Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:47490856-57410866

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683 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
vsd 4 39452126 to 56769494 17317368 heritable phenotypic marker ventricular septal defect
Agnm1 4 46332646 to 55755867 9423221 QTL autoimmune glomerulonephritis in MRL 1
Gm42283 4 47489242 to 47494855 5613 - lncRNA gene predicted gene, 42283
Gm27601 4 47593337 to 47593463 126 + unclassified non-coding RNA gene predicted gene, 27601
Gm42284 4 47595257 to 47606049 10792 - lncRNA gene predicted gene, 42284
Gm32487 4 47603417 to 47608287 4870 + lncRNA gene predicted gene, 32487
Gm27668 4 47603889 to 47604008 119 + unclassified non-coding RNA gene predicted gene, 27668
Gm32544 4 47626015 to 47638877 12862 - lncRNA gene predicted gene, 32544
Gm38343 4 47827224 to 47927365 100141 - unclassified gene predicted gene, 38343
Gm46883 4 47899768 to 47913133 13365 + lncRNA gene predicted gene, 46883
Gm22670 4 47920755 to 47920897 142 + snoRNA gene predicted gene, 22670
Tssr37175 4 47943750 to 47943756 6 + TSS region transcription start site region 37175
Gm46853 4 47946179 to 47951577 5398 - lncRNA gene predicted gene, 46853
Tssr37176 4 47996411 to 47996441 30 + TSS region transcription start site region 37176
Tssr37177 4 47996448 to 47996461 13 + TSS region transcription start site region 37177
Gm12434 4 47996456 to 47998261 1805 + lincRNA gene predicted gene 12434
Tssr37178 4 47996463 to 47996470 7 + TSS region transcription start site region 37178
Tssr41624 4 48034455 to 48034498 43 - TSS region transcription start site region 41624
Tssr41625 4 48039744 to 48039753 9 - TSS region transcription start site region 41625
Tssr41626 4 48039810 to 48039817 7 - TSS region transcription start site region 41626
Tssr37179 4 48039926 to 48039946 20 + TSS region transcription start site region 37179
Tssr41627 4 48042493 to 48042499 6 - TSS region transcription start site region 41627
Tssr41628 4 48042526 to 48042532 6 - TSS region transcription start site region 41628
Cpgi14277 4 48042701 to 48043809 1108 CpG island CpG island 14277
Tssr41629 4 48042853 to 48042871 18 - TSS region transcription start site region 41629
Tssr37180 4 48043001 to 48043023 22 + TSS region transcription start site region 37180
Tssr41630 4 48043189 to 48043240 51 - TSS region transcription start site region 41630
Tssr37181 4 48043515 to 48043541 26 + TSS region transcription start site region 37181
Tssr37182 4 48043545 to 48043572 27 + TSS region transcription start site region 37182
Tssr37183 4 48043640 to 48043652 12 + TSS region transcription start site region 37183
Tssr37184 4 48043658 to 48043677 19 + TSS region transcription start site region 37184
Tssr37185 4 48043840 to 48043849 9 + TSS region transcription start site region 37185
Tssr37186 4 48043855 to 48043864 9 + TSS region transcription start site region 37186
Cpgi14278 4 48044545 to 48046728 2183 CpG island CpG island 14278
Tssr41631 4 48044893 to 48044904 11 - TSS region transcription start site region 41631
Tssr41632 4 48044951 to 48044981 30 - TSS region transcription start site region 41632
Tssr37187 4 48045115 to 48045124 9 + TSS region transcription start site region 37187
Tssr37188 4 48045144 to 48045160 16 + TSS region transcription start site region 37188
Nr4a3 4 48045153 to 48086447 41294 + protein coding gene nuclear receptor subfamily 4, group A, member 3
Tssr37189 4 48045175 to 48045190 15 + TSS region transcription start site region 37189
Tssr37190 4 48045230 to 48045238 8 + TSS region transcription start site region 37190
Tssr37191 4 48045257 to 48045307 50 + TSS region transcription start site region 37191
Tssr37192 4 48045324 to 48045333 9 + TSS region transcription start site region 37192
Tssr37193 4 48045380 to 48045389 9 + TSS region transcription start site region 37193
Tssr37194 4 48045970 to 48045975 5 + TSS region transcription start site region 37194
Tssr41633 4 48046935 to 48046961 26 - TSS region transcription start site region 41633
Tssr41634 4 48047135 to 48047150 15 - TSS region transcription start site region 41634
Tssr37195 4 48047240 to 48047258 18 + TSS region transcription start site region 37195
Tssr37196 4 48047266 to 48047279 13 + TSS region transcription start site region 37196
Cpgi14279 4 48047287 to 48048731 1444 CpG island CpG island 14279
Tssr37197 4 48047302 to 48047310 8 + TSS region transcription start site region 37197
Tssr37198 4 48047324 to 48047327 3 + TSS region transcription start site region 37198
Tssr37199 4 48047339 to 48047377 38 + TSS region transcription start site region 37199
Tssr37200 4 48047384 to 48047389 5 + TSS region transcription start site region 37200
Tssr37201 4 48047738 to 48047753 15 + TSS region transcription start site region 37201
Tssr37202 4 48047864 to 48047888 24 + TSS region transcription start site region 37202
Tssr37203 4 48047901 to 48047916 15 + TSS region transcription start site region 37203
Tssr37204 4 48048067 to 48048089 22 + TSS region transcription start site region 37204
Tssr37205 4 48048112 to 48048119 7 + TSS region transcription start site region 37205
Tssr37206 4 48048275 to 48048283 8 + TSS region transcription start site region 37206
Cpgi14280 4 48048869 to 48049094 225 CpG island CpG island 14280
Tssr37207 4 48049026 to 48049063 37 + TSS region transcription start site region 37207
Tssr41635 4 48049048 to 48049063 15 - TSS region transcription start site region 41635
Tssr37208 4 48049080 to 48049092 12 + TSS region transcription start site region 37208
Tssr41636 4 48049097 to 48049107 10 - TSS region transcription start site region 41636
Tssr37209 4 48049926 to 48049966 40 + TSS region transcription start site region 37209
Tssr37210 4 48050777 to 48050781 4 + TSS region transcription start site region 37210
Tssr37211 4 48051254 to 48051268 14 + TSS region transcription start site region 37211
Tssr37212 4 48051277 to 48051297 20 + TSS region transcription start site region 37212
Tssr37213 4 48051367 to 48051372 5 + TSS region transcription start site region 37213
Tssr37214 4 48051379 to 48051396 17 + TSS region transcription start site region 37214
Tssr37215 4 48051430 to 48051444 14 + TSS region transcription start site region 37215
Cpgi14281 4 48051490 to 48052337 847 CpG island CpG island 14281
Tssr37216 4 48051523 to 48051535 12 + TSS region transcription start site region 37216
Tssr37217 4 48056566 to 48056573 7 + TSS region transcription start site region 37217
Tssr37218 4 48083599 to 48083603 4 + TSS region transcription start site region 37218
Tssr37219 4 48083679 to 48083683 4 + TSS region transcription start site region 37219
Tssr37220 4 48083806 to 48083821 15 + TSS region transcription start site region 37220
Tssr37221 4 48084222 to 48084242 20 + TSS region transcription start site region 37221
Tssr37222 4 48085458 to 48085468 10 + TSS region transcription start site region 37222
Tssr37223 4 48085522 to 48085533 11 + TSS region transcription start site region 37223
Tssr37224 4 48085551 to 48085556 5 + TSS region transcription start site region 37224
Cpgi14282 4 48124725 to 48125419 694 CpG island CpG island 14282
Tssr37225 4 48124903 to 48124938 35 + TSS region transcription start site region 37225
Stx17 4 48124915 to 48186507 61592 + protein coding gene syntaxin 17
Tssr37226 4 48124944 to 48124955 11 + TSS region transcription start site region 37226
Erp44 4 48193323 to 48279558 86235 - protein coding gene endoplasmic reticulum protein 44
Mir1958 4 48213119 to 48213215 96 - miRNA gene microRNA 1958
Cpgi14283 4 48279095 to 48280127 1032 CpG island CpG island 14283
Tssr41637 4 48279502 to 48279515 13 - TSS region transcription start site region 41637
Tssr41638 4 48279544 to 48279613 69 - TSS region transcription start site region 41638
Invs 4 48279760 to 48431954 152194 + protein coding gene inversin
Tssr37227 4 48279794 to 48279852 58 + TSS region transcription start site region 37227
Tssr1170 4 48279857 to 48279881 24 + TSS region transcription start site region 1170
Gm12435 4 48344215 to 48345230 1015 - pseudogene predicted gene 12435
C030004N09Rik 4 48427728 to 48429230 1502 unclassified gene RIKEN cDNA C030004N09 gene
Tex10 4 48430858 to 48473459 42601 - protein coding gene testis expressed gene 10
Tssr41639 4 48435004 to 48435017 13 - TSS region transcription start site region 41639
Tssr41640 4 48435099 to 48435108 9 - TSS region transcription start site region 41640
Tssr41641 4 48442128 to 48442131 3 - TSS region transcription start site region 41641
Tssr41642 4 48468791 to 48468819 28 - TSS region transcription start site region 41642
Cpgi14284 4 48472788 to 48473684 896 CpG island CpG island 14284
Tssr41643 4 48473339 to 48473356 17 - TSS region transcription start site region 41643
Tssr41644 4 48473382 to 48473401 19 - TSS region transcription start site region 41644
Tssr41645 4 48473403 to 48473457 54 - TSS region transcription start site region 41645
Cpgi14285 4 48539838 to 48541148 1310 CpG island CpG island 14285
Tssr37228 4 48539909 to 48539924 15 + TSS region transcription start site region 37228
Msantd3 4 48539935 to 48561919 21984 + protein coding gene Myb/SANT-like DNA-binding domain containing 3
Tssr37229 4 48540067 to 48540086 19 + TSS region transcription start site region 37229
Tssr37230 4 48540118 to 48540138 20 + TSS region transcription start site region 37230
Tssr37231 4 48540152 to 48540167 15 + TSS region transcription start site region 37231
Tssr37232 4 48540347 to 48540368 21 + TSS region transcription start site region 37232
Tssr37233 4 48540381 to 48540411 30 + TSS region transcription start site region 37233
Tssr37234 4 48540419 to 48540502 83 + TSS region transcription start site region 37234
Cpgi14286 4 48584497 to 48586266 1769 CpG island CpG island 14286
Tssr37235 4 48585081 to 48585134 53 + TSS region transcription start site region 37235
Tssr37236 4 48585135 to 48585187 52 + TSS region transcription start site region 37236
Tmeff1 4 48585174 to 48663131 77957 + protein coding gene transmembrane protein with EGF-like and two follistatin-like domains 1
Tssr37237 4 48585198 to 48585215 17 + TSS region transcription start site region 37237
Tssr37238 4 48585227 to 48585245 18 + TSS region transcription start site region 37238
Tssr37239 4 48585248 to 48585268 20 + TSS region transcription start site region 37239
Tssr37240 4 48585276 to 48585328 52 + TSS region transcription start site region 37240
Tssr37241 4 48586991 to 48587000 9 + TSS region transcription start site region 37241
Tssr37242 4 48588646 to 48588650 4 + TSS region transcription start site region 37242
Tssr37243 4 48610441 to 48610448 7 + TSS region transcription start site region 37243
Tssr37244 4 48610488 to 48610507 19 + TSS region transcription start site region 37244
Tssr37245 4 48615530 to 48615535 5 + TSS region transcription start site region 37245
Cpgi14287 4 48617186 to 48617452 266 CpG island CpG island 14287
Tssr37246 4 48618744 to 48618769 25 + TSS region transcription start site region 37246
Tssr37247 4 48618927 to 48618933 6 + TSS region transcription start site region 37247
Tssr37248 4 48636895 to 48636908 13 + TSS region transcription start site region 37248
Tssr37249 4 48662382 to 48662408 26 + TSS region transcription start site region 37249
Tssr37250 4 48663502 to 48663525 23 + TSS region transcription start site region 37250
Cavin4 4 48663514 to 48673492 9978 + protein coding gene caveolae associated 4
Tssr37251 4 48663546 to 48663563 17 + TSS region transcription start site region 37251
Gm12439 4 48675156 to 48675520 364 + pseudogene predicted gene 12439
Gm12438 4 48745515 to 48745850 335 - pseudogene predicted gene 12438
Gm24573 4 48762851 to 48762962 111 - rRNA gene predicted gene, 24573
D4Mit273 4 48782300 to 48782424 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 273
Gm23746 4 48896499 to 48896623 124 + snoRNA gene predicted gene, 23746
Tssr37252 4 48898558 to 48898565 7 + TSS region transcription start site region 37252
Gm12436 4 48898593 to 48963237 64644 + lincRNA gene predicted gene 12436
4933437F24Rik 4 48970694 to 48972164 1470 unclassified gene RIKEN cDNA 4933437F24 gene
Gm12442 4 48972978 to 48973315 337 + pseudogene predicted gene 12442
Cpgi14288 4 49058784 to 49060202 1418 CpG island CpG island 14288
Tssr37253 4 49059231 to 49059247 16 + TSS region transcription start site region 37253
Tssr37254 4 49059256 to 49059330 74 + TSS region transcription start site region 37254
Tssr37255 4 49059335 to 49059347 12 + TSS region transcription start site region 37255
Tssr37256 4 49059439 to 49059465 26 + TSS region transcription start site region 37256
Plppr1 4 49059462 to 49340261 280799 + protein coding gene phospholipid phosphatase related 1
Tssr37257 4 49059466 to 49059550 84 + TSS region transcription start site region 37257
Gm32657 4 49227442 to 49244719 17277 - lncRNA gene predicted gene, 32657
Gm22685 4 49289298 to 49289403 105 + snRNA gene predicted gene, 22685
D4Mit112 4 49304001 to 49304124 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 112
Gm12453 4 49342248 to 49342578 330 + pseudogene predicted gene 12453
Rbpj-ps1 4 49350522 to 49351527 1005 + pseudogene recombination signal binding protein for immunoglobulin kappa J region, pseudogene 1
Acnat2 4 49379840 to 49408151 28311 - protein coding gene acyl-coenzyme A amino acid N-acyltransferase 2
Tssr41646 4 49383689 to 49383716 27 - TSS region transcription start site region 41646
Tssr41647 4 49383783 to 49383793 10 - TSS region transcription start site region 41647
Gm12451 4 49396112 to 49407732 11620 + pseudogene predicted gene 12451
Tssr41648 4 49408042 to 49408045 3 - TSS region transcription start site region 41648
Gm12452 4 49412307 to 49412637 330 + pseudogene predicted gene 12452
Rbpj-ps2 4 49430226 to 49444084 13858 + pseudogene recombination signal binding protein for immunoglobulin kappa J region, pseudogene 2
Tssr41649 4 49446293 to 49446312 19 - TSS region transcription start site region 41649
Acnat1 4 49447105 to 49473912 26807 - protein coding gene acyl-coenzyme A amino acid N-acyltransferase 1
Tssr41650 4 49447172 to 49447176 4 - TSS region transcription start site region 41650
Tssr41651 4 49451234 to 49451274 40 - TSS region transcription start site region 41651
Tssr41652 4 49473870 to 49473887 17 - TSS region transcription start site region 41652
Tssr41653 4 49473905 to 49473918 13 - TSS region transcription start site region 41653
Gm26424 4 49474307 to 49474410 103 + snRNA gene predicted gene, 26424
Gm33009 4 49474707 to 49487266 12559 + lncRNA gene predicted gene, 33009
9030417H13Rik 4 49478385 to 49481035 2650 unclassified gene RIKEN cDNA 9030417H13 gene
Tssr41654 4 49481034 to 49481044 10 - TSS region transcription start site region 41654
Tssr41655 4 49481098 to 49481108 10 - TSS region transcription start site region 41655
Tssr41656 4 49481117 to 49481128 11 - TSS region transcription start site region 41656
Tssr41657 4 49481168 to 49481182 14 - TSS region transcription start site region 41657
Tssr41658 4 49481197 to 49481208 11 - TSS region transcription start site region 41658
Tssr41659 4 49481273 to 49481309 36 - TSS region transcription start site region 41659
Gm32894 4 49488479 to 49504473 15994 + lncRNA gene predicted gene, 32894
Baat 4 49489422 to 49506557 17135 - protein coding gene bile acid-Coenzyme A: amino acid N-acyltransferase
Tssr41660 4 49506490 to 49506513 23 - TSS region transcription start site region 41660
Tssr41661 4 49506528 to 49506533 5 - TSS region transcription start site region 41661
Tssr41662 4 49506538 to 49506563 25 - TSS region transcription start site region 41662
Mrpl50 4 49512597 to 49521083 8486 - protein coding gene mitochondrial ribosomal protein L50
Cpgi14289 4 49520651 to 49521678 1027 CpG island CpG island 14289
Tssr41663 4 49521036 to 49521089 53 - TSS region transcription start site region 41663
Zfp189 4 49521176 to 49531517 10341 + protein coding gene zinc finger protein 189
Tssr37258 4 49521214 to 49521296 82 + TSS region transcription start site region 37258
1110065F06Rik 4 49532183 to 49533792 1609 unclassified gene RIKEN cDNA 1110065F06 gene
Aldob 4 49535995 to 49549546 13551 - protein coding gene aldolase B, fructose-bisphosphate
Tssr37259 4 49536505 to 49536557 52 + TSS region transcription start site region 37259
Tssr41664 4 49536607 to 49536621 14 - TSS region transcription start site region 41664
Tssr41665 4 49536632 to 49536643 11 - TSS region transcription start site region 41665
Tssr41666 4 49536645 to 49536656 11 - TSS region transcription start site region 41666
Tssr37260 4 49536645 to 49536665 20 + TSS region transcription start site region 37260
Tssr41667 4 49536682 to 49536694 12 - TSS region transcription start site region 41667
Tssr41668 4 49536735 to 49536753 18 - TSS region transcription start site region 41668
Tssr41669 4 49536789 to 49536800 11 - TSS region transcription start site region 41669
Tssr1171 4 49536802 to 49536806 4 - TSS region transcription start site region 1171
Tssr1172 4 49536812 to 49536815 3 - TSS region transcription start site region 1172