Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:135944800-136082872

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr53783 5 135957510 to 135957521 11 - TSS region transcription start site region 53783
Tssr53784 5 135957531 to 135957571 40 - TSS region transcription start site region 53784
Tssr53785 5 135957580 to 135957590 10 - TSS region transcription start site region 53785
Cpgi16774 5 135957609 to 135957940 331 CpG island CpG island 16774
Tssr1667 5 135957882 to 135957899 17 + TSS region transcription start site region 1667
Tssr49206 5 135958103 to 135958107 4 + TSS region transcription start site region 49206
Ssc4d 5 135960220 to 135974535 14315 - protein coding gene scavenger receptor cysteine rich family, 4 domains
Tssr53786 5 135962265 to 135962274 9 - TSS region transcription start site region 53786
Tssr53787 5 135962275 to 135962328 53 - TSS region transcription start site region 53787
Cpgi16775 5 135962437 to 135963451 1014 CpG island CpG island 16775
Tssr49207 5 135962919 to 135962932 13 + TSS region transcription start site region 49207
Tssr49208 5 135962939 to 135962960 21 + TSS region transcription start site region 49208
Cpgi16776 5 135965461 to 135965928 467 CpG island CpG island 16776
Cpgi16777 5 135967804 to 135968141 337 CpG island CpG island 16777
Tssr1668 5 135974520 to 135974552 32 - TSS region transcription start site region 1668
Tssr49209 5 135980104 to 135980108 4 + TSS region transcription start site region 49209
Zp3 5 135980105 to 135988624 8519 + protein coding gene zona pellucida glycoprotein 3
Cpgi16778 5 135980313 to 135980644 331 CpG island CpG island 16778
Tssr49210 5 135984158 to 135984161 3 + TSS region transcription start site region 49210
Tssr49211 5 135984205 to 135984216 11 + TSS region transcription start site region 49211
Cpgi16779 5 135994678 to 135995250 572 CpG island CpG island 16779
Tssr49212 5 135994796 to 135994884 88 + TSS region transcription start site region 49212
Dtx2 5 135994800 to 136032872 38072 + protein coding gene deltex 2, E3 ubiquitin ligase
Tssr1669 5 136015186 to 136015203 17 + TSS region transcription start site region 1669
Upk3b 5 136038496 to 136044993 6497 + protein coding gene uroplakin 3B
Tssr49213 5 136038681 to 136038707 26 + TSS region transcription start site region 49213
Tssr49214 5 136038771 to 136038803 32 + TSS region transcription start site region 49214
Tssr1670 5 136039058 to 136039072 14 + TSS region transcription start site region 1670
Tssr49215 5 136039086 to 136039114 28 + TSS region transcription start site region 49215
Tssr49216 5 136054468 to 136054475 7 + TSS region transcription start site region 49216
Upk3bl 5 136054492 to 136064326 9834 + protein coding gene uroplakin 3B-like
Tssr49217 5 136057123 to 136057131 8 + TSS region transcription start site region 49217
Tssr49218 5 136057138 to 136057143 5 + TSS region transcription start site region 49218
Tssr49219 5 136057287 to 136057298 11 + TSS region transcription start site region 49219
Tssr49220 5 136057304 to 136057346 42 + TSS region transcription start site region 49220
Tssr49221 5 136057348 to 136057362 14 + TSS region transcription start site region 49221
Tssr1671 5 136060026 to 136060036 10 + TSS region transcription start site region 1671
Tssr49222 5 136060037 to 136060052 15 + TSS region transcription start site region 49222
Tssr49223 5 136060055 to 136060086 31 + TSS region transcription start site region 49223
Tssr49224 5 136060088 to 136060102 14 + TSS region transcription start site region 49224
Gm40347 5 136072494 to 136074804 2310 - lncRNA gene predicted gene, 40347