Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:19800428-20130433

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bcl3 7 19808462 to 19822767 14305 - protein coding gene B cell leukemia/lymphoma 3
Cpgi18515 7 19809423 to 19809835 412 CpG island CpG island 18515
Tssr64902 7 19809578 to 19809587 9 + TSS region transcription start site region 64902
Gm16175 7 19809609 to 19811872 2263 + antisense lncRNA gene predicted gene 16175
Cpgi18516 7 19811014 to 19811616 602 CpG island CpG island 18516
Tssr64903 7 19815873 to 19815898 25 + TSS region transcription start site region 64903
Gm16174 7 19816553 to 19818625 2072 + antisense lncRNA gene predicted gene 16174
Tssr64904 7 19816578 to 19816594 16 + TSS region transcription start site region 64904
Tssr64905 7 19816613 to 19816631 18 + TSS region transcription start site region 64905
Cpgi18517 7 19817477 to 19817651 174 CpG island CpG island 18517
Tssr64906 7 19817717 to 19817732 15 + TSS region transcription start site region 64906
Tssr71035 7 19818804 to 19818848 44 - TSS region transcription start site region 71035
Tssr71036 7 19820204 to 19820214 10 - TSS region transcription start site region 71036
Cpgi18518 7 19822168 to 19823004 836 CpG island CpG island 18518
Tssr71037 7 19822698 to 19822776 78 - TSS region transcription start site region 71037
Tssr64907 7 19822897 to 19822916 19 + TSS region transcription start site region 64907
Tssr64908 7 19822928 to 19822943 15 + TSS region transcription start site region 64908
Tssr64909 7 19822958 to 19822967 9 + TSS region transcription start site region 64909
Tssr71038 7 19824248 to 19824259 11 - TSS region transcription start site region 71038
Tssr64910 7 19824480 to 19824498 18 + TSS region transcription start site region 64910
Gm34891 7 19830061 to 19847605 17544 + lncRNA gene predicted gene, 34891
Tssr71039 7 19831871 to 19831900 29 - TSS region transcription start site region 71039
Tssr71040 7 19831940 to 19831958 18 - TSS region transcription start site region 71040
Tssr64911 7 19832056 to 19832108 52 + TSS region transcription start site region 64911
Tssr71041 7 19844548 to 19844552 4 - TSS region transcription start site region 71041
Gm44658 7 19846973 to 19847609 636 + lincRNA gene predicted gene 44658
Tssr64912 7 19851994 to 19852022 28 + TSS region transcription start site region 64912
Gm19345 7 19852003 to 19858350 6347 + protein coding gene predicted gene, 19345
Tssr64913 7 19852024 to 19852045 21 + TSS region transcription start site region 64913
Cpgi18519 7 19852036 to 19852409 373 CpG island CpG island 18519
Tssr64914 7 19852054 to 19852061 7 + TSS region transcription start site region 64914
Ceacam16 7 19852097 to 19861299 9202 - protein coding gene carcinoembryonic antigen-related cell adhesion molecule 16
Cpgi18520 7 19853658 to 19853879 221 CpG island CpG island 18520
Cpgi18521 7 19857705 to 19858176 471 CpG island CpG island 18521
Tssr71042 7 19861222 to 19861225 3 - TSS region transcription start site region 71042
Tssr71043 7 19861228 to 19861242 14 - TSS region transcription start site region 71043
Tssr71044 7 19861295 to 19861299 4 - TSS region transcription start site region 71044
Gm44659 7 19868121 to 19871438 3317 - lincRNA gene predicted gene 44659
Tssr71045 7 19871302 to 19871315 13 - TSS region transcription start site region 71045
Tssr71046 7 19871331 to 19871345 14 - TSS region transcription start site region 71046
Tssr71047 7 19871360 to 19871375 15 - TSS region transcription start site region 71047
Tssr71048 7 19871409 to 19871424 15 - TSS region transcription start site region 71048
Ceacam19 7 19875742 to 19887965 12223 - protein coding gene carcinoembryonic antigen-related cell adhesion molecule 19
Tssr64915 7 19877159 to 19877161 2 + TSS region transcription start site region 64915
Tssr71049 7 19880284 to 19880327 43 - TSS region transcription start site region 71049
Tssr71050 7 19880428 to 19880440 12 - TSS region transcription start site region 71050
Tssr64916 7 19887341 to 19887350 9 + TSS region transcription start site region 64916
Tssr71051 7 19887908 to 19887945 37 - TSS region transcription start site region 71051
Tssr71052 7 19887946 to 19887962 16 - TSS region transcription start site region 71052
Tssr71053 7 19888067 to 19888091 24 - TSS region transcription start site region 71053
Gm44660 7 19897334 to 19899798 2464 + unclassified gene predicted gene 44660
Pvr 7 19903578 to 19921143 17565 - protein coding gene poliovirus receptor
Tssr71054 7 19904705 to 19904716 11 - TSS region transcription start site region 71054
Tssr71055 7 19906542 to 19906545 3 - TSS region transcription start site region 71055
Tssr64917 7 19911802 to 19911805 3 + TSS region transcription start site region 64917
Gm16184 7 19911843 to 19912406 563 + pseudogene predicted gene 16184
Tssr64918 7 19915501 to 19915504 3 + TSS region transcription start site region 64918
Cpgi18522 7 19920155 to 19921287 1132 CpG island CpG island 18522
Gm16251 7 19920729 to 19927607 6878 + antisense lncRNA gene predicted gene 16251
Tssr71056 7 19921104 to 19921121 17 - TSS region transcription start site region 71056
Tssr71057 7 19921126 to 19921136 10 - TSS region transcription start site region 71057
Tssr71058 7 19921139 to 19921146 7 - TSS region transcription start site region 71058
Cpgi18523 7 19935330 to 19935674 344 CpG island CpG island 18523
Tssr71059 7 19935437 to 19935456 19 - TSS region transcription start site region 71059
Tssr71060 7 19935487 to 19935509 22 - TSS region transcription start site region 71060
Igsf23 7 19937305 to 19950756 13451 - protein coding gene immunoglobulin superfamily, member 23
Tssr64919 7 19939872 to 19939877 5 + TSS region transcription start site region 64919
Tssr71061 7 19940353 to 19940388 35 - TSS region transcription start site region 71061
Tssr64920 7 19940451 to 19940465 14 + TSS region transcription start site region 64920
Tssr64921 7 19946123 to 19946140 17 + TSS region transcription start site region 64921
Gm44651 7 19949201 to 19949572 371 - pseudogene predicted gene 44651
Tssr71062 7 19950729 to 19950748 19 - TSS region transcription start site region 71062
Rpl7a-ps8 7 19953783 to 19954583 800 + pseudogene ribosomal protein L7A, pseudogene 8
Tssr64922 7 19965365 to 19965420 55 + TSS region transcription start site region 64922
Ceacam20 7 19965412 to 19991104 25692 + protein coding gene carcinoembryonic antigen-related cell adhesion molecule 20
Tssr64923 7 19965428 to 19965433 5 + TSS region transcription start site region 64923
Tssr64924 7 19965460 to 19965467 7 + TSS region transcription start site region 64924
Tssr64925 7 19965475 to 19965486 11 + TSS region transcription start site region 64925
Tssr64926 7 19965539 to 19965543 4 + TSS region transcription start site region 64926
Tssr2123 7 19989456 to 19989459 3 + TSS region transcription start site region 2123
Nlrp9b 7 19991393 to 20062942 71549 + protein coding gene NLR family, pyrin domain containing 9B
Tssr2124 7 20009640 to 20009649 9 + TSS region transcription start site region 2124
n-R5s152 7 20010084 to 20010202 118 - rRNA gene nuclear encoded rRNA 5S 152
Gm8432 7 20013534 to 20013933 399 - pseudogene predicted gene 8432
Gm18877 7 20072777 to 20073315 538 + pseudogene predicted gene, 18877
Vmn1r91 7 20101158 to 20102081 923 + protein coding gene vomeronasal 1 receptor 91
Gm16442 7 20121656 to 20122579 923 - protein coding gene predicted gene 16442