Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:27163840-27353859

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Egln2 7 27158658 to 27166802 8144 - protein coding gene egl-9 family hypoxia-inducible factor 2
Cpgi18625 7 27164624 to 27164822 198 CpG island CpG island 18625
Cpgi18626 7 27165991 to 27167179 1188 CpG island CpG island 18626
Tssr71351 7 27166382 to 27166393 11 - TSS region transcription start site region 71351
Tssr71352 7 27166427 to 27166467 40 - TSS region transcription start site region 71352
Tssr71353 7 27166470 to 27166522 52 - TSS region transcription start site region 71353
Tssr2152 7 27166540 to 27166551 11 - TSS region transcription start site region 2152
Tssr71354 7 27166712 to 27166724 12 - TSS region transcription start site region 71354
Tssr71355 7 27166732 to 27166765 33 - TSS region transcription start site region 71355
Gm21983 7 27168430 to 27181086 12656 - protein coding gene predicted gene 21983
Rab4b 7 27168433 to 27178883 10450 - protein coding gene RAB4B, member RAS oncogene family
Tssr71356 7 27168685 to 27168720 35 - TSS region transcription start site region 71356
Tssr71357 7 27168728 to 27168746 18 - TSS region transcription start site region 71357
Tssr71358 7 27174552 to 27174576 24 - TSS region transcription start site region 71358
Tssr71359 7 27174581 to 27174603 22 - TSS region transcription start site region 71359
Mir3101 7 27176006 to 27176093 87 - miRNA gene microRNA 3101
Cpgi18627 7 27178552 to 27179269 717 CpG island CpG island 18627
Tssr71360 7 27178814 to 27178829 15 - TSS region transcription start site region 71360
Tssr71361 7 27178835 to 27178888 53 - TSS region transcription start site region 71361
Tssr71362 7 27178912 to 27178923 11 - TSS region transcription start site region 71362
Mia 7 27179741 to 27181149 1408 - protein coding gene melanoma inhibitory activity
Tssr65246 7 27179742 to 27179749 7 + TSS region transcription start site region 65246
Tssr71363 7 27181047 to 27181137 90 - TSS region transcription start site region 71363
Tssr71364 7 27181151 to 27181162 11 - TSS region transcription start site region 71364
Snrpa 7 27187006 to 27196271 9265 - protein coding gene small nuclear ribonucleoprotein polypeptide A
Tssr71365 7 27189469 to 27189489 20 - TSS region transcription start site region 71365
Tssr65247 7 27195121 to 27195123 2 + TSS region transcription start site region 65247
Tssr65248 7 27195138 to 27195143 5 + TSS region transcription start site region 65248
Tssr65249 7 27195148 to 27195159 11 + TSS region transcription start site region 65249
Tssr71366 7 27195646 to 27195674 28 - TSS region transcription start site region 71366
Cpgi18628 7 27195648 to 27196551 903 CpG island CpG island 18628
Tssr71367 7 27195687 to 27195694 7 - TSS region transcription start site region 71367
Tssr71368 7 27195700 to 27195711 11 - TSS region transcription start site region 71368
Tssr71369 7 27195717 to 27195725 8 - TSS region transcription start site region 71369
Tssr71370 7 27195727 to 27195768 41 - TSS region transcription start site region 71370
BC024978 7 27195781 to 27206123 10342 + protein coding gene cDNA sequence BC024978
Tssr65250 7 27195814 to 27195830 16 + TSS region transcription start site region 65250
Tssr65251 7 27195841 to 27195885 44 + TSS region transcription start site region 65251
Tssr65252 7 27195899 to 27195915 16 + TSS region transcription start site region 65252
Tssr71371 7 27196100 to 27196132 32 - TSS region transcription start site region 71371
Tssr71372 7 27196138 to 27196174 36 - TSS region transcription start site region 71372
Tssr65253 7 27196398 to 27196459 61 + TSS region transcription start site region 65253
Tssr65254 7 27196976 to 27196998 22 + TSS region transcription start site region 65254
Mir1191 7 27205536 to 27205655 119 + miRNA gene microRNA 1191
1110035D15Rik 7 27205729 to 27206121 392 unclassified gene RIKEN cDNA 1110035D15 gene
Itpkc 7 27207170 to 27228597 21427 - protein coding gene inositol 1,4,5-trisphosphate 3-kinase C
Cpgi18629 7 27227976 to 27228943 967 CpG island CpG island 18629
Tssr71373 7 27228286 to 27228304 18 - TSS region transcription start site region 71373
Tssr71374 7 27228502 to 27228517 15 - TSS region transcription start site region 71374
Tssr71375 7 27228605 to 27228636 31 - TSS region transcription start site region 71375
Cpgi18630 7 27232819 to 27233282 463 CpG island CpG island 18630
Tssr71376 7 27232872 to 27232888 16 - TSS region transcription start site region 71376
Tssr65255 7 27233003 to 27233064 61 + TSS region transcription start site region 65255
Coq8b 7 27233023 to 27257950 24927 + protein coding gene coenzyme Q8B
Tssr65256 7 27243366 to 27243369 3 + TSS region transcription start site region 65256
Gm15567 7 27249263 to 27257932 8669 - antisense lncRNA gene predicted gene 15567
Tssr65257 7 27252175 to 27252208 33 + TSS region transcription start site region 65257
Gm44641 7 27252176 to 27262252 10076 + unclassified non-coding RNA gene predicted gene 44641
Tssr65258 7 27252256 to 27252266 10 + TSS region transcription start site region 65258
Tssr65259 7 27256479 to 27256504 25 + TSS region transcription start site region 65259
Cpgi18631 7 27257136 to 27257608 472 CpG island CpG island 18631
Cpgi18632 7 27258330 to 27259373 1043 CpG island CpG island 18632
Numbl 7 27258433 to 27282144 23711 + protein coding gene numb-like
Tssr65260 7 27258761 to 27258815 54 + TSS region transcription start site region 65260
Tssr65261 7 27258840 to 27258859 19 + TSS region transcription start site region 65261
Tssr65262 7 27266748 to 27266767 19 + TSS region transcription start site region 65262
Gm15570 7 27271764 to 27272383 619 - pseudogene predicted gene 15570
9530041E20Rik 7 27282183 to 27283130 947 unclassified gene RIKEN cDNA 9530041E20 gene
Cpgi18633 7 27284995 to 27285471 476 CpG island CpG island 18633
Nhdlq6 7 27289442 to 27289559 117 QTL non-HDL QTL 6
D7Mit294 7 27289442 to 27289559 117 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 294
Ltbp4 7 27305136 to 27337692 32556 - protein coding gene latent transforming growth factor beta binding protein 4
Cpgi18634 7 27305403 to 27305569 166 CpG island CpG island 18634
Cpgi18635 7 27308905 to 27309064 159 CpG island CpG island 18635
Tssr65263 7 27308914 to 27308951 37 + TSS region transcription start site region 65263
Tssr65264 7 27309278 to 27309294 16 + TSS region transcription start site region 65264
Tssr71377 7 27310228 to 27310249 21 - TSS region transcription start site region 71377
Tssr71378 7 27310439 to 27310453 14 - TSS region transcription start site region 71378
Cpgi18636 7 27310449 to 27310718 269 CpG island CpG island 18636
Tssr71379 7 27310613 to 27310640 27 - TSS region transcription start site region 71379
Tssr71380 7 27310643 to 27310693 50 - TSS region transcription start site region 71380
Tssr71381 7 27310695 to 27310706 11 - TSS region transcription start site region 71381
Tssr71382 7 27311193 to 27311204 11 - TSS region transcription start site region 71382
Tssr71383 7 27311221 to 27311235 14 - TSS region transcription start site region 71383
Tssr65265 7 27311437 to 27311450 13 + TSS region transcription start site region 65265
Cpgi18637 7 27319408 to 27319727 319 CpG island CpG island 18637
Cpgi18638 7 27322037 to 27322452 415 CpG island CpG island 18638
Cpgi18639 7 27324985 to 27325272 287 CpG island CpG island 18639
Cpgi18640 7 27325502 to 27325989 487 CpG island CpG island 18640
Cpgi18641 7 27326430 to 27326871 441 CpG island CpG island 18641
Tssr71384 7 27327477 to 27327494 17 - TSS region transcription start site region 71384
Tssr71385 7 27328305 to 27328341 36 - TSS region transcription start site region 71385
Cpgi18642 7 27328703 to 27328908 205 CpG island CpG island 18642
Cpgi18643 7 27329291 to 27329959 668 CpG island CpG island 18643
Tssr71386 7 27329473 to 27329489 16 - TSS region transcription start site region 71386
Gm30543 7 27329804 to 27336812 7008 + lncRNA gene predicted gene, 30543
Tssr71387 7 27329881 to 27329885 4 - TSS region transcription start site region 71387
Cpgi18644 7 27330915 to 27331275 360 CpG island CpG island 18644
Cpgi18645 7 27332393 to 27334916 2523 CpG island CpG island 18645
Tssr71388 7 27333602 to 27333640 38 - TSS region transcription start site region 71388
Cpgi18646 7 27335983 to 27336774 791 CpG island CpG island 18646
Cpgi18647 7 27337375 to 27337842 467 CpG island CpG island 18647
Tssr71389 7 27337582 to 27337616 34 - TSS region transcription start site region 71389
Tssr71390 7 27337667 to 27337680 13 - TSS region transcription start site region 71390
Tssr71391 7 27339692 to 27339709 17 - TSS region transcription start site region 71391
Shkbp1 7 27342133 to 27356019 13886 - protein coding gene Sh3kbp1 binding protein 1
Gm20479 7 27352649 to 27357419 4770 - protein coding gene predicted gene 20479