Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:49720107-52660463

Filter by:
54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Grin3a 4 49661611 to 49845744 184133 - protein coding gene glutamate receptor ionotropic, NMDA3A
Gm12459 4 49746731 to 49747246 515 - pseudogene predicted gene 12459
Tssr41702 4 49747259 to 49747271 12 - TSS region transcription start site region 41702
Cpgi14293 4 49844295 to 49846056 1761 CpG island CpG island 14293
Tssr41703 4 49844885 to 49844887 2 - TSS region transcription start site region 41703
Tssr41704 4 49845730 to 49845774 44 - TSS region transcription start site region 41704
Tssr41705 4 49845853 to 49845863 10 - TSS region transcription start site region 41705
Gm12458 4 50050909 to 50051403 494 - pseudogene predicted gene 12458
Tssr37267 4 50177582 to 50177587 5 + TSS region transcription start site region 37267
Gm25485 4 50286746 to 50286877 131 + snoRNA gene predicted gene, 25485
Tssr37268 4 50485292 to 50485294 2 + TSS region transcription start site region 37268
Spir2 4 50682795 to 88592400 37909605 QTL Streptococcus pneumoniae infection resistance 2
Gm42288 4 50788227 to 50827001 38774 - lncRNA gene predicted gene, 42288
Tssr37269 4 50789615 to 50789622 7 + TSS region transcription start site region 37269
Gm42287 4 50789624 to 50903726 114102 + lncRNA gene predicted gene, 42287
Tssr41706 4 50827118 to 50827126 8 - TSS region transcription start site region 41706
Gm12460 4 51190107 to 51190463 356 + pseudogene predicted gene 12460
Tssr37270 4 51216648 to 51216683 35 + TSS region transcription start site region 37270
Cylc2 4 51216678 to 51230272 13594 + protein coding gene cylicin, basic protein of sperm head cytoskeleton 2
Tssr37271 4 51229777 to 51229782 5 + TSS region transcription start site region 37271
Amd-ps4 4 51253025 to 51254027 1002 - pseudogene S-adenosylmethionine decarboxylase, pseudogene 4
Gm22563 4 51540747 to 51541015 268 + unclassified non-coding RNA gene predicted gene, 22563
Gm23043 4 51655767 to 51655875 108 + snoRNA gene predicted gene, 23043
Tssr37272 4 51659191 to 51659193 2 + TSS region transcription start site region 37272
Gm24943 4 51799920 to 51800352 432 + ribozyme gene predicted gene, 24943
Gm22042 4 51812483 to 51812647 164 - snRNA gene predicted gene, 22042
Tssr1173 4 51812643 to 51812647 4 - TSS region transcription start site region 1173
Gm46854 4 51876647 to 51877430 783 + lncRNA gene predicted gene, 46854
Gm12461 4 51892893 to 51894131 1238 + pseudogene predicted gene 12461
C630028M04Rik 4 51968094 to 52051110 83016 - lincRNA gene RIKEN cDNA C630028M04 gene
Gm12465 4 52077168 to 52077467 299 - pseudogene predicted gene 12465
D4Mit88 4 52154171 to 52154335 164 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 88
Tssr41707 4 52197211 to 52197217 6 - TSS region transcription start site region 41707
Tssr37273 4 52240860 to 52240872 12 + TSS region transcription start site region 37273
Gm12466 4 52240903 to 52241522 619 + pseudogene predicted gene 12466
Gm12467 4 52241712 to 52242456 744 + pseudogene predicted gene 12467
Gm12475 4 52360826 to 52362211 1385 - pseudogene predicted gene 12475
Smc2os 4 52430284 to 52438964 8680 - antisense lncRNA gene structural maintenance of chromosomes 2, opposite strand
Cpgi14294 4 52438884 to 52439658 774 CpG island CpG island 14294
Tssr37274 4 52439224 to 52439232 8 + TSS region transcription start site region 37274
Tssr37275 4 52439235 to 52439287 52 + TSS region transcription start site region 37275
Smc2 4 52439243 to 52488260 49017 + protein coding gene structural maintenance of chromosomes 2
Tssr37276 4 52440108 to 52440113 5 + TSS region transcription start site region 37276
Tmc4-ps 4 52443915 to 52444172 257 - pseudogene Tmc4 retrotransposed pseudogene
Tssr41708 4 52445415 to 52445440 25 - TSS region transcription start site region 41708
Tssr37277 4 52450856 to 52450866 10 + TSS region transcription start site region 37277
Tssr1174 4 52462964 to 52462977 13 + TSS region transcription start site region 1174
Tssr37278 4 52465928 to 52465941 13 + TSS region transcription start site region 37278
Vma21-ps 4 52496939 to 52497244 305 - pseudogene VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), pseudogene
Tssr37279 4 52596270 to 52596276 6 + TSS region transcription start site region 37279
Toporsl 4 52596274 to 52612424 16150 + protein coding gene topoisomerase I binding, arginine/serine-rich like
Tssr37280 4 52596285 to 52596299 14 + TSS region transcription start site region 37280
Tssr37281 4 52607204 to 52607215 11 + TSS region transcription start site region 37281
Gm33435 4 52615448 to 52617881 2433 - lncRNA gene predicted gene, 33435