Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:31121814-31461817

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scn1b 7 31116524 to 31127003 10479 - protein coding gene sodium channel, voltage-gated, type I, beta
Cpgi18836 7 31125116 to 31125425 309 CpG island CpG island 18836
Cpgi18837 7 31126194 to 31127645 1451 CpG island CpG island 18837
Tssr71935 7 31126716 to 31126725 9 - TSS region transcription start site region 71935
Tssr71936 7 31126759 to 31126772 13 - TSS region transcription start site region 71936
Tssr71937 7 31126921 to 31126934 13 - TSS region transcription start site region 71937
Tssr71938 7 31126950 to 31126992 42 - TSS region transcription start site region 71938
Tssr71939 7 31126993 to 31127042 49 - TSS region transcription start site region 71939
Tssr71940 7 31127164 to 31127177 13 - TSS region transcription start site region 71940
Gramd1a 7 31130127 to 31155896 25769 - protein coding gene GRAM domain containing 1A
Tssr71941 7 31137123 to 31137148 25 - TSS region transcription start site region 71941
Tssr71942 7 31137306 to 31137319 13 - TSS region transcription start site region 71942
Tssr71943 7 31137322 to 31137348 26 - TSS region transcription start site region 71943
Tssr71944 7 31137425 to 31137443 18 - TSS region transcription start site region 71944
Tssr71945 7 31142627 to 31142632 5 - TSS region transcription start site region 71945
Cpgi18838 7 31142687 to 31142843 156 CpG island CpG island 18838
Tssr71946 7 31148834 to 31148857 23 - TSS region transcription start site region 71946
Tssr71947 7 31148936 to 31148947 11 - TSS region transcription start site region 71947
G630030J09Rik 7 31149528 to 31152707 3179 + antisense lncRNA gene RIKEN cDNA G630030J09 gene
Tssr71948 7 31149705 to 31149717 12 - TSS region transcription start site region 71948
Tssr65846 7 31149945 to 31149959 14 + TSS region transcription start site region 65846
Tssr65847 7 31149974 to 31149992 18 + TSS region transcription start site region 65847
Tssr65848 7 31150006 to 31150018 12 + TSS region transcription start site region 65848
Tssr65849 7 31150027 to 31150039 12 + TSS region transcription start site region 65849
Tssr65850 7 31150068 to 31150075 7 + TSS region transcription start site region 65850
Cpgi18839 7 31150445 to 31151838 1393 CpG island CpG island 18839
Tssr71949 7 31150981 to 31151070 89 - TSS region transcription start site region 71949
Tssr71950 7 31151145 to 31151171 26 - TSS region transcription start site region 71950
Tssr71951 7 31151390 to 31151414 24 - TSS region transcription start site region 71951
Tssr71952 7 31151427 to 31151448 21 - TSS region transcription start site region 71952
Tssr65851 7 31151513 to 31151536 23 + TSS region transcription start site region 65851
Tssr71953 7 31151641 to 31151674 33 - TSS region transcription start site region 71953
Tssr65852 7 31155678 to 31155689 11 + TSS region transcription start site region 65852
Tssr71954 7 31155869 to 31155896 27 - TSS region transcription start site region 71954
Tssr71955 7 31155957 to 31155981 24 - TSS region transcription start site region 71955
Tssr71956 7 31156234 to 31156244 10 - TSS region transcription start site region 71956
Tssr71957 7 31156361 to 31156400 39 - TSS region transcription start site region 71957
Tssr65853 7 31162060 to 31162072 12 + TSS region transcription start site region 65853
Tssr65854 7 31162097 to 31162105 8 + TSS region transcription start site region 65854
Gm10640 7 31162358 to 31170641 8283 + antisense lncRNA gene predicted gene 10640
D7Mit155 7 31175518 to 31175665 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 155
Gm9569 7 31182037 to 31182823 786 + pseudogene predicted gene 9569
Tssr65855 7 31207832 to 31207839 7 + TSS region transcription start site region 65855
Cpgi18840 7 31208195 to 31208577 382 CpG island CpG island 18840
Tssr65856 7 31208326 to 31208363 37 + TSS region transcription start site region 65856
Gm37292 7 31208357 to 31209114 757 + unclassified gene predicted gene, 37292
Tssr65857 7 31208370 to 31208390 20 + TSS region transcription start site region 65857
Tssr65858 7 31213298 to 31213311 13 + TSS region transcription start site region 65858
Tssr65859 7 31213343 to 31213350 7 + TSS region transcription start site region 65859
Scgb1b1-ps 7 31255891 to 31256277 386 - pseudogene secretoglobin, family 1B, member 1, pseudogene
Tssr71958 7 31256287 to 31256294 7 - TSS region transcription start site region 71958
Tssr65860 7 31263614 to 31263645 31 + TSS region transcription start site region 65860
Tssr2193 7 31263735 to 31263744 9 + TSS region transcription start site region 2193
Scgb2b1 7 31263757 to 31265768 2011 + protein coding gene secretoglobin, family 2B, member 1
Scgb1b2 7 31290519 to 31291816 1297 - protein coding gene secretoglobin, family 1B, member 2
Tssr65861 7 31291442 to 31291467 25 + TSS region transcription start site region 65861
Tssr71959 7 31291814 to 31291817 3 - TSS region transcription start site region 71959
Tssr65862 7 31302666 to 31302703 37 + TSS region transcription start site region 65862
Tssr65863 7 31302750 to 31302764 14 + TSS region transcription start site region 65863
Scgb2b2 7 31302769 to 31304977 2208 + protein coding gene secretoglobin, family 2B, member 2
Scgb2b3 7 31359038 to 31362072 3034 - protein coding gene secretoglobin, family 2B, member 3
Tssr71960 7 31362095 to 31362100 5 - TSS region transcription start site region 71960
Tssr65864 7 31375587 to 31375596 9 + TSS region transcription start site region 65864
Scgb1b3 7 31375592 to 31376916 1324 + protein coding gene secretoglobin, family 1B, member 3
Scgb2b4-ps 7 31401034 to 31403176 2142 - pseudogene secretoglobin, family 2B, member 4, pseudogene
Scgb1b4-ps 7 31409675 to 31410061 386 + pseudogene secretoglobin, family 1B, member 4, pseudogene
Scgb1b28-ps 7 31443823 to 31444207 384 + pseudogene secretoglobin, family 1B, member 28, pseudogene