Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:43562686-43822817

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi14195 4 43561774 to 43563094 1320 CpG island CpG island 14195
Creb3 4 43562634 to 43567060 4426 + protein coding gene cAMP responsive element binding protein 3
Tssr36983 4 43562672 to 43562693 21 + TSS region transcription start site region 36983
Tssr36984 4 43562706 to 43562715 9 + TSS region transcription start site region 36984
Gba2 4 43566928 to 43578864 11936 - protein coding gene glucosidase beta 2
Gm42278 4 43568928 to 43577648 8720 + lncRNA gene predicted gene, 42278
Cpgi14196 4 43578090 to 43579287 1197 CpG island CpG island 14196
Tssr41464 4 43578531 to 43578561 30 - TSS region transcription start site region 41464
Tssr41465 4 43578569 to 43578587 18 - TSS region transcription start site region 41465
Tssr41466 4 43578651 to 43578667 16 - TSS region transcription start site region 41466
Tssr36985 4 43578709 to 43578772 63 + TSS region transcription start site region 36985
Rgp1 4 43578735 to 43587487 8752 + protein coding gene RAB6A GEF compex partner 1
Tssr41467 4 43578824 to 43578909 85 - TSS region transcription start site region 41467
Tssr36986 4 43578921 to 43578974 53 + TSS region transcription start site region 36986
Msmp 4 43583216 to 43584494 1278 - protein coding gene microseminoprotein, prostate associated
Tssr41468 4 43584386 to 43584393 7 - TSS region transcription start site region 41468
Gm12472 4 43588072 to 43608755 20683 + antisense lncRNA gene predicted gene 12472
Gm42279 4 43603210 to 43622371 19161 - lncRNA gene predicted gene, 42279
Cpgi14197 4 43630938 to 43632622 1684 CpG island CpG island 14197
Tssr36987 4 43631355 to 43631414 59 + TSS region transcription start site region 36987
Tssr36988 4 43631417 to 43631437 20 + TSS region transcription start site region 36988
Gm25262 4 43631425 to 43631557 132 + miRNA gene predicted gene, 25262
Gm12473 4 43631539 to 43641533 9994 - antisense lncRNA gene predicted gene 12473
Tssr36989 4 43631587 to 43631598 11 + TSS region transcription start site region 36989
Npr2 4 43631935 to 43651244 19309 + protein coding gene natriuretic peptide receptor 2
Ps 4 43631935 to 80851736 37219801 heritable phenotypic marker polysyndactyly
Spag8 4 43651335 to 43653594 2259 - protein coding gene sperm associated antigen 8
Tssr41469 4 43653542 to 43653557 15 - TSS region transcription start site region 41469
Tssr41470 4 43653560 to 43653583 23 - TSS region transcription start site region 41470
Hint2 4 43654227 to 43656466 2239 - protein coding gene histidine triad nucleotide binding protein 2
Tssr1156 4 43655537 to 43655540 3 + TSS region transcription start site region 1156
Cpgi14198 4 43655681 to 43656800 1119 CpG island CpG island 14198
Tssr41471 4 43656437 to 43656471 34 - TSS region transcription start site region 41471
Gm4748 4 43656895 to 43663943 7048 - pseudogene predicted gene 4748
Fam221b 4 43659622 to 43668859 9237 - protein coding gene family with sequence similarity 221, member B
Tssr41472 4 43661963 to 43662005 42 - TSS region transcription start site region 41472
Tssr41473 4 43662010 to 43662021 11 - TSS region transcription start site region 41473
Tssr36990 4 43663931 to 43663947 16 + TSS region transcription start site region 36990
Gm12481 4 43664043 to 43664339 296 + pseudogene predicted gene 12481
Tssr36991 4 43664049 to 43664058 9 + TSS region transcription start site region 36991
Tssr41474 4 43668800 to 43668831 31 - TSS region transcription start site region 41474
Tssr41475 4 43668833 to 43668863 30 - TSS region transcription start site region 41475
Cpgi14199 4 43668864 to 43669891 1027 CpG island CpG island 14199
Tmem8b 4 43668971 to 43692668 23697 + protein coding gene transmembrane protein 8B
Tssr41476 4 43669146 to 43669200 54 - TSS region transcription start site region 41476
Tssr41477 4 43669204 to 43669215 11 - TSS region transcription start site region 41477
Tssr36992 4 43669266 to 43669287 21 + TSS region transcription start site region 36992
Tssr36993 4 43669288 to 43669329 41 + TSS region transcription start site region 36993
Tssr36994 4 43669666 to 43669678 12 + TSS region transcription start site region 36994
Gm23257 4 43692686 to 43692817 131 + rRNA gene predicted gene, 23257
Olfr70 4 43695000 to 43700807 5807 - protein coding gene olfactory receptor 70
Olfr71 4 43705628 to 43706566 938 - protein coding gene olfactory receptor 71
Tssr36995 4 43727181 to 43727205 24 + TSS region transcription start site region 36995
Hrct1 4 43727198 to 43728110 912 + protein coding gene histidine rich carboxyl terminus 1
Tssr36996 4 43727206 to 43727243 37 + TSS region transcription start site region 36996
Tssr36997 4 43727245 to 43727262 17 + TSS region transcription start site region 36997
Tssr36998 4 43727276 to 43727313 37 + TSS region transcription start site region 36998
Spaar 4 43730034 to 43734534 4500 + lincRNA gene small regulatory polypeptide of amino acid response
Tssr36999 4 43730426 to 43730451 25 + TSS region transcription start site region 36999
Cpgi14200 4 43731032 to 43731219 187 CpG island CpG island 14200
2900073C16Rik 4 43748025 to 43748642 617 unclassified gene RIKEN cDNA 2900073C16 gene
A630077J23Rik 4 43751859 to 43759464 7605 + lncRNA gene RIKEN cDNA A630077J23 gene
D4Mit91 4 43760628 to 43760862 234 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 91
Sicd3 4 43760862 to 9395525 -34365337 QTL seizure-induced cell death 3
Olfr269-ps1 4 43767476 to 43767777 301 - pseudogene olfactory receptor 269, pseudogene 1
Olfr159 4 43770050 to 43771009 959 - protein coding gene olfactory receptor 159
Olfr29-ps1 4 43781365 to 43782327 962 - polymorphic pseudogene olfactory receptor 29, pseudogene 1
Tssr1157 4 43791624 to 43791635 11 + TSS region transcription start site region 1157
Gm12492 4 43798899 to 43800255 1356 - pseudogene predicted gene 12492
Olfr156 4 43820335 to 43821433 1098 - protein coding gene olfactory receptor 156