Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:49625292-51345294

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm45952 4 49630658 to 49631946 1288 - lncRNA gene predicted gene, 45952
Cpgi14291 4 49631827 to 49632547 720 CpG island CpG island 14291
Tssr41699 4 49631940 to 49631963 23 - TSS region transcription start site region 41699
Tssr37263 4 49631999 to 49632010 11 + TSS region transcription start site region 37263
Rnf20 4 49632006 to 49656887 24881 + protein coding gene ring finger protein 20
Tssr37264 4 49632046 to 49632110 64 + TSS region transcription start site region 37264
Tssr37265 4 49632134 to 49632139 5 + TSS region transcription start site region 37265
Tssr37266 4 49650092 to 49650110 18 + TSS region transcription start site region 37266
Grin3a 4 49661611 to 49845744 184133 - protein coding gene glutamate receptor ionotropic, NMDA3A
Ppp3r2 4 49678747 to 49681983 3236 - protein coding gene protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)
Cpgi14292 4 49681631 to 49682028 397 CpG island CpG island 14292
Tssr41700 4 49681956 to 49682038 82 - TSS region transcription start site region 41700
Gm42286 4 49682004 to 49692792 10788 + lncRNA gene predicted gene, 42286
Tssr41701 4 49682377 to 49682385 8 - TSS region transcription start site region 41701
Gm12459 4 49746731 to 49747246 515 - pseudogene predicted gene 12459
Tssr41702 4 49747259 to 49747271 12 - TSS region transcription start site region 41702
Cpgi14293 4 49844295 to 49846056 1761 CpG island CpG island 14293
Tssr41703 4 49844885 to 49844887 2 - TSS region transcription start site region 41703
Tssr41704 4 49845730 to 49845774 44 - TSS region transcription start site region 41704
Tssr41705 4 49845853 to 49845863 10 - TSS region transcription start site region 41705
Gm12458 4 50050909 to 50051403 494 - pseudogene predicted gene 12458
Tssr37267 4 50177582 to 50177587 5 + TSS region transcription start site region 37267
Gm25485 4 50286746 to 50286877 131 + snoRNA gene predicted gene, 25485
Tssr37268 4 50485292 to 50485294 2 + TSS region transcription start site region 37268
Spir2 4 50682795 to 88592400 37909605 QTL Streptococcus pneumoniae infection resistance 2
Gm42288 4 50788227 to 50827001 38774 - lncRNA gene predicted gene, 42288
Tssr37269 4 50789615 to 50789622 7 + TSS region transcription start site region 37269
Gm42287 4 50789624 to 50903726 114102 + lncRNA gene predicted gene, 42287
Tssr41706 4 50827118 to 50827126 8 - TSS region transcription start site region 41706
Gm12460 4 51190107 to 51190463 356 + pseudogene predicted gene 12460
Tssr37270 4 51216648 to 51216683 35 + TSS region transcription start site region 37270
Cylc2 4 51216678 to 51230272 13594 + protein coding gene cylicin, basic protein of sperm head cytoskeleton 2
Tssr37271 4 51229777 to 51229782 5 + TSS region transcription start site region 37271
Amd-ps4 4 51253025 to 51254027 1002 - pseudogene S-adenosylmethionine decarboxylase, pseudogene 4