Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:31061541-33822722

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204 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lgi4 7 31059342 to 31070935 11593 + protein coding gene leucine-rich repeat LGI family, member 4
Cpgi18833 7 31067404 to 31067802 398 CpG island CpG island 18833
Fxyd3 7 31070535 to 31076697 6162 - protein coding gene FXYD domain-containing ion transport regulator 3
Tssr71926 7 31070630 to 31070636 6 - TSS region transcription start site region 71926
Tssr71927 7 31073678 to 31073693 15 - TSS region transcription start site region 71927
Tssr71928 7 31076656 to 31076675 19 - TSS region transcription start site region 71928
Hpn 7 31098725 to 31115290 16565 - protein coding gene hepsin
Cpgi18834 7 31103238 to 31103654 416 CpG island CpG island 18834
Tssr71929 7 31110870 to 31110905 35 - TSS region transcription start site region 71929
Tssr71930 7 31111005 to 31111016 11 - TSS region transcription start site region 71930
Tssr71931 7 31111148 to 31111158 10 - TSS region transcription start site region 71931
Tssr71932 7 31114700 to 31114716 16 - TSS region transcription start site region 71932
Tssr71933 7 31115227 to 31115308 81 - TSS region transcription start site region 71933
Cpgi18835 7 31115935 to 31116124 189 CpG island CpG island 18835
Scn1b 7 31116524 to 31127003 10479 - protein coding gene sodium channel, voltage-gated, type I, beta
Tssr71934 7 31116892 to 31116904 12 - TSS region transcription start site region 71934
Cpgi18836 7 31125116 to 31125425 309 CpG island CpG island 18836
Cpgi18837 7 31126194 to 31127645 1451 CpG island CpG island 18837
Tssr71935 7 31126716 to 31126725 9 - TSS region transcription start site region 71935
Tssr71936 7 31126759 to 31126772 13 - TSS region transcription start site region 71936
Tssr71937 7 31126921 to 31126934 13 - TSS region transcription start site region 71937
Tssr71938 7 31126950 to 31126992 42 - TSS region transcription start site region 71938
Tssr71939 7 31126993 to 31127042 49 - TSS region transcription start site region 71939
Tssr71940 7 31127164 to 31127177 13 - TSS region transcription start site region 71940
Gramd1a 7 31130127 to 31155896 25769 - protein coding gene GRAM domain containing 1A
Tssr71941 7 31137123 to 31137148 25 - TSS region transcription start site region 71941
Tssr71942 7 31137306 to 31137319 13 - TSS region transcription start site region 71942
Tssr71943 7 31137322 to 31137348 26 - TSS region transcription start site region 71943
Tssr71944 7 31137425 to 31137443 18 - TSS region transcription start site region 71944
Tssr71945 7 31142627 to 31142632 5 - TSS region transcription start site region 71945
Cpgi18838 7 31142687 to 31142843 156 CpG island CpG island 18838
Tssr71946 7 31148834 to 31148857 23 - TSS region transcription start site region 71946
Tssr71947 7 31148936 to 31148947 11 - TSS region transcription start site region 71947
G630030J09Rik 7 31149528 to 31152707 3179 + antisense lncRNA gene RIKEN cDNA G630030J09 gene
Tssr71948 7 31149705 to 31149717 12 - TSS region transcription start site region 71948
Tssr65846 7 31149945 to 31149959 14 + TSS region transcription start site region 65846
Tssr65847 7 31149974 to 31149992 18 + TSS region transcription start site region 65847
Tssr65848 7 31150006 to 31150018 12 + TSS region transcription start site region 65848
Tssr65849 7 31150027 to 31150039 12 + TSS region transcription start site region 65849
Tssr65850 7 31150068 to 31150075 7 + TSS region transcription start site region 65850
Cpgi18839 7 31150445 to 31151838 1393 CpG island CpG island 18839
Tssr71949 7 31150981 to 31151070 89 - TSS region transcription start site region 71949
Tssr71950 7 31151145 to 31151171 26 - TSS region transcription start site region 71950
Tssr71951 7 31151390 to 31151414 24 - TSS region transcription start site region 71951
Tssr71952 7 31151427 to 31151448 21 - TSS region transcription start site region 71952
Tssr65851 7 31151513 to 31151536 23 + TSS region transcription start site region 65851
Tssr71953 7 31151641 to 31151674 33 - TSS region transcription start site region 71953
Tssr65852 7 31155678 to 31155689 11 + TSS region transcription start site region 65852
Tssr71954 7 31155869 to 31155896 27 - TSS region transcription start site region 71954
Tssr71955 7 31155957 to 31155981 24 - TSS region transcription start site region 71955
Tssr71956 7 31156234 to 31156244 10 - TSS region transcription start site region 71956
Tssr71957 7 31156361 to 31156400 39 - TSS region transcription start site region 71957
Tssr65853 7 31162060 to 31162072 12 + TSS region transcription start site region 65853
Tssr65854 7 31162097 to 31162105 8 + TSS region transcription start site region 65854
Gm10640 7 31162358 to 31170641 8283 + antisense lncRNA gene predicted gene 10640
D7Mit155 7 31175518 to 31175665 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 155
Gm9569 7 31182037 to 31182823 786 + pseudogene predicted gene 9569
Tssr65855 7 31207832 to 31207839 7 + TSS region transcription start site region 65855
Cpgi18840 7 31208195 to 31208577 382 CpG island CpG island 18840
Tssr65856 7 31208326 to 31208363 37 + TSS region transcription start site region 65856
Gm37292 7 31208357 to 31209114 757 + unclassified gene predicted gene, 37292
Tssr65857 7 31208370 to 31208390 20 + TSS region transcription start site region 65857
Tssr65858 7 31213298 to 31213311 13 + TSS region transcription start site region 65858
Tssr65859 7 31213343 to 31213350 7 + TSS region transcription start site region 65859
Scgb1b1-ps 7 31255891 to 31256277 386 - pseudogene secretoglobin, family 1B, member 1, pseudogene
Tssr71958 7 31256287 to 31256294 7 - TSS region transcription start site region 71958
Tssr65860 7 31263614 to 31263645 31 + TSS region transcription start site region 65860
Tssr2193 7 31263735 to 31263744 9 + TSS region transcription start site region 2193
Scgb2b1 7 31263757 to 31265768 2011 + protein coding gene secretoglobin, family 2B, member 1
Scgb1b2 7 31290519 to 31291816 1297 - protein coding gene secretoglobin, family 1B, member 2
Tssr65861 7 31291442 to 31291467 25 + TSS region transcription start site region 65861
Tssr71959 7 31291814 to 31291817 3 - TSS region transcription start site region 71959
Tssr65862 7 31302666 to 31302703 37 + TSS region transcription start site region 65862
Tssr65863 7 31302750 to 31302764 14 + TSS region transcription start site region 65863
Scgb2b2 7 31302769 to 31304977 2208 + protein coding gene secretoglobin, family 2B, member 2
Scgb2b3 7 31359038 to 31362072 3034 - protein coding gene secretoglobin, family 2B, member 3
Tssr71960 7 31362095 to 31362100 5 - TSS region transcription start site region 71960
Tssr65864 7 31375587 to 31375596 9 + TSS region transcription start site region 65864
Scgb1b3 7 31375592 to 31376916 1324 + protein coding gene secretoglobin, family 1B, member 3
Scgb2b4-ps 7 31401034 to 31403176 2142 - pseudogene secretoglobin, family 2B, member 4, pseudogene
Scgb1b4-ps 7 31409675 to 31410061 386 + pseudogene secretoglobin, family 1B, member 4, pseudogene
Scgb1b28-ps 7 31443823 to 31444207 384 + pseudogene secretoglobin, family 1B, member 28, pseudogene
Gm29492 7 31470940 to 31471396 456 - pseudogene predicted gene 29492
Scgb2b5-ps 7 31500190 to 31501444 1254 - pseudogene secretoglobin, family 2B, member 5, pseudogene
Scgb1b5-ps 7 31507441 to 31507834 393 + pseudogene secretoglobin, family 1B, member 5, pseudogene
Scgb2b28-ps 7 31545046 to 31546807 1761 - pseudogene secretoglobin, family 2B, member 28, pseudogene
Rpl23a-ps8 7 31603294 to 31603756 462 + pseudogene ribosomal protein L23A, pseudogene 8
Scgb2b6 7 31617743 to 31619526 1783 - protein coding gene secretoglobin, family 2B, member 6
Scgb1b6-ps 7 31625788 to 31625986 198 + pseudogene secretoglobin, family 1B, member 6, pseudogene
Gm4373 7 31652395 to 31652950 555 + pseudogene predicted gene 4373
Rpl23a-ps9 7 31679593 to 31680055 462 + pseudogene ribosomal protein L23A, pseudogene 9
Scgb2b7 7 31703779 to 31705754 1975 - protein coding gene secretoglobin, family 2B, member 7
Scgb1b7 7 31712665 to 31713978 1313 + protein coding gene secretoglobin, family 1B, member 7
Gm9114 7 31744189 to 31745185 996 + pseudogene predicted gene 9114
Gm29627 7 31766952 to 31767414 462 + pseudogene predicted gene 29627
Scgb2b8-ps 7 31778782 to 31780558 1776 - pseudogene secretoglobin, family 2B, member 8, pseudogene
Scgb1b8-ps 7 31788283 to 31788667 384 + pseudogene secretoglobin, family 1B, member 8, pseudogene
Gm6669 7 31817113 to 31818109 996 + pseudogene predicted pseudogene 6669
Gm9120 7 31879045 to 31880038 993 + pseudogene predicted gene 9120
Gm21673 7 31896505 to 31896940 435 + pseudogene predicted gene, 21673
Scgb2b9-ps 7 31915240 to 31917385 2145 - pseudogene secretoglobin, family 2B, member 9, pseudogene
Scgb1b9-ps 7 31924345 to 31924729 384 + pseudogene secretoglobin, family 1B, member 9, pseudogene
Gm46010 7 31935017 to 31938434 3417 - pseudogene predicted gene, 46010
Gm5329 7 31972105 to 31972567 462 - pseudogene predicted gene 5329
Scgb2b29-ps 7 32013037 to 32014798 1761 - pseudogene secretoglobin, family 2B, member 29, pseudogene
Gm9127 7 32059024 to 32060008 984 + pseudogene predicted gene 9127
Gm29262 7 32073586 to 32073781 195 - pseudogene predicted gene 29262
Gm29263 7 32073877 to 32074339 462 + pseudogene predicted gene 29263
Scgb2b10 7 32092150 to 32093938 1788 - protein coding gene secretoglobin, family 2B, member 10
Scgb1b10 7 32100869 to 32102050 1181 + protein coding gene secretoglobin, family 1B, member 10
Rpl23a-ps10 7 32136677 to 32137138 461 + pseudogene ribosomal protein L23A, pseudogene 10
Scgb2b30 7 32146243 to 32148031 1788 - protein coding gene secretoglobin, family 2B, member 30
Gm9135 7 32171714 to 32172703 989 + pseudogene predicted gene 9135
Gm28256 7 32202259 to 32202397 138 - pseudogene predicted gene 28256
Gm28257 7 32202493 to 32202955 462 + pseudogene predicted gene 28257
Scgb2b11 7 32209173 to 32211142 1969 - protein coding gene secretoglobin, family 2B, member 11
Scgb1b11 7 32222840 to 32224156 1316 + protein coding gene secretoglobin, family 1B, member 11
Scgb2b12 7 32325286 to 32327245 1959 - protein coding gene secretoglobin, family 2B, member 12
Scgb1b12 7 32334182 to 32335501 1319 + protein coding gene secretoglobin, family 1B, member 12
Gm9142 7 32358928 to 32359882 954 + pseudogene predicted gene 9142
Gm28862 7 32388244 to 32388406 162 - pseudogene predicted gene 28862
Rpl23a-ps11 7 32388481 to 32388943 462 + pseudogene ribosomal protein L23A, pseudogene 11
Scgb1b29 7 32441541 to 32442722 1181 + protein coding gene secretoglobin, family 1B, member 29
Gm9146 7 32473252 to 32474257 1005 + pseudogene predicted gene 9146
Gm5116 7 32495638 to 32496100 462 + pseudogene predicted gene 5116
Scgb2b13-ps 7 32507503 to 32509279 1776 - pseudogene secretoglobin, family 2B, member 13, pseudogene
Scgb1b13-ps 7 32517013 to 32517403 390 + pseudogene secretoglobin, family 1B, member 13, pseudogene
Tssr2194 7 32542950 to 32542951 1 + TSS region transcription start site region 2194
Gm5327 7 32545759 to 32546767 1008 + pseudogene predicted pseudogene 5327
Gm9149 7 32604815 to 32605821 1006 + pseudogene predicted gene 9149
Gm21135 7 32622259 to 32622694 435 + pseudogene predicted gene, 21135
Scgb2b14-ps 7 32647654 to 32649799 2145 - pseudogene secretoglobin, family 2B, member 14, pseudogene
Scgb1b14-ps 7 32656765 to 32657158 393 + pseudogene secretoglobin, family 1B, member 14, pseudogene
Gm24766 7 32690250 to 32690370 120 + miRNA gene predicted gene, 24766
Gm5058 7 32704477 to 32704939 462 - pseudogene predicted gene 5058
Gm29429 7 32705029 to 32705149 120 + pseudogene predicted gene 29429
Scgb2b31-ps 7 32745301 to 32747062 1761 - pseudogene secretoglobin, family 2B, member 31, pseudogene
Gm4398 7 32791496 to 32792487 991 + pseudogene predicted gene 4398
Gm29432 7 32806135 to 32806273 138 - pseudogene predicted gene 29432
Gm28408 7 32806369 to 32806831 462 + pseudogene predicted gene 28408
Scgb2b15 7 32827683 to 32829653 1970 - protein coding gene secretoglobin, family 2B, member 15
Scgb1b15 7 32836570 to 32837751 1181 + protein coding gene secretoglobin, family 1B, member 15
Scgb2b16-ps 7 32874544 to 32876689 2145 - pseudogene secretoglobin, family 2B, member 16, pseudogene
Scgb1b16-ps 7 32883655 to 32884048 393 + pseudogene secretoglobin, family 1B, member 16, pseudogene
Gm25817 7 32917146 to 32917266 120 + miRNA gene predicted gene, 25817
Gm9156 7 32931373 to 32931835 462 - pseudogene predicted gene 9156
Gm28409 7 32931925 to 32932027 102 + pseudogene predicted gene 28409
Scgb2b32-ps 7 32972200 to 32973961 1761 - pseudogene secretoglobin, family 2B, member 32, pseudogene
Gm4405 7 33018397 to 33019378 981 + pseudogene predicted gene 4405
Gm28383 7 33033037 to 33033175 138 - pseudogene predicted gene 28383
Gm28384 7 33033271 to 33033733 462 + pseudogene predicted gene 28384
Scgb2b17 7 33054582 to 33056552 1970 - protein coding gene secretoglobin, family 2B, member 17
Scgb1b17 7 33063465 to 33064646 1181 + protein coding gene secretoglobin, family 1B, member 17
Gm28992 7 33101869 to 33102007 138 - pseudogene predicted gene 28992
Rpl23a-ps7 7 33102103 to 33102562 459 + pseudogene ribosomal protein L23A, pseudogene 7
Scgb2b33 7 33111673 to 33113458 1785 - protein coding gene secretoglobin, family 2B, member 33
Gm9162 7 33137119 to 33138109 990 + pseudogene predicted gene 9162
Gm28559 7 33164974 to 33165112 138 - pseudogene predicted gene 28559
Gm6003 7 33165208 to 33165670 462 + pseudogene predicted gene 6003
Scgb2b18 7 33171892 to 33173861 1969 - protein coding gene secretoglobin, family 2B, member 18
Scgb1b18 7 33185568 to 33186868 1300 + protein coding gene secretoglobin, family 1B, member 18
Scgb2b19 7 33278370 to 33280338 1968 - protein coding gene secretoglobin, family 2B, member 19
Scgb1b19 7 33287307 to 33288491 1184 + protein coding gene secretoglobin, family 1B, member 19
Gm9167 7 33312140 to 33313101 961 + pseudogene predicted gene 9167
Scgb2b20 7 33364343 to 33366319 1976 - protein coding gene secretoglobin, family 2B, member 20
Scgb1b20 7 33373234 to 33374559 1325 + protein coding gene secretoglobin, family 1B, member 20
Gm5732 7 33402819 to 33403825 1006 + pseudogene predicted gene 5732
Gm28794 7 33423439 to 33423574 135 - pseudogene predicted gene 28794
Gm5731 7 33423670 to 33424150 480 + pseudogene predicted gene 5731
Scgb1b34-ps 7 33443029 to 33444811 1782 - pseudogene secretoglobin, family 1B, member 34, pseudogene
Scgb2b21 7 33518488 to 33520455 1967 - protein coding gene secretoglobin, family 2B, member 21
Tssr2195 7 33527357 to 33527360 3 + TSS region transcription start site region 2195
Scgb1b21 7 33527376 to 33528558 1182 + protein coding gene secretoglobin, family 1B, member 21
Gm12770 7 33567253 to 33567714 461 - pseudogene predicted gene 12770
Gm12771 7 33568156 to 33568290 134 + pseudogene predicted gene 12771
Scgb2b22-ps 7 33604264 to 33606052 1788 - pseudogene secretoglobin, family 2B, member 22, pseudogene
Tssr2196 7 33606064 to 33606074 10 - TSS region transcription start site region 2196
Scgb1b22-ps 7 33614622 to 33615807 1185 + pseudogene secretoglobin, family 1B, member 22, pseudogene
Scgb2b23-ps 7 33625145 to 33653281 28136 - pseudogene secretoglobin, family 2B, member 23, pseudogene
Tssr65865 7 33635145 to 33635147 2 + TSS region transcription start site region 65865
Scgb1b23-ps 7 33635164 to 33635533 369 + pseudogene secretoglobin, family 1B, member 23, pseudogene
Tssr65866 7 33653453 to 33653493 40 + TSS region transcription start site region 65866
Gm12763 7 33653461 to 33657731 4270 + lincRNA gene predicted gene 12763
Rpl23a-ps12 7 33697270 to 33697737 467 + pseudogene ribosomal protein L23A, pseudogene 12
Scgb2b24 7 33737193 to 33739295 2102 - protein coding gene secretoglobin, family 2B, member 24
Tssr71961 7 33739303 to 33739322 19 - TSS region transcription start site region 71961
Tssr2197 7 33741838 to 33741843 5 + TSS region transcription start site region 2197
D7Mit308 7 33742910 to 33743025 115 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 308
D7Dcr5 7 33742913 to 33743013 100 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 5
Tssr65867 7 33743737 to 33743743 6 + TSS region transcription start site region 65867
Tssr65868 7 33743781 to 33743788 7 + TSS region transcription start site region 65868
Scgb1b24 7 33743799 to 33744982 1183 + protein coding gene secretoglobin, family 1B, member 24
Gm12782 7 33780829 to 33781537 708 - pseudogene predicted gene 12782
Gm28614 7 33795310 to 33796135 825 - pseudogene predicted gene 28614
Epfq5 7 33798302 to 58499217 24700915 QTL epididymal fat pad weight QTL 5
W6q17 7 33798302 to 58499217 24700915 QTL weight 6 weeks QTL 17
W3q10 7 33798302 to 58499217 24700915 QTL weight 3 weeks QTL 10
Kidq5 7 33798302 to 58499217 24700915 QTL kidney weight QTL 5
W10q18 7 33798302 to 58499217 24700915 QTL weight 10 weeks QTL 18
Splq7 7 33798302 to 58499217 24700915 QTL spleen weight QTL 7