Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:113885950-114125954

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Coro1c 5 113842439 to 113908706 66267 - protein coding gene coronin, actin binding protein 1C
Gm43336 5 113900395 to 113904898 4503 - unclassified gene predicted gene 43336
Tssr48041 5 113907210 to 113907216 6 + TSS region transcription start site region 48041
Cpgi16304 5 113907897 to 113909396 1499 CpG island CpG island 16304
Tssr52675 5 113908665 to 113908674 9 - TSS region transcription start site region 52675
Tssr52676 5 113908685 to 113908720 35 - TSS region transcription start site region 52676
Gm42797 5 113928555 to 113930134 1579 - lincRNA gene predicted gene 42797
Gm22056 5 113928724 to 113928804 80 - snRNA gene predicted gene, 22056
Ssh1 5 113937097 to 113993757 56660 - protein coding gene slingshot protein phosphatase 1
Tssr52677 5 113945262 to 113945277 15 - TSS region transcription start site region 52677
Tssr48042 5 113945450 to 113945466 16 + TSS region transcription start site region 48042
Tssr48043 5 113945518 to 113945533 15 + TSS region transcription start site region 48043
Tssr52678 5 113952053 to 113952069 16 - TSS region transcription start site region 52678
Tssr52679 5 113952350 to 113952392 42 - TSS region transcription start site region 52679
Tssr52680 5 113961812 to 113961818 6 - TSS region transcription start site region 52680
Tssr52681 5 113972961 to 113972976 15 - TSS region transcription start site region 52681
Tssr52682 5 113974766 to 113974780 14 - TSS region transcription start site region 52682
Tssr52683 5 113974830 to 113974850 20 - TSS region transcription start site region 52683
Tssr52684 5 113988743 to 113988748 5 - TSS region transcription start site region 52684
Tssr52685 5 113989739 to 113989744 5 - TSS region transcription start site region 52685
Tssr48044 5 113989884 to 113989909 25 + TSS region transcription start site region 48044
Tssr52686 5 113992406 to 113992412 6 - TSS region transcription start site region 52686
Cpgi16305 5 113993125 to 113994377 1252 CpG island CpG island 16305
Tssr52687 5 113993740 to 113993806 66 - TSS region transcription start site region 52687
Tssr52688 5 113993873 to 113993902 29 - TSS region transcription start site region 52688
Tssr48045 5 114003678 to 114003693 15 + TSS region transcription start site region 48045
Dao 5 114003703 to 114025682 21979 + protein coding gene D-amino acid oxidase
Tssr1599 5 114003711 to 114003721 10 + TSS region transcription start site region 1599
Tssr48046 5 114003725 to 114003737 12 + TSS region transcription start site region 48046
Tssr48047 5 114003813 to 114003831 18 + TSS region transcription start site region 48047
Tssr48048 5 114003833 to 114003886 53 + TSS region transcription start site region 48048
Tssr48049 5 114004781 to 114004809 28 + TSS region transcription start site region 48049
Tssr48050 5 114005950 to 114005954 4 + TSS region transcription start site region 48050
Tssr48051 5 114022283 to 114022292 9 + TSS region transcription start site region 48051
Tssr1600 5 114025024 to 114025063 39 + TSS region transcription start site region 1600
Svop 5 114026913 to 114091423 64510 - protein coding gene SV2 related protein
Cpgi16306 5 114042790 to 114043241 451 CpG island CpG island 16306
Gm16108 5 114065242 to 114089466 24224 + lncRNA gene predicted gene 16108
Tssr48052 5 114065439 to 114065449 10 + TSS region transcription start site region 48052
Tssr48053 5 114065457 to 114065476 19 + TSS region transcription start site region 48053
Cpgi16307 5 114091066 to 114091515 449 CpG island CpG island 16307
Tssr52689 5 114091190 to 114091223 33 - TSS region transcription start site region 52689
Tssr52690 5 114091265 to 114091287 22 - TSS region transcription start site region 52690
Tssr52691 5 114091298 to 114091324 26 - TSS region transcription start site region 52691
Tssr52692 5 114091331 to 114091346 15 - TSS region transcription start site region 52692
Tssr52693 5 114091358 to 114091404 46 - TSS region transcription start site region 52693
Cpgi16308 5 114099834 to 114101221 1387 CpG island CpG island 16308
Tssr48054 5 114100308 to 114100369 61 + TSS region transcription start site region 48054
Usp30 5 114100328 to 114123510 23182 + protein coding gene ubiquitin specific peptidase 30
Tssr48055 5 114103339 to 114103370 31 + TSS region transcription start site region 48055
Gm17833 5 114109007 to 114110000 993 + pseudogene predicted gene, 17833
Gm42913 5 114115829 to 114117681 1852 + unclassified gene predicted gene 42913
Alkbh2 5 114123926 to 114128218 4292 - protein coding gene alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase