Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:30460236-30860248

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nphs1 7 30458315 to 30487223 28908 + protein coding gene nephrosis 1, nephrin
Nphs1os 7 30462164 to 30465591 3427 - antisense lncRNA gene nephrosis 1 homolog, nephrin, opposite strand
Tssr65772 7 30465295 to 30465318 23 + TSS region transcription start site region 65772
Tssr65773 7 30465326 to 30465364 38 + TSS region transcription start site region 65773
Cpgi18805 7 30465354 to 30466232 878 CpG island CpG island 18805
Tssr65774 7 30465365 to 30465383 18 + TSS region transcription start site region 65774
Tssr65775 7 30465488 to 30465499 11 + TSS region transcription start site region 65775
Tssr65776 7 30465735 to 30465762 27 + TSS region transcription start site region 65776
Rps12-ps4 7 30484701 to 30485097 396 - pseudogene ribosomal protein S12, pseudogene 4
Tssr71779 7 30485182 to 30485183 1 - TSS region transcription start site region 71779
Prodh2 7 30493622 to 30513402 19780 + protein coding gene proline dehydrogenase (oxidase) 2
Tssr65777 7 30493631 to 30493666 35 + TSS region transcription start site region 65777
Cpgi18806 7 30493811 to 30494345 534 CpG island CpG island 18806
D7Mit344 7 30494940 to 30495059 119 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 344
Arhgap33os 7 30515122 to 30522193 7071 + antisense lncRNA gene Rho GTPase activating protein 33, opposite strand
Tssr65778 7 30515145 to 30515156 11 + TSS region transcription start site region 65778
Tssr2186 7 30515229 to 30515236 7 + TSS region transcription start site region 2186
Arhgap33 7 30522226 to 30535060 12834 - protein coding gene Rho GTPase activating protein 33
Tssr71780 7 30524421 to 30524426 5 - TSS region transcription start site region 71780
Tssr71781 7 30526162 to 30526182 20 - TSS region transcription start site region 71781
Tssr71782 7 30526458 to 30526464 6 - TSS region transcription start site region 71782
Cpgi18807 7 30534195 to 30535560 1365 CpG island CpG island 18807
Tssr71783 7 30534792 to 30534815 23 - TSS region transcription start site region 71783
Tssr71784 7 30535006 to 30535047 41 - TSS region transcription start site region 71784
Tssr71785 7 30535056 to 30535066 10 - TSS region transcription start site region 71785
Tssr71786 7 30535082 to 30535093 11 - TSS region transcription start site region 71786
Proser3 7 30539134 to 30552299 13165 - protein coding gene proline and serine rich 3
1700019A23Rik 7 30539666 to 30539861 195 + unclassified gene RIKEN cDNA 1700019A23 gene
D7Mit343 7 30550602 to 30550721 119 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 343
Cpgi18808 7 30551981 to 30552651 670 CpG island CpG island 18808
Tssr71787 7 30552255 to 30552316 61 - TSS region transcription start site region 71787
Tssr71788 7 30552346 to 30552375 29 - TSS region transcription start site region 71788
Tssr65779 7 30552532 to 30552564 32 + TSS region transcription start site region 65779
Hspb6 7 30552556 to 30555439 2883 + protein coding gene heat shock protein, alpha-crystallin-related, B6
Gm38670 7 30552828 to 30552904 76 + miRNA gene predicted gene, 38670
Cpgi18809 7 30553191 to 30553534 343 CpG island CpG island 18809
Tssr65780 7 30553263 to 30553272 9 + TSS region transcription start site region 65780
Tssr65781 7 30553293 to 30553309 16 + TSS region transcription start site region 65781
Cpgi18810 7 30554226 to 30554597 371 CpG island CpG island 18810
Tssr71789 7 30554665 to 30554688 23 - TSS region transcription start site region 71789
Tssr65782 7 30554772 to 30554794 22 + TSS region transcription start site region 65782
Tssr71790 7 30554777 to 30554830 53 - TSS region transcription start site region 71790
Tssr65783 7 30554847 to 30554860 13 + TSS region transcription start site region 65783
Tssr65784 7 30554871 to 30554884 13 + TSS region transcription start site region 65784
Tssr65785 7 30554923 to 30554939 16 + TSS region transcription start site region 65785
Tssr65786 7 30554941 to 30554952 11 + TSS region transcription start site region 65786
Tssr65787 7 30555035 to 30555047 12 + TSS region transcription start site region 65787
Lin37 7 30555441 to 30559723 4282 - protein coding gene lin-37 homolog (C. elegans)
Tssr71791 7 30558742 to 30558747 5 - TSS region transcription start site region 71791
Tssr71792 7 30558773 to 30558785 12 - TSS region transcription start site region 71792
Tssr71793 7 30559498 to 30559531 33 - TSS region transcription start site region 71793
Tssr71794 7 30559600 to 30559652 52 - TSS region transcription start site region 71794
Tssr71795 7 30559828 to 30559842 14 - TSS region transcription start site region 71795
Psenen 7 30561865 to 30563184 1319 - protein coding gene presenilin enhancer gamma secretase subunit
Tssr71796 7 30562741 to 30562770 29 - TSS region transcription start site region 71796
Tssr71797 7 30562912 to 30562933 21 - TSS region transcription start site region 71797
Cpgi18811 7 30562918 to 30563691 773 CpG island CpG island 18811
Tssr71798 7 30562937 to 30562953 16 - TSS region transcription start site region 71798
Tssr71799 7 30562954 to 30562966 12 - TSS region transcription start site region 71799
Tssr71800 7 30562996 to 30563024 28 - TSS region transcription start site region 71800
Tssr71801 7 30563187 to 30563229 42 - TSS region transcription start site region 71801
Tssr71802 7 30563235 to 30563256 21 - TSS region transcription start site region 71802
Tssr71803 7 30563264 to 30563275 11 - TSS region transcription start site region 71803
Tssr65788 7 30563298 to 30563349 51 + TSS region transcription start site region 65788
U2af1l4 7 30563340 to 30565364 2024 + protein coding gene U2 small nuclear RNA auxiliary factor 1-like 4
Gm49396 7 30563344 to 30567960 4616 + protein coding gene predicted gene, 49396
Tssr65789 7 30563800 to 30563826 26 + TSS region transcription start site region 65789
Tssr65790 7 30563838 to 30563849 11 + TSS region transcription start site region 65790
Tssr65791 7 30565402 to 30565407 5 + TSS region transcription start site region 65791
Tssr65792 7 30565410 to 30565432 22 + TSS region transcription start site region 65792
Igflr1 7 30565427 to 30567962 2535 + protein coding gene IGF-like family receptor 1
Kmt2b 7 30568858 to 30588726 19868 - protein coding gene lysine (K)-specific methyltransferase 2B
Cpgi18812 7 30587972 to 30590075 2103 CpG island CpG island 18812
Tssr71804 7 30588720 to 30588749 29 - TSS region transcription start site region 71804
Tssr71805 7 30588830 to 30588855 25 - TSS region transcription start site region 71805
Gm32082 7 30588902 to 30591524 2622 + lncRNA gene predicted gene, 32082
Tssr71806 7 30588939 to 30588989 50 - TSS region transcription start site region 71806
Mir3569 7 30589380 to 30589437 57 + miRNA gene microRNA 3569
Zbtb32 7 30589681 to 30598909 9228 - protein coding gene zinc finger and BTB domain containing 32
Tssr65793 7 30589775 to 30589798 23 + TSS region transcription start site region 65793
Tssr71807 7 30592941 to 30592954 13 - TSS region transcription start site region 71807
Tssr71808 7 30598819 to 30598826 7 - TSS region transcription start site region 71808
Tssr71809 7 30598831 to 30598855 24 - TSS region transcription start site region 71809
Tssr71810 7 30598863 to 30598884 21 - TSS region transcription start site region 71810
Tssr71811 7 30598899 to 30598912 13 - TSS region transcription start site region 71811
Cpgi18813 7 30600057 to 30600404 347 CpG island CpG island 18813
Upk1a 7 30603092 to 30612734 9642 - protein coding gene uroplakin 1A
Tssr71812 7 30603518 to 30603528 10 - TSS region transcription start site region 71812
Tssr71813 7 30603559 to 30603565 6 - TSS region transcription start site region 71813
Tssr71814 7 30603578 to 30603585 7 - TSS region transcription start site region 71814
Tssr71815 7 30603803 to 30603812 9 - TSS region transcription start site region 71815
Tssr71816 7 30605197 to 30605205 8 - TSS region transcription start site region 71816
Tssr65794 7 30606916 to 30606948 32 + TSS region transcription start site region 65794
Tssr71817 7 30606926 to 30606942 16 - TSS region transcription start site region 71817
Cpgi18814 7 30609587 to 30609769 182 CpG island CpG island 18814
Tssr71818 7 30612731 to 30612744 13 - TSS region transcription start site region 71818
Tssr71819 7 30612761 to 30612771 10 - TSS region transcription start site region 71819
Tssr71820 7 30612797 to 30612881 84 - TSS region transcription start site region 71820
Tssr71821 7 30613861 to 30613865 4 - TSS region transcription start site region 71821
Cox6b1 7 30616974 to 30626151 9177 - protein coding gene cytochrome c oxidase, subunit 6B1
Tssr71822 7 30620902 to 30620907 5 - TSS region transcription start site region 71822
Tssr71823 7 30624534 to 30624570 36 - TSS region transcription start site region 71823
Cpgi18815 7 30625646 to 30626349 703 CpG island CpG island 18815
Tssr71824 7 30626079 to 30626122 43 - TSS region transcription start site region 71824
Tssr71825 7 30626124 to 30626126 2 - TSS region transcription start site region 71825
Tssr71826 7 30626127 to 30626139 12 - TSS region transcription start site region 71826
Tssr71827 7 30626145 to 30626164 19 - TSS region transcription start site region 71827
Cpgi18816 7 30633587 to 30634247 660 CpG island CpG island 18816
Etv2 7 30633616 to 30635852 2236 - protein coding gene ets variant 2
Cpgi18817 7 30634656 to 30635125 469 CpG island CpG island 18817
Tssr71828 7 30634747 to 30634772 25 - TSS region transcription start site region 71828
Tssr71829 7 30636514 to 30636529 15 - TSS region transcription start site region 71829
4921520E09Rik 7 30636629 to 30638412 1783 unclassified gene RIKEN cDNA 4921520E09 gene
Rbm42 7 30640995 to 30650228 9233 - protein coding gene RNA binding motif protein 42
Gm21982 7 30641001 to 30664937 23936 - unclassified non-coding RNA gene predicted gene 21982
Cpgi18818 7 30649622 to 30650490 868 CpG island CpG island 18818
Tssr71830 7 30649996 to 30650011 15 - TSS region transcription start site region 71830
Tssr71831 7 30650107 to 30650122 15 - TSS region transcription start site region 71831
Tssr71832 7 30650123 to 30650182 59 - TSS region transcription start site region 71832
Gm26610 7 30650385 to 30652711 2326 + lincRNA gene predicted gene, 26610
Tssr65795 7 30650411 to 30650439 28 + TSS region transcription start site region 65795
Haus5 7 30653711 to 30664994 11283 - protein coding gene HAUS augmin-like complex, subunit 5
Tssr71833 7 30660236 to 30660248 12 - TSS region transcription start site region 71833
Tssr71834 7 30660250 to 30660263 13 - TSS region transcription start site region 71834
Cpgi18819 7 30664692 to 30665164 472 CpG island CpG island 18819
Tssr71835 7 30664941 to 30664984 43 - TSS region transcription start site region 71835
Tssr71836 7 30664986 to 30664999 13 - TSS region transcription start site region 71836
Pmis2 7 30670722 to 30671605 883 - protein coding gene Pmis2, sperm specific protein
Tssr71837 7 30671541 to 30671544 3 - TSS region transcription start site region 71837
Tssr71838 7 30671556 to 30671566 10 - TSS region transcription start site region 71838
Tssr71839 7 30671571 to 30671594 23 - TSS region transcription start site region 71839
Tssr71840 7 30671595 to 30671618 23 - TSS region transcription start site region 71840
Tssr71841 7 30671626 to 30671629 3 - TSS region transcription start site region 71841
Tssr2187 7 30671644 to 30671649 5 - TSS region transcription start site region 2187
2200002J24Rik 7 30698926 to 30700536 1610 + protein coding gene RIKEN cDNA 2200002J24 gene
Tssr65796 7 30698934 to 30698947 13 + TSS region transcription start site region 65796
Gm4883 7 30709736 to 30710263 527 + pseudogene predicted gene 4883
Atp4a 7 30712209 to 30725534 13325 + protein coding gene ATPase, H+/K+ exchanging, gastric, alpha polypeptide
Tssr65797 7 30712210 to 30712227 17 + TSS region transcription start site region 65797
Tssr65798 7 30715872 to 30715893 21 + TSS region transcription start site region 65798
Cpgi18820 7 30716914 to 30717904 990 CpG island CpG island 18820
Tssr65799 7 30720281 to 30720290 9 + TSS region transcription start site region 65799
Tssr65800 7 30722486 to 30722505 19 + TSS region transcription start site region 65800
Tssr65801 7 30722604 to 30722612 8 + TSS region transcription start site region 65801
Tmem147 7 30727701 to 30729534 1833 - protein coding gene transmembrane protein 147
Tssr71842 7 30728812 to 30728837 25 - TSS region transcription start site region 71842
Cpgi18821 7 30729086 to 30730012 926 CpG island CpG island 18821
Tssr71843 7 30729435 to 30729453 18 - TSS region transcription start site region 71843
Tssr71844 7 30729468 to 30729501 33 - TSS region transcription start site region 71844
Tssr71845 7 30729505 to 30729556 51 - TSS region transcription start site region 71845
Tssr65802 7 30729563 to 30729643 80 + TSS region transcription start site region 65802
Tmem147os 7 30729579 to 30745929 16350 + antisense lncRNA gene transmembrane protein 147, opposite strand
Tssr65803 7 30729709 to 30729759 50 + TSS region transcription start site region 65803
Gapdhs 7 30729775 to 30743681 13906 - protein coding gene glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
Tssr65804 7 30729795 to 30729806 11 + TSS region transcription start site region 65804
Tssr65805 7 30731174 to 30731177 3 + TSS region transcription start site region 65805
Tssr71846 7 30736959 to 30736963 4 - TSS region transcription start site region 71846
Gm26935 7 30737653 to 30748437 10784 + antisense lncRNA gene predicted gene, 26935
Tssr71847 7 30737843 to 30737867 24 - TSS region transcription start site region 71847
Tssr65806 7 30737886 to 30737913 27 + TSS region transcription start site region 65806
Tssr71848 7 30737932 to 30737939 7 - TSS region transcription start site region 71848
Tssr71849 7 30737948 to 30737974 26 - TSS region transcription start site region 71849
Tssr65807 7 30737959 to 30737988 29 + TSS region transcription start site region 65807
Tssr71850 7 30737982 to 30737991 9 - TSS region transcription start site region 71850
Tssr2188 7 30743704 to 30743731 27 - TSS region transcription start site region 2188
Tssr71851 7 30743765 to 30743776 11 - TSS region transcription start site region 71851
Tssr71852 7 30744127 to 30744140 13 - TSS region transcription start site region 71852
Tssr71853 7 30744169 to 30744199 30 - TSS region transcription start site region 71853
Tssr71854 7 30744201 to 30744214 13 - TSS region transcription start site region 71854
Tssr71855 7 30744217 to 30744230 13 - TSS region transcription start site region 71855
Sbsn 7 30751471 to 30756134 4663 + protein coding gene suprabasin
Tssr65808 7 30751526 to 30751543 17 + TSS region transcription start site region 65808
Tssr71856 7 30752157 to 30752190 33 - TSS region transcription start site region 71856
Tssr65809 7 30763750 to 30763765 15 + TSS region transcription start site region 65809
Dmkn 7 30763756 to 30781063 17307 + protein coding gene dermokine
Tssr65810 7 30764789 to 30764802 13 + TSS region transcription start site region 65810
Cpgi18822 7 30765359 to 30765579 220 CpG island CpG island 18822
Tssr65811 7 30765406 to 30765450 44 + TSS region transcription start site region 65811
Tssr65812 7 30766573 to 30766576 3 + TSS region transcription start site region 65812
Tssr65813 7 30776394 to 30776410 16 + TSS region transcription start site region 65813
Tssr65814 7 30787897 to 30787912 15 + TSS region transcription start site region 65814
Krtdap 7 30787905 to 30791083 3178 + protein coding gene keratinocyte differentiation associated protein
Tssr65815 7 30789704 to 30789708 4 + TSS region transcription start site region 65815
Ffar2 7 30818348 to 30823775 5427 - protein coding gene free fatty acid receptor 2
Cpgi18823 7 30819407 to 30819982 575 CpG island CpG island 18823
Tssr71857 7 30820242 to 30820257 15 - TSS region transcription start site region 71857
Gm32236 7 30820296 to 30828594 8298 + lncRNA gene predicted gene, 32236
Tssr71858 7 30821092 to 30821099 7 - TSS region transcription start site region 71858
Tssr71859 7 30821142 to 30821156 14 - TSS region transcription start site region 71859
Tssr71860 7 30821205 to 30821214 9 - TSS region transcription start site region 71860
Tssr71861 7 30823766 to 30823774 8 - TSS region transcription start site region 71861
Tssr71862 7 30823821 to 30823834 13 - TSS region transcription start site region 71862
Tssr65816 7 30831202 to 30831203 1 + TSS region transcription start site region 65816
Tssr65817 7 30832484 to 30832526 42 + TSS region transcription start site region 65817
Tssr65818 7 30832798 to 30832841 43 + TSS region transcription start site region 65818
Tssr71863 7 30836596 to 30836626 30 - TSS region transcription start site region 71863
Ffar3 7 30854330 to 30856178 1848 - protein coding gene free fatty acid receptor 3
Cpgi18824 7 30855111 to 30855309 198 CpG island CpG island 18824
Tssr71864 7 30856187 to 30856200 13 - TSS region transcription start site region 71864