Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:53823352-55113592

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr41773 4 53825883 to 53825893 10 - TSS region transcription start site region 41773
Cpgi14306 4 53825944 to 53826484 540 CpG island CpG island 14306
Tssr37307 4 53826014 to 53826107 93 + TSS region transcription start site region 37307
Tmem38b 4 53826045 to 53862019 35974 + protein coding gene transmembrane protein 38B
Tssr37308 4 53826162 to 53826186 24 + TSS region transcription start site region 37308
D4Mit240 4 53828853 to 53828978 125 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 240
Tssr37309 4 53832570 to 53832582 12 + TSS region transcription start site region 37309
Tssr37310 4 53835122 to 53835123 1 + TSS region transcription start site region 37310
Cpgi14307 4 53859998 to 53860159 161 CpG island CpG island 14307
n-R5s185 4 53860652 to 53860770 118 + rRNA gene nuclear encoded rRNA 5S 185
Gm12468 4 53877925 to 53878328 403 + pseudogene predicted gene 12468
Cpgi14308 4 53878656 to 53879062 406 CpG island CpG island 14308
Gm23745 4 53905696 to 53905820 124 + snoRNA gene predicted gene, 23745
Gm33840 4 53948265 to 53951306 3041 - lncRNA gene predicted gene, 33840
D4Mit320 4 53973679 to 53973791 112 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 320
Gm24177 4 54004057 to 54004187 130 + snoRNA gene predicted gene, 24177
Tssr41774 4 54028746 to 54028753 7 - TSS region transcription start site region 41774
Gm33893 4 54029718 to 54070691 40973 + lncRNA gene predicted gene, 33893
Gm12484 4 54151831 to 54163678 11847 - lincRNA gene predicted gene 12484
Gm34008 4 54183218 to 54191833 8615 + lncRNA gene predicted gene, 34008
Tssr41775 4 54190157 to 54190187 30 - TSS region transcription start site region 41775
Gm12469 4 54235670 to 54235876 206 - pseudogene predicted gene 12469
Tssr37311 4 54297857 to 54297881 24 + TSS region transcription start site region 37311
Gm25687 4 54468352 to 54468592 240 + unclassified non-coding RNA gene predicted gene, 25687
Gm34072 4 54550320 to 54551475 1155 - lncRNA gene predicted gene, 34072
Tpt1-ps2 4 54564623 to 54565143 520 + pseudogene tumor protein, translationally-controlled, pseudogene 2
D4Mit274 4 54571525 to 54571620 95 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 274
Gm29067 4 54645811 to 54646280 469 - lincRNA gene predicted gene 29067
Gm12478 4 54646542 to 54689451 42909 + lincRNA gene predicted gene 12478
Gm12480 4 54651903 to 54656077 4174 + lincRNA gene predicted gene 12480
Gm12477 4 54669622 to 54670192 570 - pseudogene predicted gene 12477
Gm24628 4 54710624 to 54710912 288 + unclassified non-coding RNA gene predicted gene, 24628
Cpgi14309 4 54758267 to 54758451 184 CpG island CpG island 14309
Gm34133 4 54851245 to 54893939 42694 - lncRNA gene predicted gene, 34133
Gm12479 4 54853128 to 54854712 1584 + pseudogene predicted gene 12479
Gm8364 4 54944469 to 54945858 1389 unclassified gene predicted gene 8364
Gm46859 4 54944474 to 54947939 3465 - lncRNA gene predicted gene, 46859
Cpgi14310 4 54944819 to 54945688 869 CpG island CpG island 14310
Tssr37312 4 54945014 to 54945035 21 + TSS region transcription start site region 37312
Tssr37313 4 54945038 to 54945082 44 + TSS region transcription start site region 37313
Zfp462 4 54945048 to 55083563 138515 + protein coding gene zinc finger protein 462
Tssr41776 4 54945853 to 54945864 11 - TSS region transcription start site region 41776
Tssr37314 4 54946295 to 54946299 4 + TSS region transcription start site region 37314
Cpgi14311 4 54947182 to 54947550 368 CpG island CpG island 14311
Tssr37315 4 54947223 to 54947234 11 + TSS region transcription start site region 37315
Tssr37316 4 54947515 to 54947543 28 + TSS region transcription start site region 37316
Tssr37317 4 54947605 to 54947650 45 + TSS region transcription start site region 37317
Tssr37318 4 54947841 to 54947855 14 + TSS region transcription start site region 37318
Tssr37319 4 54947998 to 54948054 56 + TSS region transcription start site region 37319
Cpgi14312 4 54948040 to 54948381 341 CpG island CpG island 14312
Cpgi14313 4 54948716 to 54949171 455 CpG island CpG island 14313
Tssr37320 4 55008878 to 55008919 41 + TSS region transcription start site region 37320
Tssr37321 4 55009279 to 55009307 28 + TSS region transcription start site region 37321
9430095M17Rik 4 55020909 to 55021272 363 unclassified gene RIKEN cDNA 9430095M17 gene
Tssr37322 4 55042790 to 55042838 48 + TSS region transcription start site region 37322
Gm10588 4 55043187 to 55044814 1627 unclassified gene predicted gene 10588
Tssr37323 4 55044892 to 55044897 5 + TSS region transcription start site region 37323
Tssr37324 4 55044900 to 55044910 10 + TSS region transcription start site region 37324
Gm42289 4 55060520 to 55069271 8751 - lncRNA gene predicted gene, 42289
Tssr37325 4 55082483 to 55082491 8 + TSS region transcription start site region 37325