Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:115439459-115539599

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Msi1 5 115429599 to 115455698 26099 + protein coding gene musashi RNA-binding protein 1
Tssr48257 5 115443175 to 115443188 13 + TSS region transcription start site region 48257
Tssr48258 5 115448884 to 115448890 6 + TSS region transcription start site region 48258
Tssr48259 5 115450907 to 115450923 16 + TSS region transcription start site region 48259
Tssr48260 5 115453866 to 115453884 18 + TSS region transcription start site region 48260
Tssr48261 5 115453942 to 115453975 33 + TSS region transcription start site region 48261
Tssr48262 5 115454049 to 115454075 26 + TSS region transcription start site region 48262
Tssr48263 5 115454177 to 115454188 11 + TSS region transcription start site region 48263
Tssr48264 5 115454268 to 115454280 12 + TSS region transcription start site region 48264
Tssr48265 5 115454485 to 115454506 21 + TSS region transcription start site region 48265
Tssr48266 5 115454555 to 115454583 28 + TSS region transcription start site region 48266
Tssr48267 5 115455333 to 115455365 32 + TSS region transcription start site region 48267
Tssr52799 5 115464611 to 115464616 5 - TSS region transcription start site region 52799
Tssr48268 5 115465089 to 115465113 24 + TSS region transcription start site region 48268
Tssr48269 5 115466152 to 115466159 7 + TSS region transcription start site region 48269
Tssr48270 5 115466175 to 115466189 14 + TSS region transcription start site region 48270
Tssr48271 5 115466234 to 115466294 60 + TSS region transcription start site region 48271
Pla2g1b 5 115466262 to 115474722 8460 + protein coding gene phospholipase A2, group IB, pancreas
Tssr48272 5 115468445 to 115468458 13 + TSS region transcription start site region 48272
Tssr48273 5 115468476 to 115468489 13 + TSS region transcription start site region 48273
Tssr48274 5 115470781 to 115470793 12 + TSS region transcription start site region 48274
Tssr48275 5 115470811 to 115470828 17 + TSS region transcription start site region 48275
Tssr48276 5 115470836 to 115470841 5 + TSS region transcription start site region 48276
Tssr48277 5 115470853 to 115470865 12 + TSS region transcription start site region 48277
Tssr48278 5 115470870 to 115470880 10 + TSS region transcription start site region 48278
Tssr48279 5 115470888 to 115470917 29 + TSS region transcription start site region 48279
Tssr48280 5 115471691 to 115471693 2 + TSS region transcription start site region 48280
Tssr48281 5 115471981 to 115472003 22 + TSS region transcription start site region 48281
Tssr48282 5 115472008 to 115472015 7 + TSS region transcription start site region 48282
Tssr48283 5 115472022 to 115472080 58 + TSS region transcription start site region 48283
Tssr52800 5 115472055 to 115472117 62 - TSS region transcription start site region 52800
Tssr48284 5 115474504 to 115474515 11 + TSS region transcription start site region 48284
Tssr48285 5 115474518 to 115474575 57 + TSS region transcription start site region 48285
Tssr52801 5 115474548 to 115474568 20 - TSS region transcription start site region 52801
Tssr52802 5 115474573 to 115474578 5 - TSS region transcription start site region 52802
Tssr48286 5 115474578 to 115474581 3 + TSS region transcription start site region 48286
Tssr52803 5 115474590 to 115474600 10 - TSS region transcription start site region 52803
Tssr48287 5 115474612 to 115474638 26 + TSS region transcription start site region 48287
Tssr52804 5 115474641 to 115474670 29 - TSS region transcription start site region 52804
Tssr48288 5 115474648 to 115474662 14 + TSS region transcription start site region 48288
Tssr48289 5 115474673 to 115474682 9 + TSS region transcription start site region 48289
Tssr52805 5 115474710 to 115474717 7 - TSS region transcription start site region 52805
Tssr48290 5 115476867 to 115476871 4 + TSS region transcription start site region 48290
Sirt4 5 115478010 to 115484725 6715 - protein coding gene sirtuin 4
Tssr52806 5 115479644 to 115479651 7 - TSS region transcription start site region 52806
Cpgi16372 5 115480099 to 115480527 428 CpG island CpG island 16372
Cpgi16373 5 115482600 to 115483090 490 CpG island CpG island 16373
Cpgi16374 5 115484222 to 115484561 339 CpG island CpG island 16374
Tssr52807 5 115484351 to 115484387 36 - TSS region transcription start site region 52807
Gm42007 5 115484474 to 115486693 2219 + lncRNA gene predicted gene, 42007
Tssr48291 5 115484483 to 115484520 37 + TSS region transcription start site region 48291
Tssr52808 5 115488922 to 115488932 10 - TSS region transcription start site region 52808
Tssr52809 5 115488944 to 115488949 5 - TSS region transcription start site region 52809
Tssr48292 5 115489310 to 115489322 12 + TSS region transcription start site region 48292
Tssr48293 5 115489456 to 115489458 2 + TSS region transcription start site region 48293
Gm24265 5 115489459 to 115489599 140 + snRNA gene predicted gene, 24265
Tssr48294 5 115489531 to 115489534 3 + TSS region transcription start site region 48294
Tssr52810 5 115489553 to 115489583 30 - TSS region transcription start site region 52810
Cpgi16375 5 115489821 to 115490417 596 CpG island CpG island 16375
Tssr52811 5 115489830 to 115489840 10 - TSS region transcription start site region 52811
Tssr52812 5 115489943 to 115489953 10 - TSS region transcription start site region 52812
Tssr52813 5 115489955 to 115489981 26 - TSS region transcription start site region 52813
Tssr52814 5 115489991 to 115490036 45 - TSS region transcription start site region 52814
Tssr52815 5 115490185 to 115490204 19 - TSS region transcription start site region 52815
Tssr48295 5 115490231 to 115490251 20 + TSS region transcription start site region 48295
Gm24407 5 115490254 to 115490394 140 + snRNA gene predicted gene, 24407
Tssr48296 5 115490326 to 115490329 3 + TSS region transcription start site region 48296
Tssr52816 5 115490344 to 115490378 34 - TSS region transcription start site region 52816
Cpgi16376 5 115491791 to 115492398 607 CpG island CpG island 16376
Tssr52817 5 115491886 to 115491902 16 - TSS region transcription start site region 52817
Gm13836 5 115491955 to 115492455 500 - pseudogene predicted gene 13836
Tssr48297 5 115491970 to 115491988 18 + TSS region transcription start site region 48297
Tssr48298 5 115492365 to 115492381 16 + TSS region transcription start site region 48298
Tssr48299 5 115499748 to 115499751 3 + TSS region transcription start site region 48299
Tssr52818 5 115500462 to 115500495 33 - TSS region transcription start site region 52818
Tssr48300 5 115500642 to 115500649 7 + TSS region transcription start site region 48300
Tssr1611 5 115500667 to 115500676 9 + TSS region transcription start site region 1611
Cpgi16377 5 115506365 to 115507438 1073 CpG island CpG island 16377
Tssr48301 5 115506668 to 115506753 85 + TSS region transcription start site region 48301
Pxn 5 115506676 to 115555987 49311 + protein coding gene paxillin
Gm13840 5 115515263 to 115515947 684 + sense intronic lncRNA gene predicted gene 13840
Cpgi16378 5 115516178 to 115516500 322 CpG island CpG island 16378
Tssr48302 5 115519659 to 115519679 20 + TSS region transcription start site region 48302
Tssr48303 5 115519684 to 115519746 62 + TSS region transcription start site region 48303
Cpgi16379 5 115520351 to 115520578 227 CpG island CpG island 16379
Tssr52819 5 115520641 to 115520646 5 - TSS region transcription start site region 52819
Tssr52820 5 115535773 to 115535794 21 - TSS region transcription start site region 52820