Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:66068475-73448481

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lch2 4 45658442 to 67182171 21523729 heritable phenotypic marker low cholesterol 2
Lch 4 45658442 to 67182171 21523729 heritable phenotypic marker low cholesterol
Lhyp 4 60498012 to 66846581 6348569 QTL lung hyperpermeability
Astn2 4 65380803 to 66404531 1023728 - protein coding gene astrotactin 2
Tssr42088 4 66159778 to 66159786 8 - TSS region transcription start site region 42088
Tssr42089 4 66346157 to 66346160 3 - TSS region transcription start site region 42089
Gm11484 4 66353849 to 66354186 337 + pseudogene predicted gene 11484
Cpgi14380 4 66402673 to 66403173 500 CpG island CpG island 14380
Cpgi14381 4 66403426 to 66404994 1568 CpG island CpG island 14381
Tssr42090 4 66404434 to 66404456 22 - TSS region transcription start site region 42090
Tssr42091 4 66404458 to 66404509 51 - TSS region transcription start site region 42091
Tssr42092 4 66404512 to 66404527 15 - TSS region transcription start site region 42092
D4Mcg6 4 66430883 to 66431000 117 DNA segment DNA segment, Chr 4, McGill University 6
D4Mcg27 4 66517187 to 66517326 139 DNA segment DNA segment, Chr 4, McGill University 27
Gm25480 4 66544061 to 66544193 132 + snoRNA gene predicted gene, 25480
D4Mcg24 4 66561307 to 66561419 112 DNA segment DNA segment, Chr 4, McGill University 24
D4Mcg25 4 66652069 to 66652234 165 DNA segment DNA segment, Chr 4, McGill University 25
Gm11220 4 66725070 to 66725544 474 - pseudogene predicted gene 11220
Tssr37604 4 66827545 to 66827617 72 + TSS region transcription start site region 37604
Tlr4 4 66827551 to 66846581 19030 + protein coding gene toll-like receptor 4
Yprl2 4 66827551 to 66846581 19030 QTL Yersinia pestis resistance locus 2
Tssr37605 4 66827637 to 66827644 7 + TSS region transcription start site region 37605
Tssr37606 4 66827678 to 66827697 19 + TSS region transcription start site region 37606
Tssr37607 4 66827699 to 66827723 24 + TSS region transcription start site region 37607
Tssr37608 4 66827735 to 66827766 31 + TSS region transcription start site region 37608
Tssr37609 4 66827772 to 66827793 21 + TSS region transcription start site region 37609
Tssr37610 4 66841062 to 66841071 9 + TSS region transcription start site region 37610
Tssr37611 4 66841757 to 66841775 18 + TSS region transcription start site region 37611
Tssr37612 4 66841834 to 66841853 19 + TSS region transcription start site region 37612
Tssr37613 4 66841858 to 66841870 12 + TSS region transcription start site region 37613
Tssr37614 4 66841892 to 66841909 17 + TSS region transcription start site region 37614
Tssr37615 4 66841952 to 66841965 13 + TSS region transcription start site region 37615
Tssr37616 4 66844479 to 66844488 9 + TSS region transcription start site region 37616
Gm11403 4 67165479 to 67165847 368 + pseudogene predicted gene 11403
Lgth3 4 67182025 to 67182171 146 QTL body length 3
Lprm1 4 67182025 to 67182171 146 QTL lymphoproliferation modifier 1
D4Mit178 4 67182025 to 67182171 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 178
Ccmp4 4 67182025 to 80851736 13669711 QTL cerebellar cAMP 4
D4Mcg5 4 67189074 to 67189241 167 DNA segment DNA segment, Chr 4, McGill University 5
D.seq 4 67221962 to 67222096 134 DNA segment DNA segment, D
E.seq 4 67330078 to 67330321 243 DNA segment DNA segment, E
Hmgb1-rs18 4 67518553 to 67518994 441 - pseudogene high mobility group box 1, related sequence 18
Gm44497 4 67633153 to 67633229 76 + miRNA gene predicted gene, 44497
CA7.3 4 67797435 to 67797636 201 DNA segment DNA segment, CA7.3
Tssr37617 4 67930852 to 67930854 2 + TSS region transcription start site region 37617
Gm11249 4 67930881 to 67931739 858 + pseudogene predicted gene 11249
Gm11751 4 68023031 to 68137113 114082 + lincRNA gene predicted gene 11751
Tssr1201 4 68125040 to 68125051 11 + TSS region transcription start site region 1201
Gm23738 4 68182532 to 68182702 170 + snRNA gene predicted gene, 23738
CA7.11 4 68188935 to 68189109 174 DNA segment DNA segment, CA7.11
Tssr42093 4 68240914 to 68240919 5 - TSS region transcription start site region 42093
Tcp1-ps1 4 68301246 to 68303290 2044 - pseudogene t-complex protein 1, pseudogene 1
Gm12911 4 68312657 to 68321961 9304 - lincRNA gene predicted gene 12911
Tssr37618 4 68587905 to 68587912 7 + TSS region transcription start site region 37618
Brinp1 4 68761514 to 68954397 192883 - protein coding gene bone morphogenic protein/retinoic acid inducible neural specific 1
Tssr42094 4 68762068 to 68762087 19 - TSS region transcription start site region 42094
9330154F10Rik 4 68800551 to 68801629 1078 unclassified gene RIKEN cDNA 9330154F10 gene
D4Mit346 4 68802434 to 68802554 120 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 346
Tssr42095 4 68882671 to 68882677 6 - TSS region transcription start site region 42095
Tssr42096 4 68937714 to 68937715 1 - TSS region transcription start site region 42096
Cpgi14382 4 68953639 to 68954878 1239 CpG island CpG island 14382
Tssr42097 4 68954256 to 68954267 11 - TSS region transcription start site region 42097
Tssr42098 4 68954351 to 68954397 46 - TSS region transcription start site region 42098
Tssr42099 4 68954414 to 68954423 9 - TSS region transcription start site region 42099
Tssr42100 4 68954429 to 68954438 9 - TSS region transcription start site region 42100
Tssr42101 4 68954740 to 68954758 18 - TSS region transcription start site region 42101
Gm42296 4 68957912 to 68959666 1754 + lncRNA gene predicted gene, 42296
Gm24697 4 69110671 to 69110777 106 + snRNA gene predicted gene, 24697
Tssr1202 4 69157226 to 69157230 4 - TSS region transcription start site region 1202
Gm46884 4 69167538 to 69199826 32288 - lncRNA gene predicted gene, 46884
Gm31905 4 69259299 to 69262035 2736 - lncRNA gene predicted gene, 31905
Gm11404 4 69291621 to 69295121 3500 - pseudogene predicted gene 11404
Tssr42102 4 69395443 to 69395489 46 - TSS region transcription start site region 42102
D4Mit324 4 69604504 to 69604585 81 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 324
Tssr37619 4 69691952 to 69691962 10 + TSS region transcription start site region 37619
Gm11221 4 69691978 to 69692574 596 + pseudogene predicted gene 11221
Tssr42103 4 69758447 to 69758454 7 - TSS region transcription start site region 42103
Tssr42104 4 69758475 to 69758481 6 - TSS region transcription start site region 42104
Tssr42105 4 69758503 to 69758524 21 - TSS region transcription start site region 42105
Tssr42106 4 69758528 to 69758549 21 - TSS region transcription start site region 42106
Tssr37620 4 69853929 to 69853941 12 + TSS region transcription start site region 37620
Gm11222 4 69853947 to 69854681 734 + pseudogene predicted gene 11222
Gm11223 4 69925630 to 69926079 449 - pseudogene predicted gene 11223
Tssr37621 4 69925671 to 69925696 25 + TSS region transcription start site region 37621
Tssr1203 4 69925822 to 69925841 19 + TSS region transcription start site region 1203
Tssr42107 4 69925897 to 69925923 26 - TSS region transcription start site region 42107
Tssr42108 4 69926167 to 69926172 5 - TSS region transcription start site region 42108
Gm11224 4 69954169 to 69955276 1107 - pseudogene predicted gene 11224
Gm11225 4 70047157 to 70048202 1045 + pseudogene predicted gene 11225
Cdk5rap2 4 70216855 to 70410435 193580 - protein coding gene CDK5 regulatory subunit associated protein 2
Tssr42109 4 70243662 to 70243691 29 - TSS region transcription start site region 42109
Ywhaq-ps3 4 70248636 to 70249373 737 - pseudogene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 3
Tssr42110 4 70249440 to 70249446 6 - TSS region transcription start site region 42110
Tssr42111 4 70252150 to 70252164 14 - TSS region transcription start site region 42111
Tssr42112 4 70252168 to 70252179 11 - TSS region transcription start site region 42112
Tssr42113 4 70260336 to 70260337 1 - TSS region transcription start site region 42113
Tssr42114 4 70307305 to 70307316 11 - TSS region transcription start site region 42114
Tssr42115 4 70307349 to 70307358 9 - TSS region transcription start site region 42115
Tssr37622 4 70378117 to 70378127 10 + TSS region transcription start site region 37622
Tssr37623 4 70378142 to 70378159 17 + TSS region transcription start site region 37623
Tssr37624 4 70378175 to 70378216 41 + TSS region transcription start site region 37624
Tssr42116 4 70378175 to 70378194 19 - TSS region transcription start site region 42116
Tssr42117 4 70378207 to 70378214 7 - TSS region transcription start site region 42117
Tssr42118 4 70378219 to 70378262 43 - TSS region transcription start site region 42118
Tssr37625 4 70378219 to 70378228 9 + TSS region transcription start site region 37625
Cpgi14383 4 70410010 to 70410720 710 CpG island CpG island 14383
Tssr42119 4 70410305 to 70410323 18 - TSS region transcription start site region 42119
Tssr42120 4 70410334 to 70410360 26 - TSS region transcription start site region 42120
Tssr42121 4 70410422 to 70410463 41 - TSS region transcription start site region 42121
Gm26320 4 70412618 to 70412923 305 - unclassified non-coding RNA gene predicted gene, 26320
Megf9 4 70431927 to 70534928 103001 - protein coding gene multiple EGF-like-domains 9
Tssr42122 4 70433431 to 70433462 31 - TSS region transcription start site region 42122
Cpgi14384 4 70534153 to 70535677 1524 CpG island CpG island 14384
Tssr42123 4 70534870 to 70534885 15 - TSS region transcription start site region 42123
Tssr42124 4 70534904 to 70534987 83 - TSS region transcription start site region 42124
Gm32209 4 70553680 to 70665012 111332 + lncRNA gene predicted gene, 32209
Tssr37626 4 70553692 to 70553734 42 + TSS region transcription start site region 37626
Tssr37627 4 70582416 to 70582423 7 + TSS region transcription start site region 37627
Tssr37628 4 70625173 to 70625202 29 + TSS region transcription start site region 37628
Tssr37629 4 70625207 to 70625220 13 + TSS region transcription start site region 37629
Tssr1204 4 70625224 to 70625229 5 + TSS region transcription start site region 1204
D4Mit132 4 70672553 to 70672675 122 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 132
D4Dcr7 4 70672554 to 70672659 105 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 7
Gm42297 4 70679233 to 70691711 12478 + lncRNA gene predicted gene, 42297
D4Mit83 4 70962376 to 70962548 172 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 83
Gm11227 4 71072673 to 71073143 470 + pseudogene predicted gene 11227
Gm11228 4 71075109 to 71131133 56024 - lincRNA gene predicted gene 11228
Gm18534 4 71094603 to 71095899 1296 - pseudogene predicted gene, 18534
Gm11229 4 71285942 to 71286378 436 + pseudogene predicted gene 11229
Rps18-ps1 4 71370738 to 71371196 458 - pseudogene ribosomal protein S18, pseudogene 1
Gm42298 4 71381969 to 71397235 15266 + lncRNA gene predicted gene, 42298
Hbasrq1a 4 71553352 to 71553352 0 QTL habituation of the acoustic startle response QTL 1a
Hbasrq1 4 71553352 to 71553352 0 QTL habituation of the acoustic startle response QTL 1
Gm11231 4 71678013 to 71679718 1705 + pseudogene predicted gene 11231
Gm11232 4 71755746 to 71757960 2214 - protein coding gene predicted gene 11232
Gm11233 4 71867988 to 71868977 989 + pseudogene predicted gene 11233
Gm11234 4 71980477 to 71999559 19082 + lincRNA gene predicted gene 11234
Tle1 4 72117142 to 72200919 83777 - protein coding gene transducin-like enhancer of split 1
Tssr42125 4 72137116 to 72137129 13 - TSS region transcription start site region 42125
Gm11250 4 72168768 to 72169449 681 + antisense lncRNA gene predicted gene 11250
Tssr42126 4 72169546 to 72169549 3 - TSS region transcription start site region 42126
Tssr42127 4 72169580 to 72169585 5 - TSS region transcription start site region 42127
Tssr42128 4 72193341 to 72193353 12 - TSS region transcription start site region 42128
Tssr42129 4 72198308 to 72198319 11 - TSS region transcription start site region 42129
Cpgi14385 4 72198985 to 72199320 335 CpG island CpG island 14385
Tssr42130 4 72199030 to 72199063 33 - TSS region transcription start site region 42130
Tssr42131 4 72199071 to 72199108 37 - TSS region transcription start site region 42131
Cpgi14386 4 72199638 to 72201789 2151 CpG island CpG island 14386
Tssr42132 4 72200739 to 72200746 7 - TSS region transcription start site region 42132
Tssr42133 4 72200833 to 72200928 95 - TSS region transcription start site region 42133
C630043F03Rik 4 72201244 to 72203930 2686 + lncRNA gene RIKEN cDNA C630043F03 gene
Tssr37630 4 72201258 to 72201365 107 + TSS region transcription start site region 37630
D4Mit85 4 72377575 to 72377715 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 85
D4Mit275 4 72514689 to 72514887 198 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 275
Gm11235 4 72542666 to 72542998 332 + pseudogene predicted gene 11235
D4Mit322 4 72600290 to 72600413 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 322
Aldoart1 4 72850583 to 72852634 2051 - protein coding gene aldolase 1 A, retrogene 1
Tssr42134 4 72852600 to 72852609 9 - TSS region transcription start site region 42134
Tssr42135 4 72852622 to 72852648 26 - TSS region transcription start site region 42135
Gm5287 4 72893781 to 72894378 597 + pseudogene predicted gene 5287
Tssr42136 4 72903712 to 72903716 4 - TSS region transcription start site region 42136
Gm25653 4 72906201 to 72906338 137 - snoRNA gene predicted gene, 25653
Gm11251 4 73029819 to 73036069 6250 + pseudogene predicted gene 11251
Gm25769 4 73114657 to 73114783 126 + snoRNA gene predicted gene, 25769
Gm11487 4 73401032 to 73405072 4040 - protein coding gene predicted gene 11487
Gm11486 4 73415301 to 73418690 3389 - pseudogene predicted gene 11486
Gm11485 4 73422148 to 73423319 1171 - pseudogene predicted gene 11485