35029209 8159 - lncRNA gene predicted gene, 35484
Tssr72019 7 35029300 to 35029308 8 - TSS region transcription start site region 72019
Tssr65887 7 35040504 to 35040516 12 + TSS region transcription start site region 65887
Cebpg 7 35046422 to 35056566 10144 - protein coding gene CCAAT/enhancer binding protein (C/EBP), gamma
Tssr72020 7 35049545 to 35049570 25 - TSS region transcription start site region 72020
Gm44836 7 35051398 to 35052537 1139 - sense intronic lncRNA gene predicted gene 44836
Gm45094 7 35052975 to 35053591 616 - unclassified gene predicted gene 45094
Cpgi18859 7 35055589 to 35057043 1454 CpG island CpG island 18859
Gm45095 7 35056027 to 35056379 352 + antisense lncRNA gene predicted gene 45095
Tssr72021 7 35056419 to 35056428 9 - TSS region transcription start site region 72021
Tssr72022 7 35056467 to 35056556 89 - TSS region transcription start site region 72022
Tssr72023 7 35056562 to 35056586 24 - TSS region transcription start site region 72023
Tssr65888 7 35056752 to 35056759 7 + TSS region transcription start site region 65888
Gm45096 7 35057264 to 35066733 9469 - lincRNA gene predicted gene 45096
Tssr72024 7 35067824 to 35067830 6 - TSS region transcription start site region 72024
D7Mit269 7 35070229 to 35070331 102 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 269
Gm25033 7 35081910 to 35081979 69 + miRNA gene predicted gene, 25033
Gm35611 7 35086836 to 35090842 4006 + lincRNA gene predicted gene, 35611
Gm22535 7 35101822 to 35101940 118 + rRNA gene predicted gene, 22535
Cpgi18860 7 35117839 to 35120866 3027 CpG island CpG island 18860
Gm45091 7 35118044 to 35119605 1561 - antisense lncRNA gene predicted gene 45091
Tssr65889 7 35119285 to 35119301 16 + TSS region transcription start site region 65889
Cebpa 7 35119293 to 35121928 2635 + protein coding gene CCAAT/enhancer binding protein (C/EBP), alpha
Tssr2200 7 35119331 to 35119335 4 + TSS region transcription start site region 2200
Tssr65890 7 35119594 to 35119618 24 + TSS region transcription start site region 65890
Tssr65891 7 35119625 to 35119650 25 + TSS region transcription start site region 65891
Tssr65892 7 35120006 to 35120022 16 + TSS region transcription start site region 65892
Tssr72025 7 35121924 to 35121928 4 - TSS region transcription start site region 72025
Tssr2201 7 35127911 to 35127937 26 - TSS region transcription start site region 2201
Gm35724 7 35128897 to 35142427 13530 + lncRNA gene predicted gene, 35724
Gm35665 7 35135046 to 35141449 6403 - lincRNA gene predicted gene, 35665
Gm35889 7 35152557 to 35158264 5707 - lncRNA gene predicted gene, 35889
Gm38988 7 35163337 to 35173793 10456 - lncRNA gene predicted gene, 38988
Tssr72026 7 35178290 to 35178292 2 - TSS region transcription start site region 72026
Cpgi18861 7 35184994 to 35186795 1801 CpG island CpG island 18861
Tssr65893 7 35186358 to 35186369 11 + TSS region transcription start site region 65893
Tssr65894 7 35186370 to 35186408 38 + TSS region transcription start site region 65894
Slc7a10 7 35186385 to 35201114 14729 + protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 10
Tssr65895 7 35186409 to 35186432 23 + TSS region transcription start site region 65895
Lrp3 7 35200878 to 35215493 14615 - protein coding gene low density lipoprotein receptor-related protein 3
Cpgi18862 7 35203248 to 35204418 1170 CpG island CpG island 18862
Cpgi18863 7 35214450 to 35216157 1707 CpG island CpG island 18863
Tssr72027 7 35215248 to 35215413 165 - TSS region transcription start site region 72027
Gm24505 7 35217235 to 35217360 125 + snoRNA gene predicted gene, 24505
Gm38989 7 35232385 to 35234814 2429 - lncRNA gene predicted gene, 38989
Cpgi18864 7 35234559 to 35235152 593 CpG island CpG island 18864
n-TTagt9 7 35234770 to 35234843 73 - tRNA gene nuclear encoded tRNA threonine 9 (anticodon AGT)
Wdr88 7 35236136 to 35276494 40358 - protein coding gene WD repeat domain 88
Cpgi18865 7 35267214 to 35267448 234 CpG island CpG island 18865
Cpgi18866 7 35269477 to 35269680 203 CpG island CpG island 18866
Cpgi18867 7 35274937 to 35275226 289 CpG island CpG island 18867
Cpgi18868 7 35275516 to 35275673 157 CpG island CpG island 18868
Tssr72028 7 35275530 to 35275544 14 - TSS region transcription start site region 72028
Tssr72029 7 35275546 to 35275560 14 - TSS region transcription start site region 72029
Gpatch1 7 35276544 to 35318440 41896 - protein coding gene G patch domain containing 1
Gm44636 7 35282493 to 35283247 754 + unclassified gene predicted gene 44636
Cpgi18869 7 35318067 to 35318604 537 CpG island CpG island 18869
Tssr72030 7 35318408 to 35318437 29 - TSS region transcription start site region 72030
Cpgi18870 7 35333458 to 35335329 1871 CpG island CpG island 18870
Tssr2202 7 35333786 to 35333819 33 - TSS region transcription start site region 2202
Rhpn2 7 35334180 to 35392287 58107 + protein coding gene rhophilin, Rho GTPase binding protein 2
Tssr65896 7 35334306 to 35334331 25 + TSS region transcription start site region 65896
D7Mit225 7 35337417 to 35337517 100 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 225
Tssr65897 7 35353525 to 35353542 17 + TSS region transcription start site region 65897
Tssr65898 7 35353543 to 35353554 11 + TSS region transcription start site region 65898
Faap24 7 35392152 to 35396767 4615 - protein coding gene Fanconi anemia core complex associated protein 24
Cpgi18871 7 35396661 to 35396933 272 CpG island CpG island 18871
Tssr72031 7 35396776 to 35396821 45 - TSS region transcription start site region 72031
Cep89 7 35397035 to 35438689 41654 + protein coding gene centrosomal protein 89
Tssr65899 7 35397046 to 35397125 79 + TSS region transcription start site region 65899
D7Ertd316e 7 35412090 to 35412339 249 DNA segment DNA segment, Chr 7, ERATO Doi 316, expressed
Gm42378 7 35415046 to 35448650 33604 - lncRNA gene predicted gene, 42378